Identification and characterization of DAMs mutations associated with early blooming in sweet cherry, and validation of DNA-based markers for selection

Dormancy release and bloom time of sweet cherry cultivars depend on the environment and the genotype. The knowledge of these traits is essential for cultivar adaptation to different growing areas, and to ensure fruit set in the current climate change scenario. In this work, the major sweet cherry bloom time QTL qP-BT1.1m (327 Kbs; Chromosome 1) was scanned for candidate genes in the Regina cv genome. Six MADS-box genes (PavDAMs), orthologs to peach and Japanese apricot DAMs, were identified as candidate genes for bloom time regulation. The complete curated genomic structure annotation of these genes is reported. To characterize PavDAMs intra-specific variation, genome sequences of cultivars with contrasting chilling requirements and bloom times (N = 13), were then mapped to the ‘Regina’ genome. A high protein sequence conservation (98.8–100%) was observed. A higher amino acid variability and several structural mutations were identified in the low-chilling and extra-early blooming cv Cristobalina. Specifically, a large deletion (694 bp) upstream of PavDAM1, and various INDELs and SNPs in contiguous PavDAM4 and -5 UTRs were identified. PavDAM1 upstream deletion in ‘Cristobalina’ revealed the absence of several cis-acting motifs, potentially involved in PavDAMs expression. Also, due to this deletion, a non-coding gene expressed in late-blooming ‘Regina’ seems truncated in ‘Cristobalina’. Additionally, PavDAM4 and -5 UTRs mutations revealed different splicing variants between ‘Regina’ and ‘Cristobalina’ PavDAM5. The results indicate that the regulation of PavDAMs expression and post-transcriptional regulation in ‘Cristobalina’ may be altered due to structural mutations in regulatory regions. Previous transcriptomic studies show differential expression of PavDAM genes during dormancy in this cultivar. The results indicate that ‘Cristobalina’ show significant amino acid differences, and structural mutations in PavDAMs, that correlate with low-chilling and early blooming, but the direct implication of these mutations remains to be determined. To complete the work, PCR markers designed for the detection of ‘Cristobalina’ structural mutations in PavDAMs, were validated in an F2 population and a set of cultivars. These PCR markers are useful for marker-assisted selection of early blooming seedlings, and probably low-chilling, from ‘Cristobalina’, which is a unique breeding source for these traits. © Copyright © 2021 Calle, Grimplet, Le Dantec and Wünsch

The fragmentation of expanding shells II: Thickness matters

We study analytically the development of gravitational instability in an expanding shell having finite thickness. We consider three models for the radial density profile of the shell: (i) an analytic uniform-density model, (ii) a semi-analytic model obtained by numerical solution of the hydrostatic equilibrium equation, and (iii) a 3D hydrodynamic simulation. We show that all three profiles are in close agreement, and this allows us to use the first model to describe fragments in the radial direction of the shell. We then use non-linear equations describing the time-evolution of a uniform oblate spheroid to derive the growth rates of shell fragments having different sizes. This yields a dispersion relation which depends on the shell thickness, and hence on the pressure confining the shell. We compare this dispersion relation with the dispersion relation obtained using the standard thin-shell analysis, and show that, if the confining pressure is low, only large fragments are unstable. On the other hand, if the confining pressure is high, fragments smaller than predicted by the thin-shell analysis become unstable. Finally, we compare the new dispersion relation with the results of 3D hydrodynamic simulations, and show that the two are in good agreement.Comment: 9 pages, 9 figures, accepted by MNRA

The SILCC project: III. Regulation of star formation and outflows by stellar winds and supernovae

We study the impact of stellar winds and supernovae on the multi-phase interstellar medium using three-dimensional hydrodynamical simulations carried out with FLASH. The selected galactic disc region has a size of (500 pc)$^2$ x $\pm$ 5 kpc and a gas surface density of 10 M$_{\odot}$/pc$^2$. The simulations include an external stellar potential and gas self-gravity, radiative cooling and diffuse heating, sink particles representing star clusters, stellar winds from these clusters which combine the winds from indi- vidual massive stars by following their evolution tracks, and subsequent supernova explosions. Dust and gas (self-)shielding is followed to compute the chemical state of the gas with a chemical network. We find that stellar winds can regulate star (cluster) formation. Since the winds suppress the accretion of fresh gas soon after the cluster has formed, they lead to clusters which have lower average masses (10$^2$ - 10$^{4.3}$ M$_{\odot}$) and form on shorter timescales (10$^{-3}$ - 10 Myr). In particular we find an anti-correlation of cluster mass and accretion time scale. Without winds the star clusters easily grow to larger masses for ~5 Myr until the first supernova explodes. Overall the most massive stars provide the most wind energy input, while objects beginning their evolution as B-type stars contribute most of the supernova energy input. A significant outflow from the disk (mass loading $\gtrsim$ 1 at 1 kpc) can be launched by thermal gas pressure if more than 50% of the volume near the disc mid-plane can be heated to T > 3x10$^5$ K. Stellar winds alone cannot create a hot volume-filling phase. The models which are in best agreement with observed star formation rates drive either no outflows or weak outflows.Comment: 23 pages; submitted to MNRA

THz-range free-electron laser ESR spectroscopy: techniques and applications in high magnetic fields

The successful use of picosecond-pulse free-electron-laser (FEL) radiation for the continuous-wave THz-range electron spin resonance (ESR) spectroscopy has been demonstrated. The combination of two linac-based FELs (covering the wavelength range of 4 - 250 $\mu$m) with pulsed magnetic fields up to 70 T allows for multi-frequency ESR spectroscopy in a frequency range of 1.2 - 75 THz with a spectral resolution better than 1%. The performance of the spectrometer is illustrated with ESR spectra obtained in the 2,2-diphenyl-1-picrylhydrazyl (DPPH) and the low-dimensional organic material (C$_6$H$_9$N$_2$)CuCl$_3$.Comment: 9 pages, 9 figures. Rev. Sci. Instrum., accepte

Enantiomerically pure quinoline-based κ-opioid receptor agonists: Chemoenzymatic synthesis and pharmacological evaluation

Racemi

Ionisation-induced star formation III: Effects of external triggering on the IMF in clusters

We report on Smoothed Particle Hydrodynamics (SPH) simulations of the impact on a turbulent $\sim2\times10^{3}$ M$_{\odot}$ star--forming molecular cloud of irradiation by an external source of ionizing photons. We find that the ionizing radiation has a significant effect on the gas morphology, but a less important role in triggering stars. The rate and morphology of star formation are largely governed by the structure in the gas generated by the turbulent velocity field, and feedback has no discernible effect on the stellar initial mass function. Although many young stars are to be found in dense gas located near an ionization front, most of these objects also form when feedback is absent. Ionization has a stronger effect in diffuse regions of the cloud by sweeping up low--density gas that would not otherwise form stars into gravitationally--unstable clumps. However, even in these regions, dynamical interactions between the stars rapidly erase the correlations between their positions and velocities and that of the ionization front.Comment: 12 pages, 16 figures (some downgraded to fit on astro-ph), accepted for publication in MNRA

Rede Leite: programa em rede de pesquisa-desenvolvimento em sistemas de produção com pecuária e leite no noroeste do Rio Grande do Sul.

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