Improving the Scalability of Multi-Agent Systems

There is an increasing demand for designers and developers to construct ever larger multi-agent systems. Such systems will be composed of hundreds or even thousands of autonomous agents. Moreover, in open and dynamic environments, the number of agents in the system at any one time will fluctuate significantly. To cope with these twin issues of scalability and variable numbers, we hypothesize that multi-agent systems need to be both /self-building/ (able to determine the most appropriate organizational structure for the system by themselves at run-time) and /adaptive/ (able to change this structure as their environment changes). To evaluate this hypothesis we have implemented such a multi-agent system and have applied it to the domain of automated trading. Preliminary results supporting the first part of this hypothesis are presented: adaption and self-organization do indeed make the system better able to cope with large numbers of agents

Dating Thach Lac: cryptic CaCO3 diagenesis in archaeological food shells and implications for C-14

In many locations around the world, shell radiocarbon dates underpin archaeological research. The dating of shell brings the chronological relationship between the sample and target event (e.g., hunting and food preparation) into congruence, while shells are valuable geochemical proxies for understanding past climate dynamics and environments. However, this information can be lost as the shell, composites of biopolymers and carbonate minerals (mostly calcite and or aragonite), undergo diagenetic alteration. While studies into Pleistocene-age carbonates are common in the radiocarbon literature, there has been little research into the impact of alteration on Holocene-age shells used to interpret recent societal developments. The limits of our understanding of these diagenetic changes became evident when dating Placuna placenta (naturally calcitic) and Tegillarca granosa (naturally aragonitic) shells from the site of Thach Lac in Vietnam. These shells returned ages significantly younger than associated charcoal and terrestrial bone at the site, but standard tests for secondary recrystallization (XRD and staining techniques) did not indicate any alteration. Further investigation revealed that cryptic recrystallization (i.e., of the same crystal structure) had occurred in both the calcite and aragonite shells. This finding suggests recrystallization may have an undetected impact on some shell radiocarbon dates

Cytotoxic T lymphocyte–induced killing in the absence of granzymes A and B is unique and distinct from both apoptosis and perforin-dependent lysis

Cytotoxic T lymphocyte (CTL)–induced death triggered by the granule exocytosis pathway involves the perforin-dependent delivery of granzymes to the target cell. Gene targeting has shown that perforin is essential for this process; however, CTL deficient in the key granzymes A and B maintain the ability to kill their targets by granule exocytosis. It is not clear how granzyme AB−/− CTLs kill their targets, although it has been proposed that this occurs through perforin-induced lysis. We found that purified granzyme B or CTLs from wild-type mice induced classic apoptotic cell death. Perforin-induced lysis was far more rapid and involved the formation of large plasma membrane protrusions. Cell death induced by granzyme AB−/− CTLs shared similar kinetics and morphological characteristics to apoptosis but followed a distinct series of molecular events. Therefore, CTLs from granzyme AB−/− mice induce target cell death by a unique mechanism that is distinct from both perforin lysis and apoptosis

FIGHT-PD: A feasibility study of periodized boxing training for Parkinson disease

Background: Boxing training has become a popular form of exercise for people with Parkinson disease (PD). There is a dearth of high-quality feasibility, safety, and efficacy data on boxing training for PD. Feasibility of Instituting Graduated High-intensity Training (FIGHT-PD) aimed to examine these features in a periodized boxing training program featuring high-intensity physical and cognitive demands. Objective: To conduct a feasibility study, aiming to address deficiencies in the current knowledge base and to provide data for future studies. Design: Single-arm, open-label feasibility. Setting: University department and medical research institute. Participants: Ten people with early stage PD without contraindications to intense exercise, identified from a database of participants interested in boxing training. Interventions: A 15-week exercise program with three 1-hour sessions per week, with each session including warmup and then rounds of noncontact boxing using a training device. Three distinct blocks of 5 weeks including active rest. Boxers Development: focus on training technique Boxers Cardio: increasing intensity, including high-intensity interval training Boxers Brain: focus on cognitively challenging dual task training. Main Outcome Measures: Process, resource, and management measures including recruitment and retention rates, timelines and costs, and compliance with prescribed exercise targets. Clinical outcomes were safety (adverse events), training intensity (using heart rate and perceived exertion monitoring), tolerability (pain, fatigue, and sleep scores), and pre- and postprogram Unified Parkinson Disease Rating Scale (UPDRS-III). Results: Among 10 participants from a pool of 82 (recruitment rate = 12%), there were no withdrawals; 348/360 workouts were completed (adherence = 97.7%); 4/348 (1.1%) workouts were missed due to minor injury. Nine of 10 participants showed improvement in UPDRS motor score. Conclusions: FIGHT-PD provides a depth of feasibility and safety data, methodological detail, and preliminary results that is not described elsewhere and could provide a useful basis for future studies of boxing training for PD

Dating Thach Lac: cryptic CaCO3 diagenesis in archaeological food shells and implications for 14c

In many locations around the world, shell radiocarbon dates underpin archaeological research. The dating of shell brings the chronological relationship between the sample and target event (e.g., hunting and food preparation) into congruence, while shells are valuable geochemical proxies for understanding past climate dynamics and environments. However, this information can be lost as the shell, composites of biopolymers and carbonate minerals (mostly calcite and or aragonite), undergo diagenetic alteration. While studies into Pleistocene-age carbonates are common in the radiocarbon literature, there has been little research into the impact of alteration on Holocene-age shells used to interpret recent societal developments. The limits of our understanding of these diagenetic changes became evident when dating Placuna placenta (naturally calcitic) and Tegillarca granosa (naturally aragonitic) shells from the site of Thach Lac in Vietnam. These shells returned ages significantly younger than associated charcoal and terrestrial bone at the site, but standard tests for secondary recrystallization (XRD and staining techniques) did not indicate any alteration. Further investigation revealed that cryptic recrystallization (i.e., of the same crystal structure) had occurred in both the calcite and aragonite shells. This finding suggests recrystallization may have an undetected impact on some shell radiocarbon dates

Ecological risk assessment for deep-sea mining

Ecological risk assessment for deep-sea mining is challenging, given the data-poor state of knowledge of deep-sea ecosystem structure, process, and vulnerability. Polling and a scale-intensity-consequence approach (SICA) were used in an expert elicitation survey to rank risk sources and perceived vulnerabilities of habitats associated with seabed nodule, sulfide, and crust mineral resources. Experts identified benthic habitats associated with seabed minerals as most vulnerable to habitat removal with a high degree of certainty. Resource-associated benthic and pelagic habitats were also perceived to be at risk from plumes generated during mining activities, although there was not always consensus regarding vulnerabilities to specific risk sources from different types of plumes. Even for risk sources where habitat vulnerability measures were low, high uncertainties suggest that these risks may not yet be dismissed. Survey outcomes also underscore the need for risk assessment to progress from expert opinion with low certainty to data-rich and ecosystem-relevant scientific research assessments to yield much higher certainty. This would allow for design and deployment of effective precautionary and mitigation efforts in advance of commercial exploitation, and adaptive management strategies would allow for regulatory and guideline modifications in response to new knowledge and greater certainty

Modeling biomedical experimental processes with OBI

BACKGROUND: Experimental descriptions are typically stored as free text without using standardized terminology, creating challenges in comparison, reproduction and analysis. These difficulties impose limitations on data exchange and information retrieval. RESULTS: The Ontology for Biomedical Investigations (OBI), developed as a global, cross-community effort, provides a resource that represents biomedical investigations in an explicit and integrative framework. Here we detail three real-world applications of OBI, provide detailed modeling information and explain how to use OBI. CONCLUSION: We demonstrate how OBI can be applied to different biomedical investigations to both facilitate interpretation of the experimental process and increase the computational processing and integration within the Semantic Web. The logical definitions of the entities involved allow computers to unambiguously understand and integrate different biological experimental processes and their relevant components. AVAILABILITY: OBI is available at http://purl.obolibrary.org/obo/obi/2009-11-02/obi.ow

Developmental and tissue-specific expression of NITRs

Novel immune-type receptors (NITRs) are encoded by large multi-gene families and share structural and signaling similarities to mammalian natural killer receptors (NKRs). NITRs have been identified in multiple bony fish species, including zebrafish, and may be restricted to this large taxonomic group. Thirty-nine NITR genes that can be classified into 14 families are encoded on zebrafish chromosomes 7 and 14. Herein, we demonstrate the expression of multiple NITR genes in the zebrafish ovary and during embryogenesis. All 14 families of zebrafish NITRs are expressed in hematopoietic kidney, spleen and intestine as are immunoglobulin and T cell antigen receptors. Furthermore, all 14 families of NITRs are shown to be expressed in the lymphocyte lineage, but not in the myeloid lineage, consistent with the hypothesis that NITRs function as NKRs. Sequence analyses of NITR amplicons identify known alleles and reveal additional alleles within the nitr1, nitr2, nitr3, and nitr5 families, reflecting the recent evolution of this gene family

Impact of deploying multiple point-of-care tests with a 'sample first' approach on a sexual health clinical care pathway. A service evaluation.

OBJECTIVES: To assess clinical service value of STI point-of-care test (POCT) use in a 'sample first' clinical pathway (patients providing samples on arrival at clinic, before clinician consultation). Specific outcomes were: patient acceptability; whether a rapid nucleic acid amplification test (NAAT) for Chlamydia trachomatis/Neisseria gonorrhoeae (CT/NG) could be used as a POCT in practice; feasibility of non-NAAT POCT implementation for Trichomonas vaginalis (TV) and bacterial vaginosis (BV); impact on patient diagnosis and treatment. METHODS: Service evaluation in a south London sexual health clinic. Symptomatic female and male patients and sexual contacts of CT/NG-positive individuals provided samples for diagnostic testing on clinic arrival, prior to clinical consultation. Tests included routine culture and microscopy; CT/NG (GeneXpert) NAAT; non-NAAT POCTs for TV and BV. RESULTS: All 70 (35 males, 35 females) patients approached participated. The 'sample first' pathway was acceptable, with >90% reporting they were happy to give samples on arrival and receive results in the same visit. Non-NAAT POCT results were available for all patients prior to leaving clinic; rapid CT/NG results were available for only 21.4% (15/70; 5 males, 10 females) of patients prior to leaving clinic. Known negative CT/NG results led to two females avoiding presumptive treatment, and one male receiving treatment directed at possible Mycoplasma genitalium infection causing non-gonococcal urethritis. Non-NAAT POCTs detected more positives than routine microscopy (TV 3 vs 2; BV 24 vs 7), resulting in more patients receiving treatment. CONCLUSIONS: A 'sample first' clinical pathway to enable multiple POCT use was acceptable to patients and feasible in a busy sexual health clinic, but rapid CT/NG processing time was too long to enable POCT use. There is need for further development to improve test processing times to enable POC use of rapid NAATs