LAF1, a MYB transcription activator for phytochrome A signaling

The photoreceptor phytochrome (phy) A has a well-defined role in regulating gene expression in response to specific light signals. Here, we describe a new Arabidopsis mutant, laf1 (long after far-red light 1) that has an elongated hypocotyl specifically under far-red light. Gene expression studies showed that laf1 has reduced responsiveness to continuous far-red light but retains wild-type responses to other light wavelengths. As far-red light is only perceived by phyA, our results suggest that LAF1 is specifically involved in phyA signal transduction. Further analyses revealed that laf1 is affected in a subset of phyA-dependent responses and the phenotype is more severe at low far-red fluence rates. LAF1 encodes a nuclear protein with strong homology with the R2R3-MYB family of DNA-binding proteins. Experiments using yeast cells identified a transactivation domain in the C-terminal portion of the protein. LAF1 is constitutively targeted to the nucleus by signals in its N-terminal portion, and the full-length protein accumulates in distinct nuclear speckles. This accumulation in speckles is abolished by a point mutation in a lysine residue (K258R), which might serve as a modification site by a small ubiquitin-like protein (SUMO)

TMAP ad hoc Working Group Fish Progress report 2007

Building on previous work done by the TMAP ad hoc Working Group Fish, a meeting and a workshop were held in Hamburg in June and October 2007. The most important aim of both was to come to an agreement on how to proceed with the data preparations and analyses, and to facilitate the exchange of data and analyses procedures. The most advanced result that we can provide now is to monitor the changes in fish fauna in an effective way by making the best use of the ongoing Wadden Sea surveys and to develop a system by which we can adequately describe trends in a consistent way for future quality status reports. The work of the TMAP ad hoc Working Group Fish is building step by step toward such a system, and will eventually lead to a more complete picture of the status of fish in the Trilateral Wadden Sea area

Vortex wandering in a forest of splayed columnar defects

We investigate the scaling properties of single flux lines in a random pinning landscape consisting of splayed columnar defects. Such correlated defects can be injected into Type II superconductors by inducing nuclear fission or via direct heavy ion irradiation. The result is often very efficient pinning of the vortices which gives, e.g., a strongly enhanced critical current. The wandering exponent \zeta and the free energy exponent \omega of a single flux line in such a disordered environment are obtained analytically from scaling arguments combined with extreme-value statistics. In contrast to the case of point disorder, where these exponents are universal, we find a dependence of the exponents on details in the probability distribution of the low lying energies of the columnar defects. The analytical results show excellent agreement with numerical transfer matrix calculations in two and three dimensions.Comment: 11 pages, 9 figure

Thermodynamics of Mesoscopic Vortex Systems in 1+1 Dimensions

The thermodynamics of a disordered planar vortex array is studied numerically using a new polynomial algorithm which circumvents slow glassy dynamics. Close to the glass transition, the anomalous vortex displacement is found to agree well with the prediction of the renormalization-group theory. Interesting behaviors such as the universal statistics of magnetic susceptibility variations are observed in both the dense and dilute regimes of this mesoscopic vortex system.Comment: 4 pages, REVTEX, 6 figures included. Comments and suggestions can be sent to [email protected]

Incommensuration Effects and Dynamics in Vortex Chains

We examine the motion of one-dimensional (1D) vortex matter embedded in a 2D vortex system with weak pinning using numerical simulations. We confirm the conjecture of Matsuda et al. [Science 294, 2136 (2001)] that the onset of the temperature induced motion of the chain is due to an incommensuration effect of the chain with the periodic potential created by the bulk vortices. In addition, under an applied driving force we find a two stage depinning transition, where the initial depinning of the vortex chain occurs through soliton like pulses. When an ac drive is added to the dc drive, we observe phase locking of the moving vortex chain.Comment: 4 pages, 4 postscript figure

Elasticity-driven interaction between vortices in type-II superconductors

The contribution to the vortex lattice energy which is due to the vortex-induced strains is calculated covering all the magnetic field range which defines the vortex state. This contribution is compared with previously reported ones what shows that, in the most part of the vortex state, it has been notably underestimated until now. The reason of such underestimation is the assumption that only the vortex cores induce strains. In contrast to what is generally assumed, both core and non-core regions are important sources of strains in high-$\kappa$ superconductors.Comment: 10 pages, 1 figure, revtex

AX-PET: A novel PET concept with G-APD readout

Abstract The AX-PET collaboration has developed a novel concept for high resolution PET imaging to overcome some of the performance limitations of classical PET cameras, in particular the compromise between spatial resolution and sensitivity introduced by the parallax error. The detector consists of an arrangement of long LYSO scintillating crystals axially oriented around the field of view together with arrays of wave length shifter strips orthogonal to the crystals. This matrix allows a precise 3D measurement of the photon interaction point. This is valid both for photoelectric absorption at 511 keV and for Compton scattering down to deposited energies of about 100 keV. Crystals and WLS strips are individually read out using Geiger-mode Avalanche Photo Diodes (G-APDs). The sensitivity of such a detector can be adjusted by changing the number of layers and the resolution is defined by the crystal and strip dimensions. Two AX-PET modules were built and fully characterized in dedicated test set-ups at CERN, with point-like 22 Na sources. Their performance in terms of energy ( R energy ≈ 11.8 % (FWMH) at 511 keV) and spatial resolution was assessed ( σ axial ≈ 0.65 mm ), both individually and for the two modules in coincidence. Test campaigns at ETH Zurich and at the company AAA allowed the tomographic reconstructions of more complex phantoms validating the 3D reconstruction algorithms. The concept of the AX-PET modules will be presented together with some characterization results. We describe a count rate model which allows to optimize the planing of the tomographic scans

The workload of web-based consultations with atopic eczema patients at home

Abstract Background Atopic eczema is a chronic inflammatory non-contagious skin disease characterised by intensive itch and inflamed skin. Due to its chronic and relapsing course atopic eczema imposes a great burden on affected families. Review articles about home care telemedicine have indicated advantageous effects of home telehealth. However, few studies have investigated how home care telemedicine applications affect the workload of the clinician. Methods The use of a web-based counselling system was recorded through computerised logging. The doctor who answered the requests sent via the Internet recorded the amount of time needed for reading and answering 93 consecutive requests. Results The time needed by the physician to read and answer a request was less than 5 minutes in 60% of the cases. The doctor spent significantly more time to answer requests that had photographs attached compared to requests without photographs (P = 0.005). The time needed to answer requests received during the winter season (October-March) was significantly longer than the rest of the year (P = 0.023). There was no correlation between the answering time and the age of the patient. Conclusions Individual web-based follow-up of atopic eczema patients at home is feasible. The amount of time needed for the doctor to respond to a request from the patient appears to be small. The answering time seems to depend on whether photographs are supplied and also on seasonal variations of disease activity. Since the management of atopic eczema is complex involving many different types of treatments and educational aspects, we expect this type of communication to be useful also to other chronic disease patients requiring close follow-up.</p

Effects of gap anisotropy upon the electronic structure around a superconducting vortex

An isolated single vortex is considered within the framework of the quasiclassical theory. The local density of states around a vortex is calculated in a clean type II superconductor with an anisotropy. The anisotropy of a superconducting energy gap is crucial for bound states around a vortex. A characteristic structure of the local density of states, observed in the layered hexagonal superconductor 2H-NbSe2 by scanning tunneling microscopy (STM), is well reproduced if one assumes an anisotropic s-wave gap in the hexagonal plane. The local density of states (or the bound states) around the vortex is interpreted in terms of quasiparticle trajectories to facilitate an understanding of the rich electronic structure observed in STM experiments. It is pointed out that further fine structures and extra peaks in the local density of states should be observed by STM.Comment: 11 pages, REVTeX; 20 PostScript figures; An Animated GIFS file for the star-shaped vortex bound states is available at http://mp.okayama-u.ac.jp/~hayashi/vortex.htm