Toward On-Line Slag Composition Analysis: Optical Emissions from Laboratory Electric Arc

We acknowledge the support of Research Fund for Coal and Steel under grant agreement No. 709923, Academy of Finland for Genome of Steel grant No. 311934, Business Finland for Grant No. 4478/31/2019, Institute of Solid State Physics, University of Latvia as the Center of Excellence has received funding from the European Union’s Horizon 2020 Framework Programme H2020-WIDESPREAD-01-2016-2017-TeamingPhase2 under grant agreement No. 739508, project CAMART2.Electric arc furnaces and ladle furnaces have an important role in the future of steelmaking where CO 2 emissions have to be mitigated to an acceptable level. One way to address this goal is to optimize and improve the current practices by adjusting the chemistry and reactions with material additions or gas injections. These procedures would greatly benefit from on-line slag composition analysis. Since the electric arcs radiate throughout the melting, optical emission spectroscopy is a potential method for such analysis. In this study, optical emissions from the electric arc are measured in a laboratory environment. Dozens of atomic emission lines were correlated with Cr 2O 3, Fe 2O 3, Al 2O 3, SiO 2, MnO, MgO, CaO, CaF 2, V 2O 5, and Ni content of the slag together with correlation between CaF 2 and molecular optical emission bands of CaF. Optimal spectral resolution for industrial applications was deducted to be between 0.022 and 0.179 nm. © 2021, The Author(s). --//-- Published under the CC BY license.Academy of Finland for Genome of Steel 311934, 4478/31/2019; Research Fund for Coal and Steel 709923; Institute of Solid State Physics, University of Latvia as the Center of Excellence has received funding from the European Union’s Horizon 2020 Framework Programme H2020-WIDESPREAD-01-2016-2017-TeamingPhase2 under grant agreement No. 739508, project CAMART2

Mitochondrial dysfunction generates a growth-restraining signal linked to pyruvate in Drosophila larvae

ABSTRACTThe Drosophila bang-sensitive mutant tko25t, manifesting a global deficiency in oxidative phosphorylation due to a mitochondrial protein synthesis defect, exhibits a pronounced delay in larval development. We previously identified a number of metabolic abnormalities in tko25t larvae, including elevated pyruvate and lactate, and found the larval gut to be a crucial tissue for the regulation of larval growth in the mutant. Here we established that expression of wild-type tko in any of several other tissues of tko25t also partially alleviates developmental delay. The effects appeared to be additive, whilst knockdown of tko in a variety of specific tissues phenocopied tko25t, producing developmental delay and bang-sensitivity. These findings imply the existence of a systemic signal regulating growth in response to mitochondrial dysfunction. Drugs and RNAi-targeted on pyruvate metabolism interacted with tko25t in ways that implicated pyruvate or one of its metabolic derivatives in playing a central role in generating such a signal. RNA-seq revealed that dietary pyruvate-induced changes in transcript representation were mostly non-coherent with those produced by tko25t or high-sugar, consistent with the idea that growth regulation operates primarily at the translational and/or metabolic level.Peer reviewe

Phenotypic rescue of a Drosophila model of mitochondrial ANT1 disease

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beta carbonic anhydrase is required for female fertility in Drosophila melanogaster

Background: Carbonic anhydrases (CAs, EC 4.2.1.1) are ubiquitous enzymes that catalyze the reversible hydration reaction of carbon dioxide. CAs are present as six structurally divergent enzyme families: alpha, beta, gamma, delta, zeta and eta. beta-CAs have a wide distribution across different species including invertebrates. Previously, we showed that Drosophila melanogaster beta-CA is a highly active mitochondrial enzyme. In this study, we investigated the function of Drosophila beta-CA by silencing the expression of the beta-CA gene using UAS/GAL4-based RNA interference (RNAi) in Drosophila in vivo. Results: Crossing beta-CA RNAi lines over ubiquitous Actin driver flies did not produce any viable progeny, indicating that beta-CA expression is required for fly development. RNAi silencing of beta-CA ubiquitously in adult flies did not affect their survival rate or function of mitochondrial electron transport chain. Importantly, beta-CA RNAi led to impaired reproduction. All beta-CA knockdown females were sterile, and produced few or no eggs. Whole ovaries of knockdown females looked normal but upon cadherin staining, there was an apparent functional defect in migration of border cells, which are considered essential for normal fertilization. Conclusions: These results indicate that although Drosophila beta-CA is dispensable for survival of adult flies, it is essential for female fertility.Peer reviewe

Alternative oxidase confers nutritional limitation on Drosophila development

The mitochondrial alternative oxidase, AOX, present in most eukaryotes apart from vertebrates and insects, catalyzes the direct oxidation of ubiquinol by oxygen, by‐passing the terminal proton‐motive steps of the respiratory chain. Its physiological role is not fully understood, but it is proposed to buffer stresses in the respiratory chain similar to those encountered in mitochondrial diseases in humans. Previously, we found that the ubiquitous expression of AOX from Ciona intestinalis in Drosophila perturbs the development of flies cultured under low‐nutrient conditions (media containing only glucose and yeast). Here we tested the effects of a wide range of nutritional supplements on Drosophila development, to gain insight into the physiological mechanism underlying this developmental failure. On low‐nutrient medium, larvae contained decreased amounts of triglycerides, lactate, and pyruvate, irrespective of AOX expression. Complex food supplements, including treacle (molasses), restored normal development to AOX‐expressing flies, but many individual additives did not. Inhibition of AOX by treacle extract was excluded as a mechanism, since the supplement did not alter the enzymatic activity of AOX in vitro. Furthermore, antibiotics did not influence the organismal phenotype, indicating that commensal microbes were not involved. Fractionation of treacle identified a water‐soluble fraction with low solubility in ethanol, rich in lactate and tricarboxylic acid cycle intermediates, which contained the critical activity. We propose that the partial activation of AOX during metamorphosis impairs the efficient use of stored metabolites, resulting in developmental failure.</p

A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

Background: Chromatin immunoprecipitation coupled with massively parallel sequencing (ChIPseq)is increasingly being applied to study transcriptional regulation on a genome-wide scale. Whilenumerous algorithms have recently been proposed for analysing the large ChIP-seq datasets, theirrelative merits and potential limitations remain unclear in practical applications.Results: The present study compares the state-of-the-art algorithms for detecting transcriptionfactor binding sites in four diverse ChIP-seq datasets under a variety of practical research settings.First, we demonstrate how the biological conclusions may change dramatically when the differentalgorithms are applied. The reproducibility across biological replicates is then investigated as aninternal validation of the detections. Finally, the predicted binding sites with each method arecompared to high-scoring binding motifs as well as binding regions confirmed in independent qPCRexperiments.Conclusions: In general, our results indicate that the optimal choice of the computationalapproach depends heavily on the dataset under analysis. In addition to revealing valuableinformation to the users of this technology about the characteristics of the binding site detectionapproaches, the systematic evaluation framework provides also a useful reference to thedevelopers of improved algorithms for ChIP-seq data

Alendronate-induced disruption of actin cytoskeleton and inhibition of migration/invasion are associated with cofilin downregulation in PC-3 prostate cancer cells

Bisphosphonates are used for prevention of osteoporosis and metastatic bone diseases. Anti-invasive effects on various cancer cells have also been reported, but the mechanisms involved are not well-understood. We investigated the effects of the nitrogen-containing bisphosphonate alendronate (ALN) on the regulation of actin cytoskeleton in PC-3 cells. We analyzed the ALN effect on the organization and the dynamics of actin, and on the cytoskeleton-related regulatory proteins cofilin, p21-associated kinase 2 (PAK2), paxillin and focal adhesion kinase. Immunostainings of cofilin in ALN-treated PC-3 cells and xenografts were performed, and the role of cofilin in ALN-regulated F-actin organization and migration/invasion in PC-3 cells was analyzed using cofilin knockdown and transfection. We demonstrate that disrupted F-actin organization and decreased cell motility in ALN-treated PC-3 cells were associated with decreased levels of total and phosphorylated cofilin. PAK2 levels were also lowered but adhesion-related proteins were not altered. The knockdown of cofilin similarly impaired F-actin organization and decreased invasion of PC-3 cells, whereas in the cells transfected with a cofilin expressing vector, ALN treatment did not decrease cellular cofilin levels and migration as in mock transfected cells. ALN also reduced immunohistochemical staining of cofilin in PC-3 xenografts. Our results suggest that reduction of cofilin has an important role in ALN-induced disruption of the actin cytoskeleton and inhibition of the PC-3 cell motility and invasion. These data also support the idea that the nitrogen-containing bisphosphonates could be efficacious in inhibition of prostate cancer invasion and metastasis, if delivered in a pharmacological formulation accessible to the tumors.</p

Mitochondrial Dysfunction Plus High-Sugar Diet Provokes a Metabolic Crisis That Inhibits Growth

The Drosophila mutant tko(25t) exhibits a deficiency ofmitochondrial protein synthesis, leading to a global insufficiency of respiration and oxidative phosphorylation. This entrains an organismal phenotype of developmental delay and sensitivity to seizures induced bymechanical stress. We found that the mutant phenotype is exacerbated in a dose-dependent fashion by high dietary sugar levels. tko(25t) larvae were found to exhibit severe metabolic abnormalities that were further accentuated by high-sugar diet. These include elevated pyruvate and lactate, decreased ATP and NADPH. Dietary pyruvate or lactate supplementation phenocopied the effects of high sugar. Based on tissue-specific rescue, the crucial tissue in which this metabolic crisis initiates is the gut. It is accompanied by down-regulation of the apparatus of cytosolic protein synthesis and secretion at both the RNA and post-translational levels, including a novel regulation of S6 kinase at the protein level.Peer reviewe