Pushing Back Against Deficit Narratives: Mentoring as Scholars of Color

In this article we share our lived experiences with mentoring. As tenured women professors of color, we push back against the assumption that institutions of higher education are neutral sites, that we have to change to belong, and that we do not belong. Each of us underscores the importance and value of our realities and the knowledge we generate to address inequality and to counteract negative stereotyping. We argue that rejecting deficit narratives and privileging the narratives of those we mentor and of those who have mentored us is vital to increasing faculty of color diversity, inclusion and belonging in higher education.Educatio

An ellipsometric study of protein adsorption at the saliva-air interface

At the liquid-air interface of human saliva a protein layer is adsorbed. From ellipsometric measurements it was found that the thickness of the surface layer ranged from 400 to 3600 Å and the amount of protein material adsorbed was 9–340 mg/m2. Based on the concentration of protein in the layer the samples could be classified into two groups: a low concentration (ca. 0.15 g/ml) and a high concentration (0.7–1.1 g/ml). In the low concentration group the surface layers appeared to be thin (500–600 Å) while those in the high concentration group appeared to be much thicker (1000–3500 Å). A correlation between the bulk pH and the thickness of the surface layer could be established

Rheological properties of saliva substitutes containing mucin, carboxymethylcellulose or polyethylenoxide

Apparent viscosities at different shear rates were measured for 3 types of saliva substitutes: (a) mucin-containing saliva; (b) substitutes based upon carboxymethylcellulose (CMC), and (c) solution of polyethylenoxide (PEO). The apparent viscosities were compared with those of human whole saliva. Human whole saliva and mucin-containing saliva substitutes appeared to be similar in their rheological properties. Both types of solution are viscoelastic solutions and adjust their apparent viscosities to their biological functions. Preparations containing CMC or PEO are non-Newtonian liquids. From this study it is concluded that mucin-containing saliva substitutes appear to be the best substitutes for natural saliva, as far as rheological properties are concerned

Rheological properties of human saliva

From measurements with a Couette-type viscometer provided with a guard ring it was shown that at the saliva-air interface a protein layer is adsorbed. Measurements of the surface shear modulus of this layer on saliva of 7 healthy subjects were performed at a frequency of about 70 Hz and a temperature of 25 °C. For a surface age of about 1.5 h the surface shear modulus and the surface viscosity were in the order of 1 Nm−1 and 10−3 Nm−1 s, respectively. From ellipsometric measurements it was found that the thickness of the protein layer was approx. 100nm and, using this value, it could be concluded that the shear modulus and the dynamic viscosity were in the order of 107 Pa and 104 Pa s, respectively. The layer appeared to be fragile. Even shear deformation amplitudes of 4 × 10−5 are too high to assure linearity. The complex viscosity (η = η′ − iη′′) of the bulk liquid of human submandibular saliva below the absorbed layer was measured in the frequency range 70 Hz–200 kHz with 3 torsional resonators, each for a different frequency, and a Ni-tube resonator. It was concluded, that the real part of the complex viscosity (η′) decreases from 1.1 mPa s at 70 Hz to a value of 0.95 mPa s at high frequencies. Except at the lowest frequency (70 Hz), the value of η′′ was too small to be detected

Model for Folding and Aggregation in RNA Secondary Structures

We study the statistical mechanics of RNA secondary structures designed to have an attraction between two different types of structures as a model system for heteropolymer aggregation. The competition between the branching entropy of the secondary structure and the energy gained by pairing drives the RNA to undergo a `temperature independent' second order phase transition from a molten to an aggregated phase'. The aggregated phase thus obtained has a macroscopically large number of contacts between different RNAs. The partition function scaling exponent for this phase is \theta ~ 1/2 and the crossover exponent of the phase transition is \nu ~ 5/3. The relevance of these calculations to the aggregation of biological molecules is discussed.Comment: Revtex, 4 pages; 3 Figures; Final published versio

Enumeration of RNA structures by Matrix Models

We enumerate the number of RNA contact structures according to their genus, i.e. the topological character of their pseudoknots. By using a recently proposed matrix model formulation for the RNA folding problem, we obtain exact results for the simple case of an RNA molecule with an infinitely flexible backbone, in which any arbitrary pair of bases is allowed. We analyze the distribution of the genus of pseudoknots as a function of the total number of nucleotides along the phosphate-sugar backbone.Comment: RevTeX, 4 pages, 2 figure

Similarity-Detection and Localization

The detection of similarities between long DNA and protein sequences is studied using concepts of statistical physics. It is shown that mutual similarities can be detected by sequence alignment methods only if their amount exceeds a threshold value. The onset of detection is a continuous phase transition which can be viewed as a localization-delocalization transition. The ``fidelity'' of the alignment is the order parameter of that transition; it leads to criteria for the selection of optimal alignment parameters.Comment: 4 pages including 4 figures (308kb post-script file