2,836 research outputs found
Mechanical Unfolding of a Simple Model Protein Goes Beyond the Reach of One-Dimensional Descriptions
We study the mechanical unfolding of a simple model protein. The Langevin
dynamics results are analyzed using Markov-model methods which allow to
describe completely the configurational space of the system. Using transition
path theory we also provide a quantitative description of the unfolding
pathways followed by the system. Our study shows a complex dynamical scenario.
In particular, we see that the usual one-dimensional picture: free-energy vs
end-to-end distance representation, gives a misleading description of the
process. Unfolding can occur following different pathways and configurations
which seem to play a central role in one-dimensional pictures are not the
intermediate states of the unfolding dynamics.Comment: 10 pages, 6 figure
Energy versus information based estimations of dissipation using a pair of magnetic colloidal particles
Using the framework of stochastic thermodynamics, we present an experimental
study of a doublet of magnetic colloidal particles which is manipulated by a
time-dependent magnetic field. Due to hydrodynamic interactions, each bead
experiences a state-dependent friction, which we characterize using a
hydrodynamic model. In this work, we compare two estimates of the dissipation
in this system: the first one is energy based since it relies on the measured
interaction potential, while the second one is information based since it uses
only the information content of the trajectories. While the latter only offers
a lower bound of the former, we find it to be simple to implement and of
general applicability to more complex systems.Comment: Main text: 5 pages, 4 figures. Supplementary material: 5 pages, 5
figure
The Stellar Composition of the Star Formation Region CMa R1. II. Spectroscopic and Photometric Observations of 9 Young Stars
We present new high and low resolution spectroscopic and photometric data of
nine members of the young association CMa R1. All the stars have circumstellar
dust at some distance as could be expected from their association with
reflection nebulosity. Four stars (HD 52721, HD 53367, LkHalpha 220 and
LkHalpha 218) show Halpha emission and we argue that they are Herbig Be stars
with discs. Our photometric and spectroscopic observations on these stars
reveal new characteristics of their variability. We present first
interpretations of the variability of HD 52721, HD 53367 and the two LkHalpha
stars in terms of a partially eclipsing binary, a magnetic activity cycle and
circumstellar dust variations, respectively. The remaining five stars show no
clear indications of Halpha emission in their spectra, although their spectral
types and ages are comparable with those of HD 52721 and HD 53367. This
indicates that the presence of a disc around a star in CMa R1 may depend on the
environment of the star. In particular we find that all Halpha emission stars
are located at or outside the arc-shaped border of the H II region, which
suggests that the stars inside the arc have lost their discs through
evaporation by UV photons from nearby O stars, or from the nearby (< 25 pc)
supernova, about 1 Myr ago.Comment: 17 pages, 13 figures, accepted by MNRA
Three-photon detachment of electrons from the fluorine negative ion
Absolute three-photon detachment cross sections are calculated for the
fluorine negative ion within the lowest-order perturbation theory. The Dyson
equation of the atomic many-body theory is used to obtain the ground-state 2p
wavefunction with correct asymptotic behaviour, corresponding to the true
(experimental) binding energy. We show that in accordance with the adiabatic
theory (Gribakin and Kuchiev 1997 {Phys. Rev. A} {\bf 55} 3760) this is crucial
for obtaining absolute values of the multiphoton cross sections. Comparisons
with other calculations and experimental data are presented.Comment: 10 pages, two figures, Latex, IOP styl
A New Technique for Determining the Properties of a Narrow -channel Resonance at a Muon Collider
We explore an alternative to the usual procedure of scanning for determining
the properties of a narrow -channel resonance. By varying the beam energy
resolution while sitting on the resonance peak, the width and branching ratios
of the resonance can be determined. The statistical accuracy achieved is
superior to that of the usual scan procedure in the case of a light SM-like
Higgs boson with \mh>130\gev or for the lightest pseudogoldstone boson of a
strong electroweak breaking model if \mpzero>150\gev.Comment: 4 pages, 1 figur
Semi-Supervised Overlapping Community Finding based on Label Propagation with Pairwise Constraints
Algorithms for detecting communities in complex networks are generally
unsupervised, relying solely on the structure of the network. However, these
methods can often fail to uncover meaningful groupings that reflect the
underlying communities in the data, particularly when those structures are
highly overlapping. One way to improve the usefulness of these algorithms is by
incorporating additional background information, which can be used as a source
of constraints to direct the community detection process. In this work, we
explore the potential of semi-supervised strategies to improve algorithms for
finding overlapping communities in networks. Specifically, we propose a new
method, based on label propagation, for finding communities using a limited
number of pairwise constraints. Evaluations on synthetic and real-world
datasets demonstrate the potential of this approach for uncovering meaningful
community structures in cases where each node can potentially belong to more
than one community.Comment: Fix table
Modelling of the reef benthic habitat distribution within the Cabrera National Park (Western Mediterranean Sea)
Habitat spatial distribution is essential to know where to focus the protection of the seafloor resources. In this work, the bathymetry and backscatter seabed data show the importance of remote sensing applications and geospatial tools to have detailed information of the areas studied. The highresolution data enable to explore the environmental characteristics of selected Mediterranean habitats. These data were combined with available samples for ground truthing the habitat distribution model in the southeast of Cabrera National Park. The habitat modelling results show the high value of the studied area for ecological research. Unique communities of large filterers, including sponges, ascidians and bryozoans, were detected in this area. This study presents a potential habitat distribution map of the vulnerable reef habitat 1170, protected under the UE-Directive on the conservation of Habitats, Flora and Fauna, on the southeast margin of Cabrera Island.Versión del edito
Immunization of networks with community structure
In this study, an efficient method to immunize modular networks (i.e.,
networks with community structure) is proposed. The immunization of networks
aims at fragmenting networks into small parts with a small number of removed
nodes. Its applications include prevention of epidemic spreading, intentional
attacks on networks, and conservation of ecosystems. Although preferential
immunization of hubs is efficient, good immunization strategies for modular
networks have not been established. On the basis of an immunization strategy
based on the eigenvector centrality, we develop an analytical framework for
immunizing modular networks. To this end, we quantify the contribution of each
node to the connectivity in a coarse-grained network among modules. We verify
the effectiveness of the proposed method by applying it to model and real
networks with modular structure.Comment: 3 figures, 1 tabl
Top quark production at future lepton colliders in the asymptotic regime
The production of a tt(bar) pair from lepton-antilepton annihilation is
considered for values of the center of mass energy much larger than the top
mass, typically of the few TeV size. In this regime a number of simplifications
occurs that allows to derive the leading asymptotic terms of various
observables using the same theoretical description that was used for light
quark production. Explicit examples are shown for the Standard Model and the
Minimal Supersymmetric Standard Model cases.Comment: 20 pages and 13 figures. e-mail: [email protected]
Detecting modules in dense weighted networks with the Potts method
We address the problem of multiresolution module detection in dense weighted
networks, where the modular structure is encoded in the weights rather than
topology. We discuss a weighted version of the q-state Potts method, which was
originally introduced by Reichardt and Bornholdt. This weighted method can be
directly applied to dense networks. We discuss the dependence of the resolution
of the method on its tuning parameter and network properties, using sparse and
dense weighted networks with built-in modules as example cases. Finally, we
apply the method to data on stock price correlations, and show that the
resulting modules correspond well to known structural properties of this
correlation network.Comment: 14 pages, 6 figures. v2: 1 figure added, 1 reference added, minor
changes. v3: 3 references added, minor change
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