From First Lyapunov Coefficients to Maximal Canards

Hopf bifurcations in fast-slow systems of ordinary differential equations can be associated with surprising rapid growth of periodic orbits. This process is referred to as canard explosion. The key step in locating a canard explosion is to calculate the location of a special trajectory, called a maximal canard, in parameter space. A first-order asymptotic expansion of this location was found by Krupa and Szmolyan in the framework of a "canard point"-normal-form for systems with one fast and one slow variable. We show how to compute the coefficient in this expansion using the first Lyapunov coefficient at the Hopf bifurcation thereby avoiding use of this normal form. Our results connect the theory of canard explosions with existing numerical software, enabling easier calculations of where canard explosions occur.Comment: preprint version - for final version see journal referenc

Stochastic Processes Crossing from Ballistic to Fractional Diffusion with Memory: Exact Results

We address the now classical problem of a diffusion process that crosses over from a ballistic behavior at short times to a fractional diffusion (sub- or super-diffusion) at longer times. Using the standard non-Markovian diffusion equation we demonstrate how to choose the memory kernel to exactly respect the two different asymptotics of the diffusion process. Having done so we solve for the probability distribution function (pdf) as a continuous function which evolves inside a ballistically expanding domain. This general solution agrees for long times with the pdf obtained within the continuous random walk approach but it is much superior to this solution at shorter times where the effect of the ballistic regime is crucial

Mentoring Relationships in the Field of Sexually Transmitted Infections: Experiences, Observations, and Recommendations

In this paper, we describe: (a) our experiences and accomplishments in the American Academy of Health Behavior (AAHB) Research Scholars Mentoring Program; (b) the current state of mentorship in the field of sexually transmitted infections (STIs); (c) the fundamental factors of successful mentoring, including alignment with personal values, transparency, intentionality, respect, equity, empathy, and emotional intelligence. The authors have reviewed their experiences in mentoring and receiving mentorship and have collectively identified concepts they valued in mentoring relationships, particularly those that are useful for women in science. The authors provide recommendations and considerations for future mentoring relationships

Transition between Two Oscillation Modes

A model for the symmetric coupling of two self-oscillators is presented. The nonlinearities cause the system to vibrate in two modes of different symmetries. The transition between these two regimes of oscillation can occur by two different scenarios. This might model the release of vortices behind circular cylinders with a possible transition from a symmetric to an antisymmetric Benard-von Karman vortex street.Comment: 12 pages, 0 figure

Online automatic tuning and control for fed-batch cultivation

Performance of controllers applied in biotechnological production is often below expectation. Online automatic tuning has the capability to improve control performance by adjusting control parameters. This work presents automatic tuning approaches for model reference specific growth rate control during fed-batch cultivation. The approaches are direct methods that use the error between observed specific growth rate and its set point; systematic perturbations of the cultivation are not necessary. Two automatic tuning methods proved to be efficient, in which the adaptation rate is based on a combination of the error, squared error and integral error. These methods are relatively simple and robust against disturbances, parameter uncertainties, and initialization errors. Application of the specific growth rate controller yields a stable system. The controller and automatic tuning methods are qualified by simulations and laboratory experiments with Bordetella pertussis

The exact evaluation of the corner-to-corner resistance of an M x N resistor network: Asymptotic expansion

We study the corner-to-corner resistance of an M x N resistor network with resistors r and s in the two spatial directions, and obtain an asymptotic expansion of its exact expression for large M and N. For M = N, r = s =1, our result is R_{NxN} = (4/pi) log N + 0.077318 + 0.266070/N^2 - 0.534779/N^4 + O(1/N^6).Comment: 12 pages, re-arranged section

Distinct RNA profiles in subpopulations of extracellular vesicles: apoptotic bodies, microvesicles and exosomes

Introduction: In recent years, there has been an exponential increase in the number of studies aiming to understand the biology of exosomes, as well as other extracellular vesicles. However, classification of membrane vesicles and the appropriate protocols for their isolation are still under intense discussion and investigation. When isolating vesicles, it is crucial to use systems that are able to separate them, to avoid cross-contamination. Method: EVs released from three different kinds of cell lines: HMC-1, TF-1 and BV-2 were isolated using two centrifugation-based protocols. In protocol 1, apoptotic bodies were collected at 2,000×g, followed by filtering the supernatant through 0.8 µm pores and pelleting of microvesicles at 12,200×g. In protocol 2, apoptotic bodies and microvesicles were collected together at 16,500×g, followed by filtering of the supernatant through 0.2 µm pores and pelleting of exosomes at 120,000×g. Extracellular vesicles were analyzed by transmission electron microscopy, flow cytometry and the RNA profiles were investigated using a Bioanalyzer®. Results: RNA profiles showed that ribosomal RNA was primary detectable in apoptotic bodies and smaller RNAs without prominent ribosomal RNA peaks in exosomes. In contrast, microvesicles contained little or no RNA except for microvesicles collected from TF-1 cell cultures. The different vesicle pellets showed highly different distribution of size, shape and electron density with typical apoptotic body, microvesicle and exosome characteristics when analyzed by transmission electron microscopy. Flow cytometry revealed the presence of CD63 and CD81 in all vesicles investigated, as well as CD9 except in the TF-1-derived vesicles, as these cells do not express CD9. Conclusions: Our results demonstrate that centrifugation-based protocols are simple and fast systems to distinguish subpopulations of extracellular vesicles. Different vesicles show different RNA profiles and morphological characteristics, but they are indistinguishable using CD63-coated beads for flow cytometry analysis

Theory of resistor networks: The two-point resistance

The resistance between arbitrary two nodes in a resistor network is obtained in terms of the eigenvalues and eigenfunctions of the Laplacian matrix associated with the network. Explicit formulas for two-point resistances are deduced for regular lattices in one, two, and three dimensions under various boundary conditions including that of a Moebius strip and a Klein bottle. The emphasis is on lattices of finite sizes. We also deduce summation and product identities which can be used to analyze large-size expansions of two-and-higher dimensional lattices.Comment: 30 pages, 5 figures now included; typos in Example 1 correcte