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Single-spacecraft techniques for shock parameters estimation : A systematic approach

Spacecraft missions provide the unique opportunity to study the properties of collisionless shocks utilising in situ measurements. In the past years, several diagnostics have been developed to address key shock parameters using time series of magnetic field (and plasma) data collected by a single spacecraft crossing a shock front. A critical aspect of such diagnostics is the averaging process involved in the evaluation of upstream/downstream quantities. In this work, we discuss several of these techniques, with a particular focus on the shock obliquity (defined as the angle between the upstream magnetic field and the shock normal vector) estimation. We introduce a systematic variation of the upstream/downstream averaging windows, yielding to an ensemble of shock parameters, which is a useful tool to address the robustness of their estimation. This approach is first tested with a synthetic shock dataset compliant with the Rankine-Hugoniot jump conditions for a shock, including the presence of noise and disturbances. We then employ self-consistent, hybrid kinetic shock simulations to apply the diagnostics to virtual spacecraft crossing the shock front at various stages of its evolution, highlighting the role of shock-induced fluctuations in the parameters' estimation. This approach has the strong advantage of retaining some important properties of collisionless shock (such as, for example, the shock front microstructure) while being able to set a known, nominal set of shock parameters. Finally, two recent observations of interplanetary shocks from the Solar Orbiter spacecraft are presented, to demonstrate the use of this systematic approach to real events of shock crossings. The approach is also tested on an interplanetary shock measured by the four spacecraft of the Magnetospheric Multiscale (MMS) mission. All the Python software developed and used for the diagnostics (SerPyShock) is made available for the public, including an example of parameter estimation for a shock wave recently observed in-situ by the Solar Orbiter spacecraft.Peer reviewe

Menelaus' theorem, Clifford configurations and inversive geometry of the Schwarzian KP hierarchy

It is shown that the integrable discrete Schwarzian KP (dSKP) equation which constitutes an algebraic superposition formula associated with, for instance, the Schwarzian KP hierarchy, the classical Darboux transformation and quasi-conformal mappings encapsulates nothing but a fundamental theorem of ancient Greek geometry. Thus, it is demonstrated that the connection with Menelaus' theorem and, more generally, Clifford configurations renders the dSKP equation a natural object of inversive geometry on the plane. The geometric and algebraic integrability of dSKP lattices and their reductions to lattices of Menelaus-Darboux, Schwarzian KdV, Schwarzian Boussinesq and Schramm type is discussed. The dSKP and discrete Schwarzian Boussinesq equations are shown to represent discretizations of families of quasi-conformal mappings.Comment: 26 pages, 9 figure

Retrotransposon-based genetic diversity assessment in wild emmer wheat (Triticum turgidum ssp. dicoccoides)

Wild emmer wheat (Triticum turgidum ssp. dicoccoides) is the wild ancestor of all cultivated tetraploid and hexaploid wheats and harbors a large amount of genetic diversity. This diversity is expected to display eco-geographical patterns of variation, conflating gene flow, and local adaptation. As self-replicating entities comprising the bulk of genomic DNA in wheat, retrotransposons are expected to create predominantly neutral variation via their propagation. Here, we have examined the genetic diversity of 1 Turkish and 14 Israeli populations of wild emmer wheat, based on the retrotransposon marker methods IRAP and REMAP. The level of genetic diversity we detected was in agreement with previous studies that were performed with a variety of marker systems assaying genes and other genomic components. The genetic distances failed to correlate with the geographical distances, suggesting local selection on geographically widespread haplotypes (‘weak selection’). However, the proportion of polymorphic loci correlated with the population latitude, which may reflect the temperature and water availability cline. Genetic diversity correlated with longitude, the east being more montane. Principal component analyses on the marker data separated most of the populations.</p

Advances in perturbative thermal field theory

The progress of the last decade in perturbative quantum field theory at high temperature and density made possible by the use of effective field theories and hard-thermal/dense-loop resummations in ultrarelativistic gauge theories is reviewed. The relevant methods are discussed in field theoretical models from simple scalar theories to non-Abelian gauge theories including gravity. In the simpler models, the aim is to give a pedagogical account of some of the relevant problems and their resolution, while in the more complicated but also more interesting models such as quantum chromodynamics, a summary of the results obtained so far are given together with references to a few most recent developments and open problems.Comment: 84 pages, 18 figues, review article submitted to Reports on Progress in Physics; v2, v3: minor additions and corrections, more reference

Intratonsillar detection of 27 distinct viruses: A cross-sectional study

Palatine tonsils have been observed to harbor several distinct respiratory and herpesviruses in separate studies. In this study, the presence of these viruses in palatine tonsils was comprehensively studied in both children and adults. A cross-sectional analysis of 181 patients (median age 22 years; range, 2.6-66) operated for a benign tonsillar disease was conducted. Real-time polymerase chain reaction was performed to detect 27 distinct viruses in all: eight human herpesviruses, 16 respiratory viruses, parvo B19, and polyoma BK/JC viruses. Clinical characteristics of the patients and underlying conditions were evaluated. In total, 92% of patients had virus detected in tonsils (Epstein-Barr virus 72%, human herpesvirus 7, and 6B 54% and 16%, respectively, enterovirus 18%, parvovirus B19 7% and the rest <4%). No herpes simplex virus 2, varicella zoster virus, polyoma JC virus, parainfluenza-, metapneumo-, or coronaviruses were found. Enterovirus was more common in children and was frequently observed in the presence of HHV6B. None of the viruses showed a positive association to the tonsillar disease. Respiratory symptoms were not associated with the prevalence of viruses. This study comprehensively reports a cross-sectional view of intratonsillar virus infections in elective tonsillectomy patients in a wide age range cohort. Tonsils are a major virus reservoir for distinct herpes and respiratory viruses without a positive association with tonsillar disease or respiratory symptoms

Annual variations in the near-Earth solar wind

Earth’s orbit and rotation produces systematic variations in geomagnetic activity, most notably via the changing orientation of the dayside magnetospheric magnetic field with respect to the heliospheric magnetic field (HMF). Aside from these geometric effects, it is generally assumed that the solar wind in near-Earth is uniformly sampled. But systematic changes in the intrinsic solar wind conditions in near-Earth space could arise due to the annual variations in Earth heliocentric distance and heliographic latitude. In this study, we use 24 years of Advanced Composition Explorer data to investigate the annual variations in the scalar properties of the solar wind, namely the solar wind proton density, the radial solar wind speed and the HMF intensity. All parameters do show some degree of systematic annual variation, with amplitudes of around 10 to 20%. For HMF intensity, the variation is in phase with the Earth’s heliocentric distance variation, and scaling observations for distance largely explains the observed variation. For proton density and solar wind speed, however, the phase of the annual variation is inconsistent with Earth’s heliocentric distance. Instead, we attribute the variations in speed and density to Earth’s heliographic latitude variation and systematic sampling of higher speed solar wind at higher latitudes. Indeed, these annual variations are most strongly ordered at solar minimum. Conversely, combining scalar solar wind parameters to produce estimates of dynamic pressure and potential power input to the magnetosphere results in solar maximum exhibiting a greater annual variation, with an amplitude of around 40%. This suggests Earth’s position in the heliosphere makes a significant contribution to annual variations in space weather, in addition to the already well-studied geometric effects

Multiple formin proteins participate in glioblastoma migration

Background: The prognosis of glioblastoma remains poor, related to its diffuse spread within the brain. There is an ongoing search for molecular regulators of this particularly invasive behavior. One approach is to look for actin regulating proteins that might be targeted by future anti-cancer therapy. The formin family of proteins orchestrates rearrangement of the actin cytoskeleton in multiple cellular processes. Recently, the formin proteins mDia1 and mDia2 were shown to be expressed in glioblastoma in vitro, and their function could be modified by small molecule agonists. This finding implies that the formins could be future therapeutic targets in glioblastoma.Methods: In cell studies, we investigated the changes in expression of the 15 human formins in primary glioblastoma cells and commercially available glioblastoma cell lines during differentiation from spheroids to migrating cells using transcriptomic analysis and qRT-PCR. siRNA mediated knockdown of selected formins was performed to investigate whether their expression affects glioblastoma migration. Using immunohistochemistry, we studied the expression of two formins, FHOD1 and INF2, in tissue samples from 93 IDH-wildtype glioblastomas. Associated clinicopathological parameters and follow-up data were utilized to test whether formin expression correlates with survival or has prognostic value.Results: We found that multiple formins were upregulated during migration. Knockdown of individual formins mDia1, mDia2, FHOD1 and INF2 significantly reduced migration in most studied cell lines. Among the studied formins, knockdown of INF2 generated the greatest reduction in motility in vitro. Using immunohistochemistry, we demonstrated expression of formin proteins FHOD1 and INF2 in glioblastoma tissues. Importantly, we found that moderate/high expression of INF2 was associated with significantly impaired prognosis.Conclusions: Formins FHOD1 and INF2 participate in glioblastoma cell migration. Moderate/high expression of INF2 in glioblastoma tissue is associated with worse outcome. Taken together, our in vitro and tissue studies suggest a pivotal role for INF2 in glioblastoma. When specific inhibiting compounds become available, INF2 could be a target in the search for novel glioblastoma therapies.</div

FGF receptor genes and breast cancer susceptibility: results from the Breast Cancer Association Consortium

Background:Breast cancer is one of the most common malignancies in women. Genome-wide association studies have identified FGFR2 as a breast cancer susceptibility gene. Common variation in other fibroblast growth factor (FGF) receptors might also modify risk. We tested this hypothesis by studying genotyped single-nucleotide polymorphisms (SNPs) and imputed SNPs in FGFR1, FGFR3, FGFR4 and FGFRL1 in the Breast Cancer Association Consortium. Methods:Data were combined from 49 studies, including 53 835 cases and 50 156 controls, of which 89 050 (46 450 cases and 42 600 controls) were of European ancestry, 12 893 (6269 cases and 6624 controls) of Asian and 2048 (1116 cases and 932 controls) of African ancestry. Associations with risk of breast cancer, overall and by disease sub-type, were assessed using unconditional logistic regression. Results:Little evidence of association with breast cancer risk was observed for SNPs in the FGF receptor genes. The strongest evidence in European women was for rs743682 in FGFR3; the estimated per-allele odds ratio was 1.05 (95 confidence interval=1.02-1.09, P=0.0020), which is substantially lower than that observed for SNPs in FGFR2. Conclusion:Our results suggest that common variants in the other FGF receptors are not associated with risk of breast cancer to the degree observed for FGFR2. © 2014 Cancer Research UK