Effect of organically and conventionally produced diets on jejunal gene expression in chickens

Using a nutrigenomics approach we studied the response of second-generation chickens at a transcriptional level to organically grown feed ingredients compared with conventionally grown feed ingredients. Both diets consisted of the same amounts of ingredients, the only difference was the production method. Gene expression was analysed in jejuni using whole genome chicken cDNA arrays. After analysis, forty-nine genes were found to be differentially regulated between chickens fed on the different diets, independent of their genetic background. Of these forty-nine genes, seven genes were involved in cholesterol biosynthesis. Genes involved in cholesterol biosynthesis were higher expressed in jejuni from organically fed birds. Other genes found to be regulated were involved in immunological processes, such as B-G protein (part of chicken major histocompatibility complex), chemokine ah221, and the immunoglobulin heavy chain. Using quantitative PCR the effect of genetic background on the differential expression of genes was studied. Differences in gene expression existed between animals fed different diets as well as between different chicken lines. This indicated that diet and genetic background influence the transcriptional response of the jejunum. This is the first time that significant differences in gene expression were shown between animals on diets with organically or conventionally produced ingredient

Quantitative relationships between benthic diatom assemblages and water chemistry in Macquarie Island lakes and their potential for reconstructing past environmental changes

This study is the first published survey of diatom-environment relationships Oil sub-Antarctic Macquarie Island. Fifty-eight sites in 50 coastal and inland lakes were sampled for benthic diatoms and water chemistry. 208 diatom species from 34 genera were identified. Multivariate analyses indicated that the lakes were distributed along nutrient and conductivity gradients. Conductivity, pH, phosphate (SRP), silicate and temperature all explained independent portions of the variance in the diatom data. Transfer functions provide a quantitative basis for palaeolimnological studies of past climate change and human impacts, and can be used to establish baseline conditions for assessing the impacts of recent climate change and the introduction of non-native plants and animals. Statistically robust diatom transfer functions for conductivity, phosphate and silicate were developed, while pH and temperature transfer functions performed less well. The lower predictive abilities of the pH and temperature transfer functions probably reflect the broad pH tolerance range of diatoms on Macquarie Island and uneven distribution of lakes along the temperature gradient. This study contributes to understanding the current ecological distribution of Macquarie Island diatoms and provides transfer functions that will be applied in studies of diatoms in lake sediment cores to quantitatively reconstruct past environmental changes

Differences in neurocognitive aspects of dyslexia in Dutch and immigrant 6-7- and 8-9-years old children

Detecting dyslexia in immigrant children can be jeopardized because of assessment bias, as a consequence of a limited word lexicon or differences in language development of these children. This is in contrast with the view of the universal neurocognitive basis for dyslexia. In this research, differences in screening children at risk for dyslexia with the Dyslexia Screening Test (DST) were studied in third and fifth graders of primary school of Dutch (mainstream) and immigrant descent. Mean group differences were found on a few subtests (Naming Letters, Semantic Fluency, Backward Digit Span and Verbal Fluency), probably as a consequence of bias because of the linguistic character of these subtests. The raw scores of word lexicon increased in the Dutch and immigrant group. The association of having a dyslexia diagnosis on DST scores was comparable for Dutch and immigrant children. Differences in the DST scores between non-dyslexic and dyslexic children were found between the third and fifth grade, with a stronger effect of having a dyslexia diagnosis in the fifth grade than the third grade, for Dutch as well as immigrant children. Screening of dyslexia seems easier in the fifth grade than in the third grade, dyslexic children show a slower reading development than their non-dyslexic peers, irrespective of their cultural background. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40064-015-0874-1) contains supplementary material, which is available to authorized users

Cyclotella paleo-ocellata, a new centric diatom (Bacillariophyta) from Lake Kinneret (Israel)

© Czech Phycological Society (2015). Large, subfossil populations of an unknown centric, planktonic diatom were observed in a lake sediment core from Lake Kinneret (Israel), which is here described as Cyclotella paleo–ocellata sp. nov. The new taxon, which belongs to the Cyclotella ocellata species complex, is described and separated from other similar taxa (e.g., Cyclotella ocellata, Cyclotella kuetzingiana, Cyclotella polymorpha, Cyclotella paraocellata) based on a combination of the following morphological characters: valve diameter, number of orbiculi depressi (circular depressions), number of striae/10 μm, stria length, number and position of rimoportulae and the number of central and marginal fultoportulae. Cyclotella paleo–ocellata can be distinguished mainly by two prominent characteristics: (1) the number and the arrangement of the orbiculi depressi (4–8) which increase with the valve diameter and (2) the marginal fultoportulae, situated on each, every second or third costa. Since Cyclotella paleo–ocellata is at present only known from the subfossil bottom sediments of Lake Kinneret, its ecological preferences are inferred simply from the associated diatom flora

Broadband hyperspectral imaging for breast tumor detection using spectral and spatial information

Complete tumor removal during breast-conserving surgery remains challenging due to the lack of optimal intraoperative margin assessment techniques. Here, we use hyperspectral imaging for tumor detection in fresh breast tissue. We evaluated different wavelength ranges and two classification algorithms; a pixel-wise classification algorithm and a convolutional neural network that combines spectral and spatial information. The highest classification performance was obtained using the full wavelength range (450-1650nm). Adding spatial information mainly improved the differentiation of tissue classes within the malignant and healthy classes. High sensitivity and specificity were accomplished, which offers potential for hyperspectral imaging as a margin assessment technique to improve surgical outcome. (C) 2019 Optical Society of America under the terms of the OSA Open Access Publishing Agreemen

Method for coregistration of optical measurements of breast tissue with histopathology : the importance of accounting for tissue deformations

For the validation of optical diagnostic technologies, experimental results need to be benchmarked against the gold standard. Currently, the gold standard for tissue characterization is assessment of hematoxylin and eosin (H&E)-stained sections by a pathologist. When processing tissue into H&E sections, the shape of the tissue deforms with respect to the initial shape when it was optically measured. We demonstrate the importance of accounting for these tissue deformations when correlating optical measurement with routinely acquired histopathology. We propose a method to register the tissue in the H&E sections to the optical measurements, which corrects for these tissue deformations. We compare the registered H&E sections to H&E sections that were registered with an algorithm that does not account for tissue deformations by evaluating both the shape and the composition of the tissue and using microcomputer tomography data as an independent measure. The proposed method, which did account for tissue deformations, was more accurate than the method that did not account for tissue deformations. These results emphasize the need for a registration method that accounts for tissue deformations, such as the method presented in this study, which can aid in validating optical techniques for clinical use. (C) The Authors. Published by SPIE under a Creative Commons Attribution 4.0 Unported License