Full 3D Compact Histogram Segmentation of Color Images

In this study we present a fast unsupervised segmentation method of color images based on the 3D compact histograms. In order to resolve the problems of handling 3D histograms and to palliate the defects of the marginal and bi-marginal approaches, the use of the 3D compact histogram to accomplish classification in the color space RGB proved to be necessary. The interest of this study is based on the use of compact histogram which is a structure with reduced volume of colors without loss of data of the classical histogram and favouring a fast segmentation of color images. Knowing that there is no universal method of segmentation, our aim is to realize an acceptable segmentation that is the most relevant in the sense of a criterion of evaluation of segmentation. The relevance of the choice of peaks is not evident generally and is complexified when the dimension of the space increases; because of the integration of fuzzy neighborhood associated with an algorithm of connected components labeling in our algorithm of classification establishes the first approach of segmentation. The second approach consists in re-quantifying the colors of the histogram before making the classification, this limit the time consuming of segmentation and the effects of over-segmentation; this also the purpose of the first approach. A stage of performance appraisal of segmentation allows bringing to light the relevance of both methods and a comparison of both approaches is so discussed

lHuman cytotoxic T lymphocytes with reduced sensitivity to Fas-induced apoptosis

Effector-memory T cells expressing Fas (Apo-1/CD95) are switched to an apoptotic program by cross-linking with Fas-ligand (FasL). Consequently, tumors that express FasL can induce apoptosis of infiltrating Fas-positive T lymphocytes and subdue any antitumor host immune response. Since Epstein-Barr virus (EBV)-associated tumors such as Hodgkin lymphoma (HL) and nasopharyngeal carcinoma (NPC) express FasL, we determined whether EBV-specific cytotoxic T lymphocytes (EBV-CTLs) could be modified to resist this evasion strategy. We show that long-term down-modulation of Fas can be achieved in EBV-CTLs by transduction with small interfering RNA (siRNA) encoded in a retrovirus. Modified T cells resisted Fas/FasL-mediated apoptosis compared with control cells and showed minimal cleavage of the caspase3 substrate poly(ADP-ribose) polymerase (PARP) protein after Fas engagement. Prolonged Fas stimulation selected a uniformly Fas(low) and FasL resistant population. Removal of responsiveness to this single death signal had no other discernible effects on EBV-CTLs. In particular, it did not lead to their autonomous growth since the modified EBV-CTLs remained polyclonal, and their survival and proliferation retained dependence on antigen-specific stimulation and on the presence of other physiologic growth signals. EBV-CTLs with knocked down Fas should have a selective functional and survival advantage over unmodified EBV-CTLs in the presence of tumors expressing FasL and may be of value for adoptive cellular therapy. (c) 2005 by The American Society of Hematology

Variabilités spatiales et temporelles de la qualité physico-chimique et des invertébrés pélagiques des eaux de la retenue hydroélectrique de Petit Saut (Guyane française).

Le bassin versant du fleuve Sinnamary est situé en Guyane française, au nord du continent sud américain, en zone néo-tropicale. Il s'étend entre 4 et 5°de latitude Nord et entre 52°50' et 53°30' de longitude Ouest. En 1994, la mise en eau du barrage hydroélectrique construit sur le site de Petit Saut occasionne l'ennoiement de 365 km2 de forêt primaire. Le remplissage s'effectue en 18 mois, et la demande en oxygène dissous nécessaire à la dégradation de la matière organique est telle qu'en quelques jours la masse d'eau se stratifie en un épilimnion oxygéné et un hypolimnion anoxique. Représentant quelques centimètres en 1994, l'épilimnion s'épaissit progressivement jusqu'en 1998. Depuis, cette progression s'est nettement ralentie et l'épilimnion oscille autour d'une valeur moyenne de 5 à 6 mètres. Il abrite la plus grande partie du zooplancton pélagique. L'hypolimnion est anoxique et riche en éléments réduits. Le zooplancton s'est rapidement installé avec des rotifères, des cladocères et des copépodes. Des ostracodes et des Chaoboridae y sont désormais associés. La retenue présente une zonation longitudinale, de la tête de la retenue vers la queue, aussi bien en termes de densités que de composition des peuplements. De même, il existe une zonation transversale, notamment marquée par un gradient croissant de la conductivité de l'axe vers les berges. Ces ressources endogènes ainsi que des apports complémentaires (végétaux, invertébrés terrestres, détritus…) sont utilisées par la faune ichtyque qui a su s'adapter au changement du milieu. Le temps de rétention des eaux qui fluctue saisonnièrement en fonction des pluies semble être le facteur prépondérant de variabilité pour la qualité physico-chimique des eaux et les communautés biologiques.The Sinnamary River is located in a neotropical zone, in French Guiana, in the northern part of South America. Its flood basin extends between 4° and 5° N latitude and 52°50' and 53°30' W longitude. The river is found in an equatorial climate, and is influenced by its proximity to the ocean. The temperature varies little, with an average of 25°C for the least hot month (January) and 27°C for the hottest month (October). The humidity is always high and averages more than 90%. The Sinnamary River bed is broad (> 50 m), and runs from south to north for approximately 240 km with a very weak slope (0.0003%). Petit Saut, the site of the hydroelectric dam, is located approximately 60 km from the mouth of the river, with a flood basin area of 5927 km2 and an average flow rate 260 m3 /s.The construction of the hydroelectric dam at Petit Saut in 1994 resulted in the flooding of 365 km2 of primary forest in a neotropical zone (the average depth of the reservoir is 11 m). The dam reservoir was filled over a period of 18 months and the amount of dissolved oxygen necessary for the organic matter to decompose was such that, in a matter of days, the body of water became stratified into an oxygenated epilimnion and an anoxic hypolimnion. Only centimeters thick in 1994, by 1998 the epilimnion had progressively expanded. Since that time it has varied between an average thickness of 5 to 6 m and is home to various biological communities. The hypolimnion is anoxic and rich in reduced compounds (nitrogen and phosphorus minerals, dissolved organic matter, particles, metals and gas). The products of the degradation of the flooded organic matter, which still prevail at the bottom, are gradually relayed towards surface by phenomena of dilution, hydrolysis and oxidation.The river fauna disappeared from the reservoir and was replaced after a few weeks by various pelagic fauna. The zooplanktonic communities, primarily confined to the epilimnion, were quickly settled with rotifera, cladocera and copepoda. Initially dominated by detritivores (Bosminidae) and Cyclopidae from February to May 1994, the settlements diversified with phytophagous zooplankton (Calanidae and Daphniidae) when the phytoplankton developed. This procession was quickly accompanied by Sididae, which has dominated the cladocera since mid-1996 and by ostracoda, which were particularly abundant from 1995 to 1997. Carnivores such as Chaoboridae larvae were also present in Petit Saut reservoir. In contrast to the other zooplankton species, Chaoboridae larvae occupy the entire water column. As a result of great quantities of organic matter available at the time the reservoir was filled, the biomasses were initially large and have gradually decreased with decreasing nutrient concentrations.The reservoir was not homogeneous in terms of zooplankton density, with a longitudinal zonation from the dam towards the upstream tail. In the tail, fauna were identical to those of the river. In the lake zone, phytophagous Calanidae dominated. In the intermediate zone, known as the zone of transition, the zooplankton biomass normalized to the volume of oxygenated water was less important than in the lake zone. Cyclopidae, well represented at the time of the reservoir colonization, dominated the communities in the transition zone. This distribution of zooplankton was likely connected with the dissolved oxygen concentrations, as well as with the quantities of phytoplankton and bacterio-chlorophyll. Similarly, there was a transverse zonation, marked by an increase in conductivity towards the reservoir banks. The density of the communities varied seasonally. The highest biomasses were measured along the central axis at the time of high waters and close to the banks at the time of low waters.The time of water retention, which fluctuates according to the rainy season, seemed to be the factor dominating the physicochemical water quality variability and the biological communities. The rainy season is characterized by the dilution of various elements (e.g., conductivity is reduced). Conversely, during the dry season, the elements concentrate again in the water mass. Nevertheless, the peaks of pelagic invertebrate density were observed during times of high waters, when the hydraulic conditions favour the exchanges between the hypolimnion (anoxic and rich in nutritive elements) and the epilimnion (oxygenated and very low in nutrients).These endogenous resources, as well as complementary contributions (vegetation, invertebrate, terrestrial, refuse), are used by the fish fauna, which adapted to the change in their environment. Predation contributes to the seasonal evolution of the zooplankton. Predation pressure was more important in the dry season than in the rainy season

Performance of a New Method of Multicomponent Images Segmentation in the Presence of Noise

Any undesirable signal limiting to a degree or another the integrity and the intelligibility of a useful signal can be considered as noise. In the general rule, the good performance of a system is assured only if the level of power of the useful signal exceeds by several orders of magnitude that of the noise (signal to noise of a several tens of decibels). However certain elaborate methods of treatment allow working with very low sig- nal to noise ratio in an optimal way any a priori knowledge available on the signal useful to interpret. In this work, we evaluate the robustness of the noise on a new method of multicomponent image segmentation de- veloped recently. Two types of additional noises are considered, which are the Gaussian noise and the uni- form noise, with varying correlation between the different components (or planes) of the image. Quantitative results show the influence of the noise level on the segmentation method

Analysis of the Relevance of Evaluation Criteria for Multicomponent Image Segmentation

Image segmentation is an important stage in many applications such as image, video and computer processing. Gener-ally image interpretation depends on it. The materials and methods used to demonstrate are described. The results are presented and analyzed. Several approaches and algorithms for image segmentation have been developed, but it is dif-ficult to evaluate the efficiency and to make an objective comparison of different segmentation methods. This general problem has been addressed for the evaluation of a segmentation result and the results are available in the literature. In this work, we first presented some criteria of evaluation of segmentation commonly used in image processing with reviews of their models. Then multicomponent synthetic images of known composition are applied to these criteria to explore the operation and evaluate its relevance. The results show that choosing an assessment method depends on the purpose, however the criterion of Zeboudj appears powerful for the evaluation of region segmentations for properly separated classes, on the contrary the criteria of Levine-Nazif and Borsotti are adapted to the methods of classification and permit to build homogeneous regions or classes. The values of the Rosenbeger criterion are generally low and similar, so hard to make a comparison of segmentations with this criterion

Multiplication and preliminary characterization of west and central African pearl millet landraces

West Africa is a center of origin and diversity of pearl millet [Pennisetum glaucum (L.) R. Br.], but this diversity is neither well-understood nor fully accessible to and exploited by NARS breeders and farmers. The objective of the present study was to multiply and initially characterize 281 pearl millet accessions from all over West and Central Africa, with the final aim of promoting a more systematic and targeted exploitation of genetic diversity in adapted germplasm in West African pearl millet improvement programs

Validation and data characteristics of methane and nitrous oxide profiles observed by MIPAS and processed with Version 4.61 algorithm

The ENVISAT validation programme for the atmospheric instruments MIPAS, SCIAMACHY and GOMOS is based on a number of balloon-borne, aircraft, satellite and ground-based correlative measurements. In particular the activities of validation scientists were coordinated by ESA within the ENVISAT Stratospheric Aircraft and Balloon Campaign or ESABC. As part of a series of similar papers on other species [this issue] and in parallel to the contribution of the individual validation teams, the present paper provides a synthesis of comparisons performed between MIPAS CH4 and N2O profiles produced by the current ESA operational software (Instrument Processing Facility version 4.61 or IPF v4.61, full resolution MIPAS data covering the period 9 July 2002 to 26 March 2004) and correlative measurements obtained from balloon and aircraft experiments as well as from satellite sensors or from ground-based instruments. In the middle stratosphere, no significant bias is observed between MIPAS and correlative measurements, and MIPAS is providing a very consistent and global picture of the distribution of CH4 and N2O in this region. In average, the MIPAS CH4 values show a small positive bias in the lower stratosphere of about 5%. A similar situation is observed for N2O with a positive bias of 4%. In the lower stratosphere/upper troposphere (UT/LS) the individual used MIPAS data version 4.61 still exhibits some unphysical oscillations in individual CH4 and N2O profiles caused by the processing algorithm (with almost no regularization). Taking these problems into account, the MIPAS CH4 and N2O profiles are behaving as expected from the internal error estimation of IPF v4.61 and the estimated errors of the correlative measurements

Different prelamin A forms accumulate in human fibroblasts: a study in experimental models and progeria

Lamin A is a component of the nuclear lamina mutated in a group of human inherited disorders known as laminopathies. Among laminopathies, progeroid syndromes and lipodystrophies feature accumulation of prelamin A, the precursor protein which, in normal cells, undergoes a multi-step processing to yield mature lamin A. It is of utmost importance to characterize the prelamin A form accumulated in each laminopathy, since existing evidence shows that drugs acting on protein processing can improve some pathological aspects. We report that two antibodies raised against differently modified prelamin A peptides show a clear specificity to full-length prelamin A or carboxymethylated farnesylated prelamin A, respectively. Using these antibodies, we demonstrated that inhibition of the prelamin A endoprotease ZMPSTE24 mostly elicits accumulation of full-length prelamin A in its farnesylated form, while loss of the prelamin A cleavage site causes accumulation of carboxymethylated prelamin A in progeria cells. These results suggest a major role of ZMPSTE24 in the first prelamin A cleavage step

Management of Myelodysplastic Syndrome Relapsing after Allogeneic Hematopoietic Stem Cell Transplantation: A Study by the French Society of Bone Marrow Transplantation and Cell Therapies

To find out prognostic factors and to investigate different therapeutic approaches, we report on 147 consecutive patients who relapsed after allogeneic hematopoietic stem cell transplantation (allo-HSCT) for myelodysplastic syndrome (MDS). Sixty-two patients underwent immunotherapy (IT group, second allo-HSCT or donor lymphocyte infusion), 39 received cytoreductive treatment alone (CRT group) and 46 were managed with palliative/supportive cares (PSC group). Two-year rates of overall survival (OS) were 32%, 6%, and 2% in the IT, CRT, and PSC groups, respectively (P < .001). In multivariate analysis, 4 factors adversely influenced 2-year rates of OS: history of acute graft-versus-host disease (hazard ratio [HR], 1.83; 95% confidence interval [CI], 1.26 to 2.67; P ¼ .002), relapse within 6 months (HR, 2.69; 95% CI, .82 to 3.98; P < .001), progression to acute myeloid leukemia (HR, 2.59; 95% CI, 1.75 to 3.83; P < .001), and platelet count < 50 G/L at relapse (HR, 1.68; 95% CI, 1.15 to 2.44; P ¼.007). A prognostic score based on those factors discriminated 2 risk groups with median OSs of 13.2 versus 2.4 months, respectively (P < .001). When propensity score, prognostic score, and treatment strategy were included in Cox model, immunotherapy was found to be an independent factor that favorably impacts OS (HR, .40; 95% CI, .26 to .63; P < .001). In conclusion, immunotherapy should be considered when possible for MDS patients relapsing after allo-HSCT