Development and application of the GIM code for the Cyber 203 computer

The GIM computer code for fluid dynamics research was developed. Enhancement of the computer code, implicit algorithm development, turbulence model implementation, chemistry model development, interactive input module coding and wing/body flowfield computation are described. The GIM quasi-parabolic code development was completed, and the code used to compute a number of example cases. Turbulence models, algebraic and differential equations, were added to the basic viscous code. An equilibrium reacting chemistry model and implicit finite difference scheme were also added. Development was completed on the interactive module for generating the input data for GIM. Solutions for inviscid hypersonic flow over a wing/body configuration are also presented

Properties of Thirteen Viruses and Virus Variants Obtained from Eight Isolates of the Wheat Take-All Fungus, Gaeumannomyces graminis var. tritici.

The properties of polyhedral double-stranded ( s)RNA virus particles obtained from eight isolates of the wheat take-all fungus, Gaeumannomyces graminis var. tritici, have been investigated. Thirteen viruses and virus variants were distinguished and these were classified into three groups on the basis of serological and physical properties of the virus particles; viruses in a group were related serologicaUy to other members of the same group, but unrelated serologically to members of other groups. Group I viruses had particles of diam. 35 nm sedimenting at 109 to 126S; the virus capsid contained one polypeptide species, mol. wt. 54 × l03 to 60 × 103 and virus dsRNA consisted of two to four components, mol. wt. 1.0 x 10 6 tO I-3 X 106. Group II viruses had particles of diam. 35 nm sedimenting at 133 to 140S; the virus capsid contained one polypeptide species, tool. wt. 68 × 103 to 73 x 103 and virus dsRNA consisted of two to four components with mol. wt. 1.39 × 106 to 1.60 × l06. Group III viruses had particles of diam. 40 nm sedimenting at 159 to 163S; the viru

Multiplication and Growth Inhibition Activity Assays for the Zoonotic Malaria Parasite, Plasmodium knowlesi.

Malaria remains a major cause of morbidity and mortality globally. Clinical symptoms of the disease arise from the growth and multiplication of Plasmodium parasites within the blood of the host. Thus in vitro assays to determine how drug, antibody and genetic perturbations affect the growth rate of Plasmodium parasites are essential for the development of new therapeutics and improving our understanding of parasite biology. As both P. falciparum and P. knowlesi can be maintained in culture with human red blood cells, the effect of antimalarial drugs and inhibitory antibodies that target the invasion capacity of Plasmodium parasites are routinely investigated by using multiplication assays or growth inhibition assays against these two species. This protocol gives detailed step-by-step procedures to carry out flow cytometry-based multiplication assays and growth inhibition activity assays to test neutralizing antibodies based on the activity of the parasite enzyme lactate dehydrogenase of Plasmodium knowlesi adapted to human red blood cell culture. Whilst similar assays are well established for P. falciparum, P. knowlesi is more closely related to all other human infective species ( Pacheco et al., 2018 ) and so can be used as a surrogate for testing drugs and vaccines for other malaria species such as P. vivax, which is the most widespread cause of malaria outside of Africa, but cannot yet be cultured under laboratory conditions

Lithospheric Structure and Tectonic Processes Constrained by Microearthquake Activity at the Central Ultraslow-Spreading Southwest Indian Ridge (49.2° to 50.8°E)

Beneath ultra‐slow spreading ridges, the oceanic lithosphere remains poorly understood. Using recordings from a temporary array of ocean bottom seismometers, we here report a ~17‐days‐long microearthquake study on two segments (27 and 28) of the ultra‐slow spreading Southwest Indian Ridge (49.2° to 50.8° E). A total of 214 locatable microearthquakes are recorded; seismic activity appears to be concentrated within the west median valley at segment 28 and adjacent nontransform discontinuities (NTDs). Earthquakes reach a maximum depth of ~20 km beneath the seafloor, and they mainly occur in the mantle, implying a cold and thick brittle lithosphere. The relatively uniform brittle/ductile boundary beneath segment 28 suggests that there is no focused melting in this region. The majority of earthquakes are located below the Moho interface, and a 5‐km‐thick aseismic zone is present beneath segment 28 and adjacent NTDs. At the Dragon Flag hydrothermal vent field along segment 28, the presence of a detachment fault has been inferred from geomorphic features and seismic tomography. Our seismicity data show that this detachment fault deeply penetrates into the mantle with a steeply dipping (~65°) interface, and it appears to rotate to a lower angle in the upper crust, with ~55° of rollover. There is a virtual seismic gap beneath magmatic segment 27, which may be connected to the presence of an axial magma chamber beneath the spreading centre as well as focused melting; in this scenario, the increased magma supply produces a broad, elevated temperature environment which suppresses earthquake generation

Coxsackievirus B5 infection induces dysregulation of microRNAs predicted to target known type 1 diabetes risk genes in human pancreatic islets

Extensive research has identified enterovirus (EV) infections as key environmental triggers of type 1 diabetes. However, the underlying molecular mechanisms via which EVs contribute to the pathogenesis of type 1 diabetes remain unclear. Given that EVs dysregulate host microRNAs (miRNAs), which function as key regulators of β-cell biology, we investigated the impact of coxsackievirus B5 (CVB5) infection on the cellular expression of miRNAs within human islets. Using high-throughput quantitative PCR nanofluidics arrays, the expression of 754 miRNAs was examined in CVB5-infected human pancreatic islets. In total, 33 miRNAs were significantly dysregulated (≥ threefold difference) in the infected compared with control islets (P < 0.05). Subsequently, these differentially expressed miRNAs were predicted to target mRNAs of 57 known type 1 diabetes risk genes that collectively mediate various biological processes, including the regulation of cell proliferation, cytokine production, the innate immune response, and apoptosis. In conclusion, we report the first global miRNA expression profiling of CVB5-infected human pancreatic islets. We propose that EVs disrupt the miRNA-directed suppression of proinflammatory factors within β-cells, thereby resulting in an exacerbated antiviral immune response that promotes β-cell destruction and eventual type 1 diabetes

Antagonism of STAT3 signalling by Ebola virus

Many viruses target signal transducers and activators of transcription (STAT) 1 and 2 to antagonise antiviral interferon signalling, but targeting of signalling by other STATs/cytokines, including STAT3/interleukin 6 that regulate processes important to Ebola virus (EBOV) haemorrhagic fever, is poorly defined. We report that EBOV potently inhibits STAT3 responses to interleukin-6 family cytokines, and that this is mediated by the interferon-antagonist VP24. Mechanistic analysis indicates that VP24 effects a unique strategy combining distinct karyopherin-dependent and karyopherin-independent mechanisms to antagonise STAT3-STAT1 heterodimers and STAT3 homodimers, respectively. This appears to reflect distinct mechanisms of nuclear trafficking of the STAT3 complexes, revealed for the first time by our analysis of VP24 function. These findings are consistent with major roles for global inhibition of STAT3 signalling in EBOV infection, and provide new insights into the molecular mechanisms of STAT3 nuclear trafficking, significant to pathogen-host interactions, cell physiology and pathologies such as cancer

Converting a series in \lambda to a series in \lambda^{-1}

We introduce a transformation for converting a series in a parameter, \lambda, to a series in the inverse of the parameter \lambda^{-1}. By applying the transform on simple examples, it becomes apparent that there exist relations between convergent and divergent series, and also between large- and small-coupling expansions. The method is also applied to the divergent series expansion of Euler-Heisenberg-Schwinger result for the one-loop effective action for constant background magnetic (or electric) field. The transform may help us gain some insight about the nature of both divergent (Borel or non-Borel summable series) and convergent series and their relationship, and how both could be used for analytical and numerical calculations.Comment: 7 pages, Latex, 3 figures; Typos corrected. To appear in Journal of Physics A: Math and Ge

Equilibrium properties of self-interacting neutrinos in the quasi-particle approach

In this work a neutrino gas in equilibrium is studied both at T=0 and at finite temperature. Neutrinos are treated as massive Dirac quasi-particles with two generations. We include self-interactions among the neutrinos via neutral currents, as well as the interaction with a background of matter. To obtain the equilibrium properties we use Wigner function techniques. To account for corrections beyond the Hartree approximation, we also introduce correlation functions. We prove that, under the quasi-particle approximation, these correlation functions can be expressed as products of Wigner functions. We analyze the main properties of the neutrino eigenmodes in the medium, such as effective masses and mixing angle. We show that the formulae describing these quantities will differ with respect to the case with no self-interactions.Comment: 17 pages, no figure