27 research outputs found

    Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.)

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    Background Starch is the principle constituent of potato tubers and is of considerable importance for food and non-food applications. Its metabolism has been subject of extensive research over the past decades. Despite its importance, a description of the complete inventory of genes involved in starch metabolism and their genome organization in potato plants is still missing. Moreover, mechanisms regulating the expression of starch genes in leaves and tubers remain elusive with regard to differences between transitory and storage starch metabolism, respectively. This study aimed at identifying and mapping the complete set of potato starch genes, and to study their expression pattern in leaves and tubers using different sets of transcriptome data. Moreover, we wanted to uncover transcription factors co-regulated with starch accumulation in tubers in order to get insight into the regulation of starch metabolism. Results We identified 77 genomic loci encoding enzymes involved in starch metabolism. Novel isoforms of many enzymes were found. Their analysis will help to elucidate mechanisms of starch biosynthesis and degradation. Expression analysis of starch genes led to the identification of tissue-specific isoenzymes suggesting differences in the transcriptional regulation of starch metabolism between potato leaf and tuber tissues. Selection of genes predominantly expressed in developing potato tubers and exhibiting an expression pattern indicative for a role in starch biosynthesis enabled the identification of possible transcriptional regulators of tuber starch biosynthesis by co-expression analysis. Conclusions This study provides the annotation of the complete set of starch metabolic genes in potato plants and their genomic localizations. Novel, so far undescribed, enzyme isoforms were revealed. Comparative transcriptome analysis enabled the identification of tuber- and leaf-specific isoforms of starch genes. This finding suggests distinct regulatory mechanisms in transitory and storage starch metabolism. Putative regulatory proteins of starch biosynthesis in potato tubers have been identified by co-expression and their expression was verified by quantitative RT-PCR

    How Potato Plants Take the Heat?

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    AbstractPotato is the third most important food crop in the world after rice and wheat. Because of its widely distributed cultivation and high yields, it is considered a critical species in terms of food security in face of a growing world population. However, potato is particularly vulnerable to high temperature during various stages of its life cycle. Elevated temperatures strongly suppress tuberization, negatively affect storage and shelf life of tubers and reduce fitness of seed potatoes. Breeding new heat-stress tolerant cultivars is therefore an urgent need for sustainable increases in potato production. To achieve this goal an integrated approach combining physiology, biochemistry and molecular genetics is followed to analyze the impact of elevated temperatures on source-sink relations of potato plants, potato tuber development, starch accumulation and tuber quality and tuber dormancy. First results indicate that heat effects source-sink relations by altered expression of the tuber inducing signal FT, by stimulating shade-avoidance responses of the shoot and by decreasing sink-strength of developing tubers. Sink strength of growing potato tubers is mainly regulated by the activity of sucrose synthase. Measuring sucrose synthase expression and activity of heat grown potato tubers revealed a significant down-regulation of the enzyme which is consistent with reduced tuber growth. Interestingly, genetic variation in the activity of sucrose synthase exists, potentially enabling selection of potato varieties with heat-tolerant sucrose synthase isoforms. Although FT seems to play a major role in regulating tuberization, sink-derived and additional source signals are likely to be involved in orchestrating the heat-induced shift in assimilate allocation. This assumption is based on experiments in which soil and air temperatures of pot grown potato plants were independently controlled in growth chambers and transcript as well as sugar and enzyme profiles were recorded. Results of this analysis and their implication to improve heat tolerance of potato plants will be discussed

    What led Tel Aviv to become a leading entrepreneurial ecosystem?

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    “How has Tel Aviv become a leading entrepreneurial ecosystem? ” This thesis investigates the factors behind the growing success of Tel Aviv as an entrepreneurial scene. The economic capital of Israel has become one of the most important clusters of innovation in the World (Engel & del-Palacio, 2011). By analysing these factors with key entrepreneurial actors, the hopes were to find new qualitative evidence to back up the statistics. The aim of the thesis was to use qualitative interviews with chosen entrepreneurs and investors to give insights in Tel Aviv and how it has become a flourishing ecosystem. This has in turn enhanced the previous research on Knowledge-Intensive entrepreneurship by adding a singular case study. Analysing the Tel Aviv ecosystem allowed me to find ten different factors of its success. These can potentially be used as inspiration points for stimulating clusters of innovation around the World.MSc in Knowledge-based Entrepreneurshi
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