The molecular control of tomato fruit quality traits: the trade off between visual attributes, shelf life and nutritional value

Tomato (Solanum lycopersicum) is an established model to study fleshy fruit development and ripening and is an important crop in terms of its economic and nutritional value. Tomato fruit quality is a function of metabolite content which is prone to physiological changes related to fruit development and ripening. It has been described some ripening tomato mutants, delayed fruit deterioration (DFD), non-ripening (NOR) and ripening-inhibitor (RIN) which substantially extend “shelf life” in tomato for up to several months when defined in terms of softening, water loss and resistance to postharvest biotic infection. However, it is not known whether this extension in “shelf life” is in fact a desirable objective from the perspective of nutritional quality of the fruits. The aim of this work was to use a metabolomics approach join to genomic tools to characterize compositional changes (sugars, amino acids, organic acids and carotenoids) of non-softening tomato mutants reported (DFD, NOR and RIN) in comparison with the normally softening fruits (Ailsa Craig and M82) during ripening and postharvest shelf-life. Important results related with ripening gene expression and metabolic evolutions are shown

Gene expression atlas of fruit ripening and transcriptome assembly from RNA-seq data in octoploid strawberry (Fragaria × ananassa)

RNA-seq has been used to perform global expression analysis of the achene and the receptacle at four stages of fruit ripening, and of the roots and leaves of strawberry (Fragaria × ananassa). About 967 million reads and 191 Gb of sequence were produced, using Illumina sequencing. Mapping the reads in the related genome of the wild diploid Fragaria vesca revealed differences between the achene and receptacle development program, and reinforced the role played by ethylene in the ripening receptacle. For the strawberry transcriptome assembly, a de novo strategy was followed, generating separate assemblies for each of the ten tissues and stages sampled. The Trinity program was used for these assemblies, resulting in over 1.4 M isoforms. Filtering by a threshold of 0.3 FPKM, and doing Blastx (E-value < 1 e-30) against the UniProt database of plants reduced the number to 472,476 isoforms. Their assembly with the MIRA program (90% homology) resulted in 26,087 contigs. From these, 91.34 percent showed high homology to Fragaria vesca genes and 87.30 percent Fragaria iinumae (BlastN E-value < 1 e-100). Mapping back the reads on the MIRA contigs identified polymorphisms at nucleotide level, using FREEBAYES, as well as estimate their relative abundance in each sample

Flux balance analysis of metabolism during growth by osmotic cell expansion and its application to tomato fruits

Cell expansion is a significant contributor to organ growth and is driven by the accumulation of osmolytes to increase cell turgor pressure. Metabolic modelling has the potential to provide insights into the processes that underpin osmolyte synthesis and transport, but the main computational approach for predicting metabolic network fluxes, flux balance analysis (FBA), often uses biomass composition as the main output constraint and ignores potential changes in cell volume. Here we present GrOE‐FBA (Growth by Osmotic Expansion ‐ Flux Balance Analysis), a framework that accounts for both the metabolic and ionic contributions to the osmotica that drive cell expansion, as well as the synthesis of protein, cell wall and cell membrane components required for cell enlargement. Using GrOE‐FBA, the metabolic fluxes in dividing and expanding cell were analyzed, and the energetic costs for metabolite biosynthesis and accumulation in the two scenarios were found to be surprisingly similar. The expansion phase of tomato fruit growth was also modelled using a multi‐phase single optimization GrOE‐FBA model and this approach gave accurate predictions of the major metabolite levels throughout fruit development as well as revealing a role for transitory starch accumulation in ensuring optimal fruit development

Abiotic stresses differentially affect the expression of 0-methyltransferase genes related to methoxypyrazine biosynthesis in seeded and parthenocarpic fruits of Vitis vinifera (L.)

Univ Talca, Fac Ciencias Agr, Ctr Tecnol Vid & Vino, Talca, Chile; Vallarino, JG (Vallarino, Jose G.); Verdugo-Alegria, C (Verdugo-Alegria, Claudio); Moreno, YM (Moreno, Yerko M.)MPs (3-alkyl-2-methoxypyrazines) are grape-derived aroma compounds that are associated with detrimental herbaceous flavours in some wines. It is well known that several viticultural and environmental parameters can modulate MP concentrations in grapes, although comprehensive molecular studies have not been conducted in this field. Although the biosynthesis pathway of MPs has not been fully elucidated, four Vitis vinifera 0-methyltransferase genes (VvOMT1-4) have been related to be involved in MP biosynthesis. We assessed whether different abiotic stresses induction have an impact on MP levels in grapes and wines from seeded and parthenocarpic fruits. Our results show that the timing of VvOMT3 expression is associated with the period of MPs accumulation in seeded fruits during both abiotic stresses, whereas no association was found in parthenocarpic fruits. These results are discussed in the context of how different viticultural practices can modulate VvOMT gene expression, which has a direct impact on MPs levels in wines. (C) 2014 Elsevier Ltd. All rights reserved

Egg components vary independently of each other in the facultative siblicidal Black-legged Kittiwake Rissa tridactyla

Egg composition varies both within and between clutches, and mothers are expected to alter their deposition of resources to the egg depending on environmental conditions and breeding strategies. Within-clutch variation in egg composition has been proposed to reflect an adaptive maternal strategy influencing sibling competition. In species with brood reduction, mothers should reinforce brood hierarchies due to hatching asynchrony and favour senior chicks by making first-laid eggs larger, richer in nutrients, with higher testosterone and carotenoid levels and lower corticosterone concentrations than last-laid eggs [parental favouritism hypothesis (PFH)]. Moreover, mothers that are of better quality and/or experience better feeding conditions during laying are expected to increase their deposition of resources to the egg, resulting in differences between clutches [investment hypothesis (IH)]. Several components may act together to provide an optimal reproductive strategy, but studies of variation in different egg components in the same egg are relatively rare. We analysed egg size, testosterone and corticosterone concentrations and carotenoids measured as yolk colour between and within clutches for the facultative siblicidal Black-legged Kittiwake Rissa tridactyla. First-laid eggs were larger, contained lower testosterone, higher yolk colour score, and similar corticosterone levels than last-laid eggs. Thus, only differences in egg size and yolk colour supported the PFH. We used within-clutch egg size dimorphism as an indicator of the quality of the mother or the feeding conditions during laying. In support of the IH, we found that mothers of better quality or that experienced better feeding conditions deposited more corticosterone into their eggs. High corticosterone levels may benefit nestlings when there is no brood reduction but high sibling competition is present. We found no support for the hypothesis that egg components are mutually adjusted to each other and we discuss the possible reasons for this