Ball Court Map

This is a composite map of Structure 30 (STR 30), an ancient Mesoamerican ballcourt in Belize, excavated and documented as an archaeological site by Humboldt State University students and alumni. Each demarcated square or rectangle corresponds to a separate excavation map; field notes were consolidated and digitized individually, then pieced together based on alignment and overlaid atop an outline of the entire structure. Satellite imagery of the site was used as a reference to ensure accuracy. By this method, the previously isolated pockets of data, inherent to individual field notes, instead become parts of a greater whole, allowing a fuller picture of archaeological sites rather than what similar documentation normally permits

Structural modeling and functional analysis of the essential ribosomal processing protease Prp from Staphylococcus aureus

In Firmicutes and related bacteria, ribosomal large subunit protein L27 is encoded with a conserved N-terminal extension that is removed to expose residues critical for ribosome function. Bacteria encoding L27 with this N-terminal extension also encode a sequence-specific cysteine protease, Prp, which carries out this cleavage. In this work, we demonstrate that L27 variants with an un-cleavable N-terminal extension, or lacking the extension (pre-cleaved), are unable to complement an L27 deletion in Staphylococcus aureus. This indicates that N-terminal processing of L27 is not only essential but possibly has a regulatory role. Prp represents a new clade of previously uncharacterized cysteine proteases, and the dependence of S. aureus on L27 cleavage by Prp validates the enzyme as a target for potential antibiotic development. To better understand the mechanism of Prp activity, we analyzed Prp enzyme kinetics and substrate preference using a fluorogenic peptide cleavage assay. Molecular modeling and site-directed mutagenesis implicate several residues around the active site in catalysis and substrate binding, and support a structural model in which rearrangement of a flexible loop upon binding of the correct peptide substrate is required for the active site to assume the proper conformation. These findings lay the foundation for the development of antimicrobials that target this novel, essential pathway

Delineating the alteration zone at the big easy prospect using geophysical methods

The Big Easy Prospect is a low-sulphidation (LS) style epithermal system located along the northern extension of the Burin Peninsula High Sulphidation Belt in Newfoundland. It is believed to have formed during an extensional magmatic episode during the rifting of Avalonia from Gondwana in the late Neoproterozoic era. Despite its age, the Big Easy is well preserved which is likely due to rapid burial shortly after it was formed. Overlying sediments have since been eroded exposing what is believed to be the paleosurface of the Big Easy LS system. However, the property is covered extensively with overburden, forests, bogs, and ponds resulting in limited outcrop exposure. Therefore, delineating the alteration zone has proved to be challenging. The alteration zone associated with the auriferous mineralization should be detectable through the use of various geophysical methods. Several surveys were conducted over the property, including magnetics, gravity, and ground penetrating radar (GPR) in an attempt to gain a better understanding of the lateral and vertical extent of the alteration zone. These surveys were followed by two-dimensional forward and inverse modelling. Results of the magnetic survey mainly revealed features caused by mafic dykes. Since mafic dykes are noted to be spatially related to faulting in the area, a new potential boundary for the eastern extent of the epithermal alteration is identified. Bathymetry profiles of the bogs and lakes were created using data collected from the GPR survey. This allowed for proper corrections in the gravity data as well as more accurate modelling of the near subsurface. The gravity survey was the most effective for estimating the depth of the alteration zone since the altered material was slightly less dense than the surrounding units but further drilling is required to confirm this conclusion

Modelling microelectrode biosensors : free-flow calibration can substantially underestimate tissue concentrations

Microelectrode amperometric biosensors are widely used to measure concentrations of analytes in solution and tissue including acetylcholine, adenosine, glucose and glutamate. A great deal of experimental and modelling effort has been directed at quantifying the response of the biosensors themselves; however, the influence that the macroscopic tissue environment has on biosensor response has not been subjected to the same level of scrutiny. Here we identify an important issue in the way microelectrode biosensors are calibrated that is likely to have led to underestimations of analyte tissue concentrations. Concentration in tissue is typically determined by comparing the biosensor signal to that measured in free-flow calibration conditions. In a free-flow environment the concentration of the analyte at the outer surface of the biosensor can be considered constant. However, in tissue the analyte reaches the biosensor surface by diffusion through the extracellular space. Because the enzymes in the biosensor break down the analyte, a density gradient is set up resulting in a significantly lower concentration of analyte near the biosensor surface. This effect is compounded by the diminished volume fraction (porosity) and reduction in the diffusion coefficient due to obstructions (tortuosity) in tissue. We demonstrate this effect through modelling and experimentally verify our predictions in diffusive environments

Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.

The genome of Pelosinus fermentans JBW45, isolated from a chromium-contaminated site in Hanford, Washington, USA, has been completed with PacBio sequencing. Nine copies of the rRNA gene operon and multiple transposase genes with identical sequences resulted in breaks in the original draft genome and may suggest genomic instability of JBW45

Relationship between nitrate and nitrite stress responses of Desulfovibrio vulgaris Hildenborough and Desulfovibrio alaskensis G20

Many heavy metal-contaminated sites where nuclear weapons have been produced contain high concentrations of nitrate. Nitrate inhibits dissimilatory sulfate-reducing bacteria (SRB), bacteria known to precipitate heavy metals. An understanding of nitrate stress responses in SRB is necessary to predict responses in environmental settings. Desulfovibrio vulgaris Hildenborough and Desulfovibrio alaskensis G20, model SRB, offer the opportunity to identify the physiological and genetic changes that confer nitrate resistance. It is currently thought that nitrite production mediates nitrate inhibition of SRB (He et al., 2010). However, microarray studies have revealed few gene expression changes in common between nitrate- and nitrite-inhibited D. vulgaris cells (He et al., 2010). Since it has been shown that nitrite interacts with the dissimilatory sulfite reductase (Wolfe et al., 1994), it has been assumed that sulfite reduction is the sole target of nitrite inhibition (Haveman et al., 2004). Our results point to inhibition and resistance mechanisms for both nitrate and nitrite that are independent of sulfite reduction

A level playing ‘field’? A Bourdieusian analysis of the career aspirations of further education students on sports courses

There is currently a distinct dearth of research into how sports students’ career aspirations are formed during their post-compulsory education. This article, based on an ethnographic study of sport students in tertiary education, draws on data collected from two first-year cohorts (n = 34) on two different courses at a further education college in England. The study draws on ethnographic observations, and semi-structured group interviews, to examine in-depth the contrasting occupational perspectives emergent within these two groups of mainly working-class students, and how specific cultural practices affect students’ career aspirations. Utilising a Bourdieusian framework, the paper analyses the internalised, often latent cultural practices that impact upon these students’ diverse career aspirations. The hitherto under-researched dimension of inter-habitus interaction and also the application of doxa are outlined. The article reveals how the two student cohorts are situated within a complex field of relations, where struggles for legitimisation, academic accomplishment and numerous forms of lucrative capital become habituated. The study offers salient Bourdieusian-inspired insights into the career aspirations of these predominantly working-class students and the ways in which certain educational practices contribute to the production and reproduction of class inequalities

FlgN is required for flagellum based motility by <em>Bacillus subtilis</em>

The assembly of the bacterial flagellum is exquisitely controlled. Flagellar biosynthesis is underpinned by a specialized type III secretion system that allows export of proteins from the cytoplasm to the nascent structure. Bacillus subtilis regulates flagellar assembly using both conserved and species-specific mechanisms. Here, we show that YvyG is essential for flagellar filament assembly. We define YvyG as an orthologue of the Salmonella enterica serovar Typhimurium type III secretion system chaperone, FlgN, which is required for the export of the hook-filament junction proteins, FlgK and FlgL. Deletion of flgN (yvyG) results in a nonmotile phenotype that is attributable to a decrease in hag translation and a complete lack of filament polymerization. Analyses indicate that a flgK-flgL double mutant strain phenocopies deletion of flgN and that overexpression of flgK-flgL cannot complement the motility defect of a ΔflgN strain. Furthermore, in contrast to previous work suggesting that phosphorylation of FlgN alters its subcellular localization, we show that mutation of the identified tyrosine and arginine FlgN phosphorylation sites has no effect on motility. These data emphasize that flagellar biosynthesis is differentially regulated in B. subtilis from classically studied Gram-negative flagellar systems and questions the biological relevance of some posttranslational modifications identified by global proteomic approaches