Comparison of Small- and Large-scale Ultrafiltration Systems for Organic Carbon and Metals in Freshwater at Low Concentration Factor

Interdisciplinary studies on aquatic environments and cross-validation of laboratory vs. field results will likely increase the need for simultaneous use of large- and small-scale ultrafiltration systems. In this study, a comparison of two ultrafiltration systems differing in scale (PrepScale and PelliconXL, Millipore; membrane areas 0.54m2 and 0.005m2, respectively), was made for the cut-offs 3 and 300kDa. Large systems are useful for their high permeate throughput, while small systems are necessary when the amount of sample is limited. The ability of PrepScale and PelliconXL systems to provide comparable results for organic carbon fractionation was studied for polysaccharide solutions and natural freshwaters. In the latter, the colloidal proportions of different trace metals (V, Cr, Mn, Co, Ni, Cu, Sb, and U) were also determined. Although the colloidal proportions obtained with PelliconXL 3kDa were sometimes slightly higher than with PrepScale 3kDa (principally for DOC and U in natural waters), Mann-Whitney statistical test showed no significant difference in the overall fractionation properties of the two systems. Our observations show that reaching high concentration factors lead to a strong modification of colloids size distribution in the range 50-2,000nm and thus low concentration factors are preferable to preserve the colloid integrit

Characterisation and validation of insertions and deletions in 173 patient exomes.

Recent advances in genomics technologies have spurred unprecedented efforts in genome and exome re-sequencing aiming to unravel the genetic component of rare and complex disorders. While in rare disorders this allowed the identification of novel causal genes, the missing heritability paradox in complex diseases remains so far elusive. Despite rapid advances of next-generation sequencing, both the technology and the analysis of the data it produces are in its infancy. At present there is abundant knowledge pertaining to the role of rare single nucleotide variants (SNVs) in rare disorders and of common SNVs in common disorders. Although the 1,000 genome project has clearly highlighted the prevalence of rare variants and more complex variants (e.g. insertions, deletions), their role in disease is as yet far from elucidated.We set out to analyse the properties of sequence variants identified in a comprehensive collection of exome re-sequencing studies performed on samples from patients affected by a broad range of complex and rare diseases (N = 173). Given the known potential for Loss of Function (LoF) variants to be false positive, we performed an extensive validation of the common, rare and private LoF variants identified, which indicated that most of the private and rare variants identified were indeed true, while common novel variants had a significantly higher false positive rate. Our results indicated a strong enrichment of very low-frequency insertion/deletion variants, so far under-investigated, which might be difficult to capture with low coverage and imputation approaches and for which most of study designs would be under-powered. These insertions and deletions might play a significant role in disease genetics, contributing specifically to the underlining rare and private variation predicted to be discovered through next generation sequencing

Length-weight relationships of eight Asian freshwater fish species in Nam Theun 2 Reservoir (Laos PDR)

Length-weight relationships (LWRs) were determined for eight Asian freshwater fish species that were not yet recorded in any peer-reviewed journal indexed in the Web of Science or the FishBase database. Fish specimens from Nam Theun 2 reservoir in Lao PDR, were collected from April 2012 to August 2016 using several methods to cover a large size-spectrum for each species. For LWRs using the general equation from Beckman (1948), the parameter b (slope value on the growth pattern) ranges from 2.908 (Puntius brevis) to 3.429 (Rasbora paviana). This study provides an update in maximum lengths for two species and first LWRs for eight common freshwater species found mainly in reservoirs, and thus represents a means for further population dynamic evolution analyses and local fisheries management

Methane and nitrous oxide annual emissions from an old eutrophic temperate reservoir

Two greenhouse gases-methane (CH4) and nitrous oxide (N2O) - were monitored monthly during one year (2011) at the Eguzon Reservoir in France. The objective of the study was to quantify for the first time in a temperate area the total emissions of these gases through the main emission pathways (diffusion and bubbling from the reservoir, degassing and downstream diffusion). The reservoir was impounded in 1926 and had, in 2011, a eutrophic status promoting high organic matter degradation and nitrification-denitrification, all favouring CH4 and N2O production. CH4 and N2O emissions were dominated by diffusion from the reservoir surface (respectively 78.0% and 92.3%). Ebullition was only observed for CH4 and accounted for 14.0% of total CH4 emissions. Downstream degassing and diffusion represented 8.1% of the total CH4 emissions and 7.7% of the total N2O emissions

Association of iron oligomeric species with natural organic matter: a combined EELS and Mössbauer investigation

International audienceThe nature of the interaction between iron oxyhydroxide compounds and natural organic matter (NOM) may take various forms and is still a matter of debate. It is an important field to understand, especially for water treatment applications and for the knowledge of iron transport in the environment. The nature of association reached between iron oligomeric species and NOM is here investigated using Mössbauer spectroscopy and electron energy-loss spectroscopy (EELS) at the Fe-L3 edge. Raw water NOM taken from Moselle River (France), natural humic substances extracted from the riverine suspended matter, and a synthesized humic-like substance, are coagulated with iron nitrate according to a jar-test procedure. The results from Mössbauer spectroscopy indicate that Fe is present in an octahedral coordination environment, which is consistent with prior X-ray absorption spectroscopy reported in the literature. The areas beneath the peaks (Fe L3 edge) and the peak shapes of EELS spectra differ according to the origin of the organic matter, suggesting that various types of Fe populations can be distinguished using the EELS technique. Combining the selectivity of both Mössbauer spectroscopy for identifying trace, poorly crystalline Fe solids, oxidation state and of EELS for being able to characterize the population of Fe based on L-edge spectra, appears promising for characterizing Fe in systems containing NOM