Chromium Isotope Behavior During Serpentinite Dehydration in Oceanic Subduction Zones

Fluids released through the dehydration of serpentinite can be rich in Cl, which enables the significant mobility of Cr in subduction zones. However, the Cr isotope behavior accompanying the mobility of Cr during serpentinite dehydration is still poorly constrained. Here, we report high-precision Cr isotope data for a unique suite of serpentinites that represent metamorphic products at different depths in oceanic subduction zones. Low-grade serpentinites affected by significant Cr loss during serpentinization exhibit remarkably higher δCr, while samples with Cr contents >∼1,800 ppm typically preserve mantle-like δCr. Antigorite serpentinites have an average δCr value of −0.17‰ ± 0.19‰ (n = 12, 2SD), which is statistically lower than those of low-grade serpentinite (−0.05‰ ± 0.30‰, n = 80, 2SD) and higher-grade chlorite harzburgite (−0.10‰ ± 0.27‰, n = 22, 2SD). This suggests that resolvable Cr isotope fractionation occurs during serpentinite dehydration, which is explained by the variability of Cr isotope behavior in the presence of Cl-bearing fluids at different dehydration stages. No obvious Cr isotope fractionation was found during chlorite harzburgite dehydration, probably related to the limited Cr mobility in a Cl-poor fluid. Other processes, such as melt extraction, external fluid influx and retrograde metamorphism, have negligible effects on the Cr isotope systematics of meta-serpentinites. Fluids released by serpentinite dehydration may have a great effect on the Cr isotope heterogeneity of mantle wedge peridotites and arc magmas.This study was supported by funds from the National Key R&D Program of China (2018YFA0702600), the Strategic Priority Research Program (B) of CAS (XDB41000000), the Natural Science Foundation of China (42073029, 41973004), the Fundamental Research Funds for the Central Universities, and pre-research Projects on Civil Aerospace Technologies No. D020204 funded by CNSA. C.J.G., J.A.P.N., M.M. and V.L.S.V. acknowledge grant RUSTED (PID2022-136471N-B-C21 & C22) funded by MICIN/AEI/10.13039/501100011033 and the FEDER program “Una manera de hacer Europa.” C.M. was funded by project PID2019-111715GB-I00/AEI/10.13039/501100011033. J.A.P.N. further acknowledges a Ramón y Cajal contract (RYC2018-024363-I) funded by MICIN/AEI/10.13039/501100011033 and the FSE program “FSE invierte en tu futuro,” and M.M. acknowledges postdoctoral fellowship n° Postdoc_21_00791 funded by the Junta de Andalucía (Consejeria de Conocimiento y Universidades), and EU funds FEDER and FSE. This research is part of the Junta de Andalucía research groups RNM-131 and RNM-374

The use of fishery and aquaculture by-products with Nannochloropsis sp. allows total dietary replacement of wild-caught fishmeal, fish oil and soy protein in European sea bass juveniles

Five experimental diets (CTRL, 50FMFO, 50FMFO-50MIC, 0FMFO-50MIC, 0FMFO-100MIC) were formulated to replace wild-caught fishmeal (FM), wild-caught fish oil (FO) and soy protein using fisheries, aquaculture byproducts (BP) and microalgae (MIC). Fifty European sea bass juveniles were distributed in 15 tanks (initial body weight 46.66 ± 0.04 g) and reared in a recirculating aquaculture system for 88 days. Temperature, salinity, oxygen and photoperiod were kept constant throughout the experiment (22 ± 0.5 ◦C, 25 g L− 1 and 8.0 ± 1.0 mg L− 1, 12:12 light/dark, respectively). Growth, feed intake (FI), proximal composition, nutritional index, apparent digestibility, somatometric indexes, blood plasma biochemistry and digestive enzyme activity were evaluated. Also, gut microbiota composition was assessed through next-generation sequencing. Results showed that growth performance and feed digestibility were not affected by FM, FO and soy replacement using BP and MIC. Dietary replacement of 100% FM and FO with circular substitutes and 50% replacement of soymeal with microalgae increased the activity of alkaline phosphatase and chymotrypsin. Moreover, the inclusion of BP and MIC had positive effects on the gut microbiota richness and abundance. In conclusion, the utilization of BP and MIC represents a valuable alternative to FM and FO as well as soy protein in feed for European sea bass juveniles

Proteomics Standards Initiative Extended FASTA Format

Mass-spectrometry-based proteomics enables the high-throughput identification and quantification of proteins, including sequence variants and post-translational modifications (PTMs) in biological samples. However, most workflows require that such variations be included in the search space used to analyze the data, and doing so remains challenging with most analysis tools. In order to facilitate the search for known sequence variants and PTMs, the Proteomics Standards Initiative (PSI) has designed and implemented the PSI extended FASTA format (PEFF). PEFF is based on the very popular FASTA format but adds a uniform mechanism for encoding substantially more metadata about the sequence collection as well as individual entries, including support for encoding known sequence variants, PTMs, and proteoforms. The format is very nearly backward compatible, and as such, existing FASTA parsers will require little or no changes to be able to read PEFF files as FASTA files, although without supporting any of the extra capabilities of PEFF. PEFF is defined by a full specification document, controlled vocabulary terms, a set of example files, software libraries, and a file validator. Popular software and resources are starting to support PEFF, including the sequence search engine Comet and the knowledge bases neXtProt and UniProtKB. Widespread implementation of PEFF is expected to further enable proteogenomics and top-down proteomics applications by providing a standardized mechanism for encoding protein sequences and their known variations. All the related documentation, including the detailed file format specification and example files, are available at http://www.psidev.info/peff

Secretome Signature of Invasive Glioblastoma Multiforme

The incurability of malignant glioblastomas is mainly attributed to their highly invasive nature coupled with resistance to chemo- and radiation therapy. Because invasiveness is partially dictated by the proteins these tumors secrete we used SILAC to characterize the secretomes of four glioblastoma cell lines (LN18, T98, U118 and U87). Although U87 and U118 cells both secreted high levels of well-known invasion promoting proteins, a Matrigel invasion assay showed U87 cells to be eight times more invasive than U118 cells, suggesting that additional proteins secreted by U87 cells may contribute to the highly invasive phenotype. Indeed, we identified a number of proteins highly or exclusively expressed by U87 cells as compared to the less invasive cell lines. The most striking of these include ADAM9, ADAM10, cathepsin B, cathepsin L1, osteopontin, neuropilin-1, semaphorin-7A, suprabasin and chitinase-3-like protein 1. U87 cells also expressed significantly low levels of some cell adhesion proteins such as periostin and EMILIN-1. Correlation of secretome profiles with relative levels of invasiveness using Pavlidis template matching further indicated potential roles for these proteins in U87 glioblastoma invasion. Antibody inhibition of CH3L1 reduced U87 cell invasiveness by 30%