Considerations on Field Methodology for Macrofungi Studies in Fragmented Forests of Mediterranean Agricultural Landscapes

The methodology used for the determination of macrofungal diversity in Mediterranean areas differs in the time of sampling and the number of years displayed, making it difficult to compare results. Furthermore, the results could be refuted because the studies are being conducted over an insufficient number of years or without considering the variation of the meteorological conditions from one year to the next and its effects on fruiting time, which might not fit the sampling. In order to optimize field work on fungal fruiting in Mediterranean environments dominated by holm oak (Quercus ilex L.), a weekly field analysis of macrofungal diversity from February 2009 to June 2013 was carried out in a Mediterranean holm oak forest in the middle-west of the Iberian Peninsula. The results revealed that fruiting bodies appeared throughout the year and that there was a delay in autumn fruiting, overlapping with spring. All this seems to indicate that weekly collection throughout the year and for a period of two years could be sufficient to estimate the macrofungal biodiversity of this ecosystem. © 2022 by the authors. Licensee MDPI, Basel, Switzerland

Seroprevalence of SARS-CoV-2 Antibodies and Factors Associated with Seropositivity at the University of Salamanca: The DIANCUSAL Study

© 2021 by the authors[Background]: Systematic screening for antibodies against SARS-CoV-2 is a crucial tool for surveillance of the COVID-19 pandemic. The University of Salamanca (USAL) in Spain designed a project called “DIANCUSAL” (Diagnosis of New Coronavirus, COVID-19, in University of Salamanca) to measure antibodies against SARS-CoV-2 among its ~34,000 students and academic staff, as the influence of the university community in the spread of the SARS-CoV-2 pandemic in the city of Salamanca and neighboring towns hosting USAL campuses could be substantial.[Objective]: The aim of this study was to estimate the prevalence of SARS-CoV-2 antibodies among USAL students, professors and staff and to evaluate the demographic, academic, clinical and lifestyle and behavioral factors related to seropositivity.[Methodology]: The DIANCUSAL study is an ongoing university population-based cross-sectional study, with the work described herein conducted from July–October 2020. All USAL students, professors and staff were invited to complete an anonymized questionnaire. Seroprevalence of anti-SARS-CoV-2 antibodies was detected and quantified by using chemiluminescent assays for IgG and IgM. Principal findings: A total of 8197 (24.71%) participants were included. The mean age was 31.4 (14.5 SD) years, and 66.0% of the participants were female. The seroprevalence was 8.25% overall and was highest for students from the education campus (12.5%) and professors from the biomedical campus (12.6%), with significant differences among faculties (p = 0.006). Based on the questionnaire, loss of smell and fever were the symptoms most strongly associated with seropositivity, and 22.6% of seropositive participants were asymptomatic. Social distancing was the most effective hygiene measure (p = 0.0007). There were significant differences in seroprevalence between participants with and without household exposure to SARS-CoV-2 (p = 0.0000), but not between students who lived in private homes and those who lived in dormitories. IgG antibodies decreased over time in the participants with confirmed self-reported COVID-19 diagnoses.[Conclusions]: The analysis revealed an overall 8.25% seroprevalence at the end of October 2020, with a higher seroprevalence in students than in staff. Thus, there is no need for tailored measures for the USAL community as the official average seroprevalence in the area was similar (7.8% at 22 June and 12.4 at 15 November of 2020). Instead, USAL members should comply with public health measures.The DIANCUSAL (Diagnosis of New Coronavirus, COVID-19, in University of Salamanca) study was funded by a grant from the University of Salamanca (USAL)

Population genomics provide insights into the global genetic structure of Colletotrichum graminicola, the causal agent of maize anthracnose.

Abstract: Understanding the genetic diversity and mechanisms underlying genetic variation in pathogen populations is crucial to the development of effective control strategies. We investigated the genetic diversity and reproductive biology of Colletotrichum graminicola isolates which infect maize by sequencing the genomes of 108 isolates collected from 14 countries using restriction site-associated DNA sequencing (RAD-seq) and whole-genome sequencing (WGS). Clustering analyses based on single-nucleotide polymorphisms revealed three genetic groups delimited by continental origin, compatible with short-dispersal of the pathogen and geographic subdivision. Intra- and intercontinental migration was observed between Europe and South America, likely associated with the movement of contaminated germplasm. Low clonality, evidence of genetic recombination, and high phenotypic diversity were detected. We show evidence that, although it is rare (possibly due to losses of sexual reproduction- and meiosis-associated genes) C. graminicola can undergo sexual recombination. Our results support the hypotheses that intra- and intercontinental pathogen migration and genetic recombination have great impacts on the C. graminicola population structure. Importance: Plant pathogens cause significant reductions in yield and crop quality and cause enormous economic losses worldwide. Reducing these losses provides an obvious strategy to increase food production without further degrading natural ecosystems; however, this requires knowledge of the biology and evolution of the pathogens in agroecosystems. We employed a population genomics approach to investigate the genetic diversity and reproductive biology of the maize anthracnose pathogen (Colletotrichum graminicola) in 14 countries. We found that the populations are correlated with their geographical origin and that migration between countries is ongoing, possibly caused by the movement of infected plant material. This result has direct implications for disease management because migration can cause the movement of more virulent and/or fungicide-resistant genotypes. We conclude that genetic recombination is frequent (in contrast to the traditional view of C. graminicola being mainly asexual), which strongly impacts control measures and breeding programs aimed at controlling this disease.On-line first

Migration and genetic recombination shape the global population structure of Colletotrichum graminicola, the causal agent of maize anthracnose.

Maize anthracnose, caused by the ascomycete fungus Colletotrichum graminicola, is an important crop disease worldwide. Understanding the genetic diversity and mechanisms underlying genetic variation in pathogen populations is crucial to the development of effective control strategies. The genus Colletotrichum is largely recognized as asexual, but several species have been reported to have a sexual cycle. We employed a population genomics approach to investigate the genetic diversity and reproductive biology of C. graminicola isolates infecting maize. We sequenced 108 isolates of C. graminicola collected in 14 countries using restriction site-associated DNA sequencing (RAD-Seq) and whole-genome sequencing (WGS). Clustering analyses based on single-nucleotide polymorphisms showed populational differentiation at a global scale, with three genetic groups delimited by continental origin, corresponding to the isolates from South America, Europe, and North America, compatible with short-dispersal of the pathogen, and geographic subdivision. Intra and inter-continental migration was predicted between Europe and South America, likely associated with the movement of contaminated germplasm. Low clonality and evidence of genetic recombination were detected from the analysis of linkage disequilibrium and the pairwise homoplasy index (PHI) test for clonality. Although the sexual state of C. graminicola has only been reported in lab conditions, we showed strong evidence that genetic recombination have a great impact on C. graminicola population structure, in contrast to the traditional view of C. graminicola being mainly clonal

Los métodos Biplot: evolución y aplicaciones

Entre los métodos de análisis multivariante de datos, los Biplot han sido fuente de continuas con-tribuciones a la ciencia desde su origen en 1971. Su objetivo general es la aproximación de una matriz de datos, de tal forma que permita su descripción o modelización a través de mapas geo-métricos construidos como proyecciones de nubes de puntos filas y columnas sobre subespacios de ajuste óptimo. Las múltiples contribuciones realizadas en las últimas décadas, nos han moti-vado a la realización del presente ensayo, donde se recogen en forma bastante completa las diferentes tendencias y se destacan las principales contribuciones. Esperamos que esta revisión pueda resultar de utilidad a investigadores interesados en el tema, ya que les permite seleccio-nar el método Biplot más adecuado para investigaciones posteriores, así como también conocer las líneas de investigación actuales que le sirvan como base para otras contribuciones en cual-quier campo de las ciencias, naturales y sociales

LOS MÉTODOS BIPLOT: EVOLUCIÓN Y APLICACIONES

Entre los métodos de análisis multivariante de datos, los Biplot han sido fuente de continuas contribuciones a la ciencia desde su origen en 1971. Su objetivo general es la aproximación de una matriz de datos, de tal forma que permita su descripción o modelización a través de mapas geométricos construidos como proyecciones de nubes de puntos filas y columnas sobre subespacios de ajuste óptimo. Las múltiples contribuciones realizadas en las últimas décadas, nos han motivado a la realización del presente ensayo, donde se recogen en forma bastante completa las diferentes tendencias y se destacan las principales contribuciones. Esperamos que esta revisión pueda resultar de utilidad a investigadores interesados en el tema, ya que les permite seleccionar el método Biplot más adecuado para investigaciones posteriores, así como también conocer las líneas de investigación actuales que le sirvan como base para otras contribuciones en cualquier campo de las ciencias, naturales y sociales

MicroRNA (miR)-203 and miR-205 expression patterns identify subgroups of prognosis in cutaneous squamous cell carcinoma

[Background]: Cutaneous squamous cell carcinoma (CSCC) is the second most widespread cancer in humans and its incidence is rising. These tumours can evolve as diseases of poor prognosis, and therefore it is important to identify new markers to better predict its clinical evolution. [Objectives]: We aimed to identify the expression pattern of microRNAs (miRNAs or miRs) at different stages of skin cancer progression in a panel of murine skin cancer cell lines. Owing to the increasing importance of miRNAs in the pathogenesis of cancer, we considered the possibility that miRNAs could help to define the prognosis of CSCC and aimed to evaluate the potential use of miR-203 and miR-205 as biomarkers of prognosis in human tumours. [Methods]: Seventy-nine human primary CSCCs were collected at the University Hospital of Salamanca in Spain. We identified differential miRNA expression patterns at different stages of CSCC progression in a well-established panel of murine skin cancer cell lines, and then selected miR-205 and miR-203 to evaluate their association with the clinical prognosis and evolution of human CSCC. [Results]: miR-205 was expressed in tumours with pathological features recognized as indicators of poor prognosis such as desmoplasia, perineural invasion and infiltrative growth pattern. miR-205 was mainly expressed in undifferentiated areas and in the invasion front, and was associated with both local recurrence and the development of general clinical events of poor evolution. miR-205 expression was an independent variable selected to predict events of poor clinical evolution using the multinomial logistic regression model described in this study. In contrast, miR-203 was mainly expressed in tumours exhibiting the characteristics associated with a good prognosis, was mainly present in well-differentiated zones, and rarely expressed in the invasion front. Therefore, the expression and associations of miR-205 and miR-203 were mostly mutually exclusive. Finally, using a logistic biplot we identified three clusters of patients with differential prognosis based on miR-203 and miR-205 expression, and pathological tumour features. [Conclusions]: miR-205 and miR-203 tended to exhibit mutually exclusive expression patterns in human CSCC. This work highlights the utility of miR-205 and miR-203 as prognostic markers in CSCC.J.P.-L. was partially supported by FEDER and MICINN (PLE2009-119, SAF2014-56989-R), Instituto de Salud Carlos III (PI07/0057, PI10/00328, PIE14/00066), Junta de Castilla y Leon (SA078A09, CSI034U13, CSI001U16), the ‘Eugenio Rodriguez Pascual’, the ‘Fundacion Inbiomed’ (Instituto Oncologico Obra Social de la Caja Guipozcoa-San Sebastian, Kutxa), IBSAL (IBY15/00003) and the ‘Fundacion Sandra Ibarra de Solidaridad frente al Cancer’. C.R.-C. is funded by Q3718001E (2009–2010) y GRS 612/A/11 (2011–2012) and the ‘Fundacion Eugenio Rodriguez Pascual’. A.C.-M. was supported by FIS (PI07/0057) and MICINN (PLE2009-119). J.H.M. was supported by the National Institutes of Health, a National Cancer Institute grant (R01 CA116481) and the Low-Dose Scientific Focus Area, Office of Biological & Environmental Research, U.S. Department of Energy (DE-AC02-05CH11231). J.C. was partially supported by Gerencia Regional de Salud (Junta de Castilla y Leon), GRS 1342 / A / 16.Peer Reviewe

Distribution of subsets of blood monocytic cells throughout life

TiMaScan Study Group.Peer reviewe