Dark Matter at the Center and in the Halo of the Galaxy

All presently known stellar-dynamical constraints on the size and mass of the supermassive compact dark object at the Galactic center are consistent with a ball of self-gravitating, nearly non-interacting, degenerate fermions with mass between 76 and 491 keV, for degeneracy factor g=2. Sterile neutrinos of 76 keV mass, which are mixed with at least one of the active neutrinos with a mixing angele ~10^{-7}, are produced in about the right amount in the early Universe by incoherent resonant and non-resonant scattering of active neutrinos having asymmetry of ~0.01. The former process yields sterile neutrinos with a quasi-degenerate spectrum while the latter leads to a thermal spectrum. As the production mechanism of the sterile neutrino is consistent with the constraints from large scale structure formation, core collapse supernovae, and diffuse X-ray background, it could be the dark matter particle of the Universe.Comment: 6 pages, to appear in the Beyond 2003 conference proceeding

Sgr A^*: A supermassive black hole or a spatially extended object?

We report here on a calculation of possible orbits of the fast moving infrared source S1 which has been recently observed by Eckart and Genzel (1997) near the Galactic center. It is shown that tracking of the orbit of S1 or any other fast moving star near Sgr A^* offers a possibility of distinguishing between the supermassive black hole and extended object scenarios of Sgr A^*. In our calculations we assumed that the extended object at the Galactic center is a non-baryonic ball made of degenerate, self-gravitating heavy neutrino matter, as it has been recently proposed by Tsiklauri & Viollier (1998a,b).Comment: AASTEX, 5 postscript figs., submitted to ApJ Let

Biogeochemical modelling of anaerobic vs. aerobic methane oxidation in a meromictic crater lake (Lake Pavin, France)

International audienceMethane is a powerful greenhouse gas and its concentration in the atmosphere has increased over the past decades. Methane produced by methanogenic Archae can be consumed through aerobic and anaerobic oxidation pathways. In anoxic conditions found in freshwater environments such as meromictic lakes, CH4 oxidation pathways involving different terminal electron acceptors such as NO 3 , SO2 4 , and oxides of Fe and Mn are thermodynamically possible. In this study, a reactive transport model was developed to assess the relative significance of the different pathways of CH4 consumption in the water column of Lake Pavin. In most cases, the model reproduced experimental data collected from the field from June 2006 to June 2007. Although the model and the field measurements suggest that anaerobic CH4 oxidation may contribute to CH4 consumption in the water column of Lake Pavin, aerobic oxidation remains the major sink of CH4 in this lake

Genetic and Computational Identification of a Conserved Bacterial Metabolic Module

We have experimentally and computationally defined a set of genes that form a conserved metabolic module in the α-proteobacterium Caulobacter crescentus and used this module to illustrate a schema for the propagation of pathway-level annotation across bacterial genera. Applying comprehensive forward and reverse genetic methods and genome-wide transcriptional analysis, we (1) confirmed the presence of genes involved in catabolism of the abundant environmental sugar myo-inositol, (2) defined an operon encoding an ABC-family myo-inositol transmembrane transporter, and (3) identified a novel myo-inositol regulator protein and cis-acting regulatory motif that control expression of genes in this metabolic module. Despite being encoded from non-contiguous loci on the C. crescentus chromosome, these myo-inositol catabolic enzymes and transporter proteins form a tightly linked functional group in a computationally inferred network of protein associations. Primary sequence comparison was not sufficient to confidently extend annotation of all components of this novel metabolic module to related bacterial genera. Consequently, we implemented the Graemlin multiple-network alignment algorithm to generate cross-species predictions of genes involved in myo-inositol transport and catabolism in other α-proteobacteria. Although the chromosomal organization of genes in this functional module varied between species, the upstream regions of genes in this aligned network were enriched for the same palindromic cis-regulatory motif identified experimentally in C. crescentus. Transposon disruption of the operon encoding the computationally predicted ABC myo-inositol transporter of Sinorhizobium meliloti abolished growth on myo-inositol as the sole carbon source, confirming our cross-genera functional prediction. Thus, we have defined regulatory, transport, and catabolic genes and a cis-acting regulatory sequence that form a conserved module required for myo-inositol metabolism in select α-proteobacteria. Moreover, this study describes a forward validation of gene-network alignment, and illustrates a strategy for reliably transferring pathway-level annotation across bacterial species.</p

General-Relativistic Thomas-Fermi model

A system of self-gravitating massive fermions is studied in the framework of the general-relativistic Thomas-Fermi model. We study the properties of the free energy functional and its relation to Einstein's field equations. A self-gravitating fermion gas we then describe by a set of Thomas-Fermi type self-consistency equations.Comment: 7 pages, LaTex, to appear in Gen. Rel. Gra

Gravastar Solutions with Continuous Pressures and Equation of State

We study the gravitational vacuum star (gravastar) configuration as proposed by other authors in a model where the interior de Sitter spacetime segment is continuously extended to the exterior Schwarzschild spacetime. The multilayered structure in previous papers is replaced by a continuous stress-energy tensor at the price of introducing anisotropy in the (fluid) model of the gravastar. Either with an ansatz for the equation of state connecting the radial $p_r$ and tangential $p_t$ pressure or with a calculated equation of state with non-homogeneous energy/fluid density, solutions are obtained which in all aspects satisfy the conditions expected for an anisotropic gravastar. Certain energy conditions have been shown to be obeyed and a polytropic equation of state has been derived. Stability of the solution with respect to possible axial perturbation is shown to hold.Comment: 19 pages, 9 figures. Latest version contains new and updated references along with some clarifying remarks in the stability analysi

The Pioneer anomaly in the context of the braneworld scenario

We examine the Pioneer anomaly - a reported anomalous acceleration affecting the Pioneer 10/11, Galileo and Ulysses spacecrafts - in the context of a braneworld scenario. We show that effects due to the radion field cannot account for the anomaly, but that a scalar field with an appropriate potential is able to explain the phenomena. Implications and features of our solution are analyzed.Comment: Final version to appear at Classical & Quantum Gravity. Plainlatex 19 page

Spin structure of the nucleon: QCD evolution, lattice results and models

The question how the spin of the nucleon is distributed among its quark and gluon constituents is still a subject of intense investigations. Lattice QCD has progressed to provide information about spin fractions and orbital angular momentum contributions for up- and down-quarks in the proton, at a typical scale \mu^2~4 GeV^2. On the other hand, chiral quark models have traditionally been used for orientation at low momentum scales. In the comparison of such model calculations with experiment or lattice QCD, fixing the model scale and the treatment of scale evolution are essential. In this paper, we present a refined model calculation and a QCD evolution of lattice results up to next-to-next-to-leading order. We compare this approach with the Myhrer-Thomas scenario for resolving the proton spin puzzle.Comment: 11 pages, 6 figures, equation (9) has been corrected leading to a revised figure 1b. Revision matches published versio

Genetic and Computational Identification of a Conserved Bacterial Metabolic Module

We have experimentally and computationally defined a set of genes that form a conserved metabolic module in the α-proteobacterium Caulobacter crescentus and used this module to illustrate a schema for the propagation of pathway-level annotation across bacterial genera. Applying comprehensive forward and reverse genetic methods and genome-wide transcriptional analysis, we (1) confirmed the presence of genes involved in catabolism of the abundant environmental sugar myo-inositol, (2) defined an operon encoding an ABC-family myo-inositol transmembrane transporter, and (3) identified a novel myo-inositol regulator protein and cis-acting regulatory motif that control expression of genes in this metabolic module. Despite being encoded from non-contiguous loci on the C. crescentus chromosome, these myo-inositol catabolic enzymes and transporter proteins form a tightly linked functional group in a computationally inferred network of protein associations. Primary sequence comparison was not sufficient to confidently extend annotation of all components of this novel metabolic module to related bacterial genera. Consequently, we implemented the Graemlin multiple-network alignment algorithm to generate cross-species predictions of genes involved in myo-inositol transport and catabolism in other α-proteobacteria. Although the chromosomal organization of genes in this functional module varied between species, the upstream regions of genes in this aligned network were enriched for the same palindromic cis-regulatory motif identified experimentally in C. crescentus. Transposon disruption of the operon encoding the computationally predicted ABC myo-inositol transporter of Sinorhizobium meliloti abolished growth on myo-inositol as the sole carbon source, confirming our cross-genera functional prediction. Thus, we have defined regulatory, transport, and catabolic genes and a cis-acting regulatory sequence that form a conserved module required for myo-inositol metabolism in select α-proteobacteria. Moreover, this study describes a forward validation of gene-network alignment, and illustrates a strategy for reliably transferring pathway-level annotation across bacterial species

Cell Cycle Control by the Master Regulator CtrA in Sinorhizobium meliloti

In all domains of life, proper regulation of the cell cycle is critical to coordinate genome replication, segregation and cell division. In some groups of bacteria, e.g. Alphaproteobacteria, tight regulation of the cell cycle is also necessary for the morphological and functional differentiation of cells. Sinorhizobium meliloti is an alphaproteobacterium that forms an economically and ecologically important nitrogen-fixing symbiosis with specific legume hosts. During this symbiosis S. meliloti undergoes an elaborate cellular differentiation within host root cells. The differentiation of S. meliloti results in massive amplification of the genome, cell branching and/or elongation, and loss of reproductive capacity. In Caulobacter crescentus, cellular differentiation is tightly linked to the cell cycle via the activity of the master regulator CtrA, and recent research in S. meliloti suggests that CtrA might also be key to cellular differentiation during symbiosis. However, the regulatory circuit driving cell cycle progression in S. meliloti is not well characterized in both the free-living and symbiotic state. Here, we investigated the regulation and function of CtrA in S. meliloti. We demonstrated that depletion of CtrA cause cell elongation, branching and genome amplification, similar to that observed in nitrogen-fixing bacteroids. We also showed that the cell cycle regulated proteolytic degradation of CtrA is essential in S. meliloti, suggesting a possible mechanism of CtrA depletion in differentiated bacteroids. Using a combination of ChIP-Seq and gene expression microarray analysis we found that although S. meliloti CtrA regulates similar processes as C. crescentus CtrA, it does so through different target genes. For example, our data suggest that CtrA does not control the expression of the Fts complex to control the timing of cell division during the cell cycle, but instead it negatively regulates the septum-inhibiting Min system. Our findings provide valuable insight into how highly conserved genetic networks can evolve, possibly to fit the diverse lifestyles of different bacteria