The Discovery of XY Sex Chromosomes in a \u3cem\u3eBoa\u3c/em\u3e and \u3cem\u3ePython\u3c/em\u3e

For over 50 years, biologists have accepted that all extant snakes share the same ZW sex chromosomes derived from a common ancestor [1, 2, 3], with different species exhibiting sex chromosomes at varying stages of differentiation. Accordingly, snakes have been a well-studied model for sex chromosome evolution in animals [1, 4]. A review of the literature, however, reveals no compelling support that boas and pythons possess ZW sex chromosomes [2, 5]. Furthermore, phylogenetic patterns of facultative parthenogenesis in snakes and a sex-linked color mutation in the ball python (Python regius) are best explained by boas and pythons possessing an XY sex chromosome system [6, 7]. Here we demonstrate that a boa (Boa imperator) and python (Python bivittatus) indeed possess XY sex chromosomes, based on the discovery of male-specific genetic markers in both species. We use these markers, along with transcriptomic and genomic data, to identify distinct sex chromosomes in boas and pythons, demonstrating that XY systems evolved independently in each lineage. This discovery highlights the dynamic evolution of vertebrate sex chromosomes and further enhances the value of snakes as a model for studying sex chromosome evolution

Is It Easy to Be Urban? Convergent Success in Urban Habitats among Lineages of a Widespread Native Ant

The most rapidly expanding habitat globally is the urban habitat, yet the origin and life histories of the populations of native species that inhabit this habitat remain poorly understood. We use DNA barcoding of the COI gene in the widespread native pest ant Tapinoma sessile to test two hypotheses regarding the origin of urban populations and traits associated with their success. First, we determine if urban samples of T. sessile have a single origin from natural populations by looking at patterns of haplotype clustering fromacross their range. Second, we examine whether polygynous colony structure - a trait associated with invasion success - is correlated with urban environments, by studying the lineage dependence of colony structure. Our phylogenetic analysis of 49 samples identified four well supported geographic clades. Within clades, Kimura-2 parameter pairwise genetic distances revealed \u3c2.3% variation; however, between clade genetic distances were 7.5-10.0%, suggesting the possibility of the presence of cryptic species. Our results indicate that T. sessile has successfully colonized urban environments multiple times. Additionally, polygynous colony structure is a highly plastic trait across habitat, clade, and haplotype. In short, T. sessile has colonized urban habitats repeatedly and appears to do so using life history strategies already present in more natural populations. Whether similar results hold for other species found in urban habitats has scarcely begun to be considered

Reproductive Compatibility among Populations and Host‐Associated Lineages of the Common Bed Bug (\u3cem\u3eCimex lectularius\u3c/em\u3e L.)

As populations differentiate across geographic or host‐association barriers, interpopulation fertility is often a measure of the extent of incipient speciation. The bed bug, Cimex lectularius L., was recently found to form two host‐associated lineages within Europe: one found with humans (human‐associated, HA) and the other found with bats (bat‐associated, BA). No unequivocal evidence of contemporary gene flow between these lineages has been found; however, it is unclear whether this is due to an inability to produce viable “hybrid” offspring. To address this question and determine the extent of compatibility between host‐associated lineages, we set up mating crosses among populations of bed bugs based on both their host association (human—HA vs. bat—BA) and geographic origin (North America vs. Europe). Within‐population fecundity was significantly higher for all HA populations (\u3e 1.7 eggs/day) than for BA populations (\u3c 1 egg/day). However, all within‐population crosses, regardless of host association, had \u3e 92% egg hatch rates. Contrary to previous reports, in all interlineage crosses, successful matings occurred, fertile eggs were oviposited, and the F1 “hybrid” generation was found to be reproductively viable. In addition, we evaluated interpopulation genetic variation in Wolbachia among host‐associated lineages. We did not find any clear patterns related to host association, nor did we observe a homogenization of Wolbachia lineages across populations that might explain a breakdown of reproductive incompatibility. These results indicate that while the HA and BA populations of C. lectularius represent genetically differentiated host‐associated lineages, possibly undergoing sympatric speciation, this is in its incipient stage as they remain reproductively compatible. Other behavioral, physiological, and/or ecological factors likely maintain host‐associated differentiation

Is It Easy to Be Urban? Convergent Success in Urban Habitats among Lineages of a Widespread Native Ant

The most rapidly expanding habitat globally is the urban habitat, yet the origin and life histories of the populations of native species that inhabit this habitat remain poorly understood. We use DNA barcoding of the COI gene in the widespread native pest ant Tapinoma sessile to test two hypotheses regarding the origin of urban populations and traits associated with their success. First, we determine if urban samples of T. sessile have a single origin from natural populations by looking at patterns of haplotype clustering from across their range. Second, we examine whether polygynous colony structure – a trait associated with invasion success – is correlated with urban environments, by studying the lineage dependence of colony structure. Our phylogenetic analysis of 49 samples identified four well supported geographic clades. Within clades, Kimura-2 parameter pairwise genetic distances revealed <2.3% variation; however, between clade genetic distances were 7.5–10.0%, suggesting the possibility of the presence of cryptic species. Our results indicate that T. sessile has successfully colonized urban environments multiple times. Additionally, polygynous colony structure is a highly plastic trait across habitat, clade, and haplotype. In short, T. sessile has colonized urban habitats repeatedly and appears to do so using life history strategies already present in more natural populations. Whether similar results hold for other species found in urban habitats has scarcely begun to be considered

Consecutive Virgin Births in the New World Boid Snake, the Colombian Rainbow Boa, Epicrates maurus

Until recently, facultative automictic parthenogenesis within the squamate reptiles exhibiting ZZ:ZW genetic sex determination has resulted in single reproductive events producing male (ZZ) or female (ZW) offspring. With the recent discovery of viable parthenogenetically produced female (WW) Boa constrictors, the existence of further parthenogenetic events resulting in WW females was questioned. Here, we provide genetic evidence for consecutive virgin births by a female Colombian rainbow boa (Epicrates maurus), resulting in the production of WW females likely through terminal fusion automixis. Samples were screened at 22 microsatellite loci with 12 amplifying unambiguous products. Of these, maternal heterozygosity was observed in 4, with the offspring differentially homozygous at each locus. This study documents the first record of parthenogenesis within the genus Epicrates, a second within the serpent lineage Boidae, and the third genetically confirmed case of consecutive virgin births of viable offspring within any vertebrate lineage. Unlike the recent record in Boa constrictors, the female described here was isolated from conspecifics from birth, demonstrating that males are not required to stimulate parthenogenetic reproduction in this species and possibly other Boa

Ocean warming affects the distribution and abundance of resident fishes by changing their reproductive scope

With ocean warming predicted globally, one of the mechanisms driving distributional shifts and changes in the abundance of resident fishes is reproductive output. The relationship between sea surface temperature and the reproductive activity of a eurythermic, resident coastal species, blacktail seabream Diplodus sargus capensis, was examined in the ‘‘ocean warming’’ hotspot of the northern Benguela. Reproductive activity was found to be restricted to periods when the water temperature dropped below 20 _C. A metadata analysis conducted on the D. sargus sub-species complex similarly showed that reproductive activity was restricted to temperatures between 15 and 20 _C, regardless of the range in ambient water temperature. Based on these findings and using satellite derived SST information, we examined D. s. capensis’s total and seasonal ‘‘reproductive scope’’ that is defined as either the area suitable for spawning each year or the duration of its potential spawning season at a fixed geographical locality, respectively. Trends were examined over the last three decades. Reproductive scope by area was found to be shrinking at a rate of 7 % per decade in southern Angola and expanding at a rate of 6 % per decade in northern Namibia. Reproductive scope by season decreased by 1.05 months per decade in Namibe, southern Angola and increased by 0.76 months per decade in Hentiesbaai, northern Namibia. Changes in reproductive scope may be a driving mechanism of distributional shifts in resident fishes, although the rate of the shifts is likely to be slow. More importantly, changes in reproductive scope will not be uniform throughout fish distributions and will most likely result in heterogeneous variations in fish abundance

Processing information during regressions:An application of the reverse boundary-change paradigm

Although 10–15% of eye-movements during reading are regressions, we still know little about the information that is processed during regressive episodes. Here, we report an eye-movement study that uses what we call the reverse boundary change technique to examine the processing of lexical-semantic information during regressions, and to establish the role of this information during recovery from processing difficulty. In the critical condition of the experiment, an initially implausible sentence (e.g., There was an old house that John had ridden when he was a boy) was rendered plausible by changing a context word (house) to a lexical neighbor (horse) using a gaze-contingent display change, at the point where the reader's gaze crossed an invisible boundary further on in the sentence. Due to the initial implausibility of the sentence, readers often launched regressions from the later part of the sentence. However, despite this initial processing difficulty, reading was facilitated, relative to a condition where the display change did not occur (i.e., the word house remained on screen throughout the trial). This result implies that the relevant lexical semantic information was processed during the regression, and was used to aid recovery from the initial processing difficulty

Predictor variables for moggel (Labeo umbratus) biomass and production in small South African reservoirs

South Africa has approximately 3 100 registered reservoirs, ranging in size from 1–1 000 hectares, with a surface area totalling 84 439 hectares (SADC Surface Water Body Database, unpublished data). Within southern and eastern Africa, Lindqvist (1994) estimated the number of small reservoirs to be between 50 000 and 100 000. Given Bernacsek’s (1986) estimate of the total fishery potential of small reservoirs in Africa at between 1 and 2.3 million tons, this number of reservoirs clearly could provide fishery opportunities for rural communities

Reproductive biology of a riverine cyprinid, Labeo umbratus (Teleostei: Cyprinidae), in small South African reservoirs

The reproductive and recruitment characteristics of moggel, Labeo umbratus, populations were examined in four small South African reservoirs. Reproduction, characterised by an extended spawning season, high fecundity, short incubation time and rapid larval development, appears to be ideally suited to the highly variable environment of small reservoirs. Evidence suggested that L. umbratus spawns in the reservoirs. In two reservoirs where samples were conducted monthly, GSI (gonado-somatic index) was positively correlated with both water temperature and day length, whilst the CPUE (catch per unit effort) of juveniles was not related to any environmental variable. The success of moggel spawning appeared to increase when there was early spring and consistent summer rainfall

Influence of baryons on the orbital structure of dark matter haloes

We explore the dynamical signatures imprinted by baryons on dark matter haloes during the formation process using the OverWhelmingly Large Simulations (OWLS), a set of state-of-the-art high-resolution cosmological hydrodynamical simulations. We present a detailed study of the effects of the implemented feedback prescriptions on the orbits of dark matter particles, stellar particles and subhaloes, analysing runs with no feedback, with stellar feedback and with feedback from supermassive black holes. We focus on the central regions (0.25 r_{200}) of haloes with virial masses ~ 6 x 10^{13} (~ 7 x 10^{11}) Msun/h at z = 0(2). We also investigate how the orbital content (relative fractions of the different orbital types) of these haloes depends on several key parameters such as their mass, redshift and dynamical state. The results of spectral analyses of the orbital content of these simulations are compared, and the change in fraction of box, tube and irregular orbits is quantified. Box orbits are found to dominate the orbital structure of dark matter haloes in cosmological simulations. There is a strong anticorrelation between the fraction of box orbits and the central baryon fraction. While radiative cooling acts to reduce the fraction of box orbits, strong feedback implementations result in a similar orbital distribution to that of the dark matter only case. The orbital content described by the stellar particles is found to be remarkably similar to that drawn from the orbits of dark matter particles, suggesting that either they have forgotten their dynamical history, or that subhaloes bringing in stars are not biased significantly with respect to the main distribution. The orbital content of the subhaloes is in broad agreement with that seen in the outer regions of the particle distributions.Comment: 18 pages, 13 figures, 3 tables. Accepted for publication in MNRA