BOLD Noise Assumptions in fMRI

This paper discusses the assumption of Gaussian noise in the blood-oxygenation-dependent (BOLD) contrast for functional MRI (fMRI). In principle, magnitudes in MRI images follow a Rice distribution. We start by reviewing differences between Rician and Gaussian noise. An analytic expression is derived for the null (resting-state) distribution of the difference between two Rician distributed images. This distribution is shown to be symmetric, and an exact expression for its standard deviation is derived. This distribution can be well approximated by a Gaussian, with very high precision for high SNR, and high precision for lower SNR. Tests on simulated and real MR images show that subtracting the time-series mean in fMRI yields asymmetrically distributed temporal noise. Subtracting a resting-state time series from the first results in symmetric and nearly Gaussian noise. This has important consequences for fMRI analyses using standard statistical tests

The Nature of Optical Features in the Inner Region of the 3C48 Host Galaxy

The well-known quasar 3C48 is the most powerful compact steep-spectrum radio-loud QSO at low redshifts. It also has two unusual optical features within the radius of the radio jet (~1"): (1) an anomalous, high-velocity narrow-line component, having several times as much flux as does the narrow-line component coinciding with the broad-line redshift; and (2) a bright continuum peak (3C48A) ~1" northeast of the quasar. Both of these optical features have been conjectured to be related to the radio jet. Here we explore these suggestions. We have obtained Gemini North GMOS integral-field-unit (IFU) spectroscopy of the central region around 3C48. We use the unique features of the IFU data to remove unresolved emission at the position of the quasar. The resolved emission at the wavelength of the high-velocity component is peaked <~0.25" north of the quasar, at virtually the same position angle as the base of the radio jet. These observations appear to confirm that this high-velocity gas is connected with the radio jet. However, most of the emission comes from a region where the jet is still well collimated, rather than from the regions where the radio maps indicate strong interaction with an external medium. We also present the results of HST STIS spectroscopy of 3C48A. We show that 3C48A is dominated by stars with a luminosity-weighted age of ~1.4 X 10^8 years, substantially older than any reasonable estimate for the age of the radio source. Our IFU data indicate a similar age. Thus, 3C48A almost certainly cannot be attributed to jet-induced star formation. The host galaxy of 3C48 is clearly the result of a merger, and 3C48A seems much more likely to be the distorted nucleus of the merging partner, in which star formation was induced during the previous close passage.Comment: 10 pages, accepted by The Astrophysical Journa

3C 48: Stellar Populations and the Kinematics of Stars and Gas in the Host Galaxy

We present deep Keck LRIS spectroscopy of the host galaxy of 3C 48. Our observations at various slit positions sample the different luminous components near the quasar, including the apparent tidal tail to the NW and several strong emission line regions. By fitting Bruzual & Charlot (1996) population synthesis models to our spectra, we obtain ages for the most recent major episodes of star formation in various parts of the host galaxy covered by our slits. There is vigorous current star formation in regions just NE and SE of the quasar and post-starburst regions with ages up to ~10^8 years in other parts of the host galaxy, but most of the NW tidal tail shows no sign of significant recent star formation. We use these model fits, together with the kinematics of the stars and gas, to outline a plausible evolutionary history for the host galaxy, its recent starburst activity, the triggering of the quasar, and the interaction of the radio jet with the ambient gas. There is strong evidence that the 3C 48 host is an ongoing merger, and that it is probably near the peak of its starburst activity. Nevertheless, the quasar itself seems to suffer little extinction, perhaps because we are viewing it along a particularly favorable line-of-sight.Comment: 27 pages plus 11 figures (7 postscript, 4 gif). Postscript version including figures (1840 kb) available at http://www.ifa.hawaii.edu/~canaguby/preprints.html . Accepted for publication in Ap

The Self-Taught Marketers Guide to Creating an Annual Report

Objective To produce an easy-to-read, visually appealing, 1-4 page annual report for the University of Maryland, Baltimore’s Health Sciences and Human Services Library (HSHSL). The report should be a mix of interesting statistics, highlights, stories, quotes, and photographs to promote the HSHSL’s annual accomplishments to the campus. Methods We gather all of the stories and statistics we think will be eligible material for the annual report, pulling content and ideas from: newsletters, workshops, blog posts, events, exhibits, and meetings with division and department heads. An annual report committee and visual designer decide upon the top stories and statistics, focusing upon high-impact events, meaningful statistics, and attractive design, images, and photographs to craft the report. We keep in mind that the report is meant to be read by non-librarians, and that the language and messages need to be understandable to our larger campus community.Results This will be our 5th year producing an annual report for the HSHSL. The process has become more streamlined and less time-consuming as we have become familiar with where to source content, design principles, and how to manage space limitations. This has decreased the amount of time it takes to produce the report and the number of iterations we go through before achieving our final product. Additionally, other libraries have been inspired by our designs and created their own colorful Annual Reports based on our layouts and ideas. Conclusions In our next report we plan to include a survey link to try to elicit feedback from our readers. We would like to know if the report was useful to them and if there is other information they would be interested to see in future reports

Neutron-induced background in the CONUS experiment

CONUS is a novel experiment aiming at detecting elastic neutrino nucleus scattering in the fully coherent regime using high-purity Germanium (Ge) detectors and a reactor as antineutrino ($\bar\nu$) source. The detector setup is installed at the commercial nuclear power plant in Brokdorf, Germany, at a very small distance to the reactor core in order to guarantee a high flux of more than 10$^{13}\bar\nu$/(s$\cdot$cm$^2$). For the experiment, a good understanding of neutron-induced background events is required, as the neutron recoil signals can mimic the predicted neutrino interactions. Especially neutron-induced events correlated with the thermal power generation are troublesome for CONUS. On-site measurements revealed the presence of a thermal power correlated, highly thermalized neutron field with a fluence rate of (745$\pm$30)cm$^{-2}$d$^{-1}$. These neutrons that are produced by nuclear fission inside the reactor core, are reduced by a factor of $\sim$10$^{20}$ on their way to the CONUS shield. With a high-purity Ge detector without shield the $\gamma$-ray background was examined including highly thermal power correlated $^{16}$N decay products as well as $\gamma$-lines from neutron capture. Using the measured neutron spectrum as input, it was shown, with the help of Monte Carlo simulations, that the thermal power correlated field is successfully mitigated by the installed CONUS shield. The reactor-induced background contribution in the region of interest is exceeded by the expected signal by at least one order of magnitude assuming a realistic ionization quenching factor of 0.2.Comment: 28 pages, 28 figure

Achieving mouse-level strategic evasion performance using real-time computational planning

Planning is an extraordinary ability in which the brain imagines and then enacts evaluated possible futures. Using traditional planning models, computer scientists have attempted to replicate this capacity with some level of success but ultimately face a reoccurring limitation: as the plan grows in steps, the number of different possible futures makes it intractable to determine the right sequence of actions to reach a goal state. Based on prior theoretical work on how the ecology of an animal governs the value of spatial planning, we developed a more efficient biologically-inspired planning algorithm, TLPPO. This algorithm allows us to achieve mouselevel predator evasion performance with orders of magnitude less computation than a widespread algorithm for planning in the situations of partial observability that typify predator-prey interactions. We compared the performance of a real-time agent using TLPPO against the performance of live mice, all tasked with evading a robot predator. We anticipate these results will be helpful to planning algorithm users and developers, as well as to areas of neuroscience where robot-animal interaction can provide a useful approach to studying the basis of complex behaviors.Comment: 6 pages, 4 figures, ICRA 202

Phylogenetic relationships of African green snakes (genera Philothamnus and Hapsidophrys) from São Tomé, Príncipe and Annobon islands based on mtDNA sequences, and comments on their colonization and taxonomy

Mitochondrial sequences (16S rRNA and cytochrome b) of the colubrine snake genera Philothamnus and Hapsidophrys were analysed. Samples were obtained from three volcanic islands in the Gulf of Guinea. The main objective was to infer phylogenetic relationships between the taxa and to trace back the colonization patterns of the group. Both insular species, Philothamnus girardi and Philothamnus thomensis, form a monophyletic unit indicating a single colonization event of one island (probably São Tomé) followed by dispersal to Annobon. Genetic divergence was found to be relatively low when compared with other Philothamnus species from the African mainland, but sufficient to consider the two taxa as distinct sister species. Here we also present evidence on the distinct phylogenetic position of Hapsidophrys sp. from the island of Príncipe, which should be considered as a distinct species, Hapsidophrys principis, a sister taxon of H. smaragdina.info:eu-repo/semantics/publishedVersio

Pearling: stroke segmentation with crusted pearl strings

We introduce a novel segmentation technique, called Pearling, for the semi-automatic extraction of idealized models of networks of strokes (variable width curves) in images. These networks may for example represent roads in an aerial photograph, vessels in a medical scan, or strokes in a drawing. The operator seeds the process by selecting representative areas of good (stroke interior) and bad colors. Then, the operator may either provide a rough trace through a particular path in the stroke graph or simply pick a starting point (seed) on a stroke and a direction of growth. Pearling computes in realtime the centerlines of the strokes, the bifurcations, and the thickness function along each stroke, hence producing a purified medial axis transform of a desired portion of the stroke graph. No prior segmentation or thresholding is required. Simple gestures may be used to trim or extend the selection or to add branches. The realtime performance and reliability of Pearling results from a novel disk-sampling approach, which traces the strokes by optimizing the positions and radii of a discrete series of disks (pearls) along the stroke. A continuous model is defined through subdivision. By design, the idealized pearl string model is slightly wider than necessary to ensure that it contains the stroke boundary. A narrower core model that fits inside the stroke is computed simultaneously. The difference between the pearl string and its core contains the boundary of the stroke and may be used to capture, compress, visualize, or analyze the raw image data along the stroke boundary

Resolution of the Distance Ambiguity for Galactic HII Regions

We resolve the kinematic distance ambiguity for 266 inner Galaxy HII regions out of a sample of 291 using existing HI and 13CO sky surveys. Our sample contains all HII regions with measured radio recombination line (RRL) emission over the extent of the 13CO Boston University-Five College Radio Astronomy Observatory Galactic Ring Survey (18 deg, < l < 55 deg. and |b| < 1) and contains ultra compact, compact, and diffuse HII regions. We use two methods for resolving the distance ambiguity for each HII region: HI emission/absorption (HIEA) and HI self-absorption (HISA). We find that the HIEA and HISA methods can resolve the distance ambiguity for 72% and 87% of our sample, respectively. When projected onto the Galactic plane, this large sample appears to reveal aspects of Galactic structure, with spiral arm-like features at Galactocentric radii of 4.5 and 6 kpc, and a lack of HII regions within 3.5 kpc of the Galactic center. Our HII regions are approximately in the ratio of 2 to 1 for far verses near distances. The ratio of far to near distances for ultra-compact HII regions is 2.2 to 1. Compact HII regions are preferentially at the near distance; their ratio of far to near distances is 1.6 to 1. Diffuse HII regions are preferentially at the far distance; their ratio of far to near distances is 3.8 to 1. This implies that the distinction between ultra compact and compact HII regions is due largely to distance, and that the large angular size of diffuse HII regions is not due solely to proximity to the Sun.Comment: Accepted to Ap

Constraints on elastic neutrino nucleus scattering in the fully coherent regime from the CONUS experiment

We report the best limit on coherent elastic scattering of electron antineutrinos emitted from a nuclear reactor off germanium nuclei. The measurement was performed with the CONUS detectors positioned at 17.1m from the 3.9GWth reactor core of the nuclear power plant in Brokdorf, Germany. The antineutrino energies of less than 10 MeV assure interactions in the fully coherent regime. The analyzed dataset includes 248.7 kgd with the reactor turned on and background data of 58.8 kgd with the reactor off. With a quenching parameter of k = 0.18 for germanium, we determined an upper limit on the number of neutrino events of 85 in the region of interest at 90% confidence level. This new CONUS dataset disfavors quenching parameters above k = 0.27, under the assumption of standard-model-like coherent scattering of the reactor antineutrinos