Continental scale structuring of forest and soil diversity via functional traits.

Trait-based ecology claims to offer a mechanistic approach for explaining the drivers that structure biological diversity and predicting the responses of species, trophic interactions and ecosystems to environmental change. However, support for this claim is lacking across broad taxonomic groups. A framework for defining ecosystem processes in terms of the functional traits of their constituent taxa across large spatial scales is needed. Here, we provide a comprehensive assessment of the linkages between climate, plant traits and soil microbial traits at many sites spanning a broad latitudinal temperature gradient from tropical to subalpine forests. Our results show that temperature drives coordinated shifts in most plant and soil bacterial traits but these relationships are not observed for most fungal traits. Shifts in plant traits are mechanistically associated with soil bacterial functional traits related to carbon (C), nitrogen (N) and phosphorus (P) cycling, indicating that microbial processes are tightly linked to variation in plant traits that influence rates of ecosystem decomposition and nutrient cycling. Our results are consistent with hypotheses that diversity gradients reflect shifts in phenotypic optima signifying local temperature adaptation mediated by soil nutrient availability and metabolism. They underscore the importance of temperature in structuring the functional diversity of plants and soil microbes in forest ecosystems and how this is coupled to biogeochemical processes via functional traits

Biogeographic patterns of soil diazotrophic communities across six forests in North America.

Soil diazotrophs play important roles in ecosystem functioning by converting atmospheric N2 into biologically available ammonium. However, the diversity and distribution of soil diazotrophic communities in different forests and whether they follow biogeographic patterns similar to macroorganisms still remain unclear. By sequencing nifH gene amplicons, we surveyed the diversity, structure and biogeographic patterns of soil diazotrophic communities across six North American forests (126 nested samples). Our results showed that each forest harboured markedly different soil diazotrophic communities and that these communities followed traditional biogeographic patterns similar to plant and animal communities, including the taxa-area relationship (TAR) and latitudinal diversity gradient. Significantly higher community diversity and lower microbial spatial turnover rates (i.e. z-values) were found for rainforests (~0.06) than temperate forests (~0.1). The gradient pattern of TARs and community diversity was strongly correlated (r(2)  > 0.5) with latitude, annual mean temperature, plant species richness and precipitation, and weakly correlated (r(2)  < 0.25) with pH and soil moisture. This study suggests that even microbial subcommunities (e.g. soil diazotrophs) follow general biogeographic patterns (e.g. TAR, latitudinal diversity gradient), and indicates that the metabolic theory of ecology and habitat heterogeneity may be the major underlying ecological mechanisms shaping the biogeographic patterns of soil diazotrophic communities

Intraspecific Trait Variation and Phenotypic Plasticity Mediate Alpine Plant Species Response to Climate Change

In a rapidly changing climate, alpine plants may persist by adapting to new conditions. However, the rate at which the climate is changing might exceed the rate of adaptation through evolutionary processes in long-lived plants. Persistence may depend on phenotypic plasticity in morphology and physiology. Here we investigated patterns of leaf trait variation including leaf area, leaf thickness, specific leaf area, leaf dry matter content, leaf nutrients (C, N, P) and isotopes (δ13C and δ15N) across an elevation gradient on Gongga Mountain, Sichuan Province, China. We quantified inter- and intra-specific trait variation and the plasticity in leaf traits of selected species to experimental warming and cooling by using a reciprocal transplantation approach. We found substantial phenotypic plasticity in most functional traits where δ15N, leaf area, and leaf P showed greatest plasticity. These traits did not correspond with traits with the largest amount of intraspecific variation. Plasticity in leaf functional traits tended to enable plant populations to shift their trait values toward the mean values of a transplanted plants’ destination community, but only if that population started with very different trait values. These results suggest that leaf trait plasticity is an important mechanism for enabling plants to persist within communities and to better tolerate changing environmental conditions under climate change

Variation of Functional Traits Across Space and Time: Assessing the Roles of Succession and Temperature on Plant and Microbial Functional Traits to Understand Biodiversity Gradients

Traditionally, the study of biodiversity has focused on quantifying patterns of species diversity, or species richness, by simply counting the number of species across environmental gradients. This approach has been fundamental to ecological investigations and thinking with regards to identifying patterns of biodiversity. Although species diversity is the most commonly used dimension of biodiversity, species diversity alone does not provide a mechanistic understanding of biodiversity gradients. By also quantifying the genetic and phylogenetic diversity of a population, community or ecosystem, ecologists can become more informed on the relationships organisms have with one another, as well as their potential to adapt to changes in their environment. While each of these approaches provides methods for characterizing biodiversity, they do not offer direct insight into what species do, how they function, or how they will respond to changes in their environment. Functional, or trait-based ecology, provides an informative alternative to species-centric approaches that seeks to understand patterns of biodiversity in terms of functional traits. Functional traits capture fundamental tradeoffs in life history strategies that can be used to determine species ecological roles and can be used to scale from organisms to ecosystems to ask broad ecological questions. The overarching goal of my dissertation is to add additional links to trait-based ecology by identifying potential sources of trait variation across different spatial and temporal gradients between varying levels of biological organization. By assessing variation across spatial-temporal scales, I tested two prominent assumptions of trait-based ecology. First, I tested the trait-environment assumption wherein traits affect ecosystem processes. Therefore, there should be a predictable relationship between traits, their environment, and ecosystem function across large ecological gradients and between broad taxonomic groups. Second, I tested the assumption that interspecific trait variation exceeds intraspecific trait variation; thus, the species mean trait value captures much of the variation for a given trait. My study systems include the latitudinal diversity gradient of North America, forests of varying successional age in the tropical dry forests of Costa Rica, and a subalpine meadow of Colorado. First, we collected leaf trait data and soil microbial data at six sites across the latitudinal diversity gradient to test a central hypothesis of trait-based ecology, primarily that shifts in plant traits associated with decomposition and nutrient availability ramify to influence microbial functioning. We found that changes in plant traits not only reflect nutrient limitation across broad ecological gradients, but also have important regional effects on biogeochemical processes, microclimates, and energy fluxes that influence microbial diversity. Furthermore, changes in plant function correspond to changes in bacterial functional traits related to carbon, nitrogen, and phosphorus cycling, although only fungal functional traits related to nitrogen cycling change across the gradient. Our results represent one of the first comparisons of functional diversity within and across bacterial, fungal, and plant communities across a latitudinal gradient. Next, we collected leaf functional trait and abiotic data across a 110-year chronosequence within a tropical dry forest in Costa Rica. We focused on six leaf functional traits for woody plants within 14 plots that have varying times since disturbance in the tropical dry forests of Guanacaste, Costa Rica. When we compare species composition and community function, we find that older tropical dry forest communities differ significantly from younger forests in species composition, above ground biomass, and functional traits. Species in younger forests have traits better adapted to hotter temperatures and increased drought. For example, young forests are characterized by thicker leaves with higher water use efficiency. In contrast, older forests have thinner broader leaves more susceptible to desiccation. Interestingly, in contrast to expectations, variation in these functional traits does not generally change through succession. This means that the different species within each community are converging on similar functional strategies. Our results also suggest that regenerating tropical dry forests are resilient and can be restored within a human lifetime. Finally, we evaluated patterns of trait variation within and between three years to understand the widely-ignored source of temporal variation associated with seasonality and test the assumption that interspecific trait variation exceeds intraspecific variation and the species means account for the overall variation of a trait. To do this, we collected leaf data from eight species at a local site in Colorado throughout the growing season, over three years, as well as extracted data from a global database and made comparisons to assess sources trait variation. We found that, although the timing of collection influences one’s ability to capture fine-scale processes occurring on short time scales, collecting data locally throughout the growing season and across multiple years does not significantly influence species ranking. However, species ranking is not conserved for comparisons between local and global databases. This suggests that extra care should be taken when applying global data for species-specific studies and that ‘snap-shot’ sampling designs may over- or underestimate community trait distributions, reducing predictability. Overall, this body of work extends beyond understanding patterns of species diversity through the inclusion of species function. It contributes to our understanding of variation in biodiversity across broad ecological gradients and between diverse taxonomic groups, how communities assemble via functional traits, and the importance of temporal variation on functional traits for detecting fine-scale patterns.Release after 08-Aug-201

Data from: Re-growing a tropical dry forest: functional plant trait composition and community assembly during succession

A longstanding goal of ecology and conservation biology is to understand the environmental and biological controls of forest succession. However, the patterns and mechanisms that guide successional trajectories, especially within tropical forests, remain unclear. We collected leaf functional trait and abiotic data across a 110-year chronosequence within a tropical dry forest in Costa Rica. Focusing on six key leaf functional traits related to resource acquisition and competition, along with measures of forest stand structure, we propose a mechanistic framework to link species composition, community trait distributions, and forest structure. We quantified the community-weighted trait distributions for specific leaf area, leaf dry matter concentration, leaf phosphorus concentration, leaf carbon to nitrogen ratio, and leaf stable isotopic carbon and nitrogen. We assessed several prominent hypotheses for how these functional measures shift in response to changing environmental variables (soil water content, bulk density and pH) across the chronosequence. Increasingly, older forests differed significantly from younger forests in species composition, above ground biomass and shifted trait distributions. Early stages of succession were uniformly characterized by lower values of community-weighted mean specific leaf area, leaf stable nitrogen isotope, and leaf phosphorus concentration. Leaf dry matter concentration and leaf carbon to nitrogen ratio were lower during earlier stages of succession, and each trait reached an optimum during intermediate stages of succession. The leaf carbon isotope ratio was the only trait to decrease linearly with increasing stand age indicating reduced water use efficiency in older forests. However, in contrast to expectations, community-weighted trait variances did not generally change through succession, and when compared to null expectations were lower than expected. The observed directional shift in community-weighted mean trait values is consistent with the ‘productivity filtering’ hypothesis where a directional shift in water and light availability shifts physiological strategies from ‘slow’ to ‘fast’. In contrast to expectations arising from niche based ecology, none of the community trait distributions were over-dispersed. Instead, patterns of trait dispersion are consistent with the abiotic filtering and/or competitive hierarchy hypotheses

Genetic assessments and parentage analysis of captive Bolson tortoises (Gopherus flavomarginatus) inform their "rewilding" in New Mexico.

The Bolson tortoise (Gopherus flavomarginatus) is the first species of extirpated megafauna to be repatriated into the United States. In September 2006, 30 individuals were translocated from Arizona to New Mexico with the long-term objective of restoring wild populations via captive propagation. We evaluated mtDNA sequences and allelic diversity among 11 microsatellite loci from the captive population and archived samples collected from wild individuals in Durango, Mexico (n = 28). Both populations exhibited very low genetic diversity and the captive population captured roughly 97.5% of the total wild diversity, making it a promising founder population. Genetic screening of other captive animals (n = 26) potentially suitable for reintroduction uncovered multiple hybrid G. flavomarginatus×G. polyphemus, which were ineligible for repatriation; only three of these individuals were verified as purebred G. flavomarginatus. We used these genetic data to inform mate pairing, reduce the potential for inbreeding and to monitor the maintenance of genetic diversity in the captive population. After six years of successful propagation, we analyzed the parentage of 241 hatchlings to assess the maintenance of genetic diversity. Not all adults contributed equally to successive generations. Most yearly cohorts of hatchlings failed to capture the diversity of the parental population. However, overlapping generations of tortoises helped to alleviate genetic loss because the entire six-year cohort of hatchlings contained the allelic diversity of the parental population. Polyandry and sperm storage occurred in the captives and future management strategies must consider such events

FEBuzzardCWVCalculation.R

R-script for calculating the community weighted variance (CWV) for each plot