Direct measurement of the size of 2003 UB313 from the Hubble Space Telescope

We have used the Hubble Space Telescope to directly measure the angular size of the large Kuiper belt object 2003 UB313. By carefully calibrating the point spread function of a nearby field star, we measure the size of 2003 UB313 to be 34.3$\pm$1.4 milliarcseconds, corresponding to a diameter of 2400$\pm$100 km or a size $\sim5$% larger than Pluto. The V band geometric albedo of 2003 UB313 is $86\pm7$%. The extremely high albedo is consistent with the frosty methane spectrum, the lack of red coloring, and the lack of observed photometric variation on the surface of 2003 UB313. Methane photolysis should quickly darken the surface of 2003 UB313, but continuous evaporation and redeposition of surface ices appears capable of maintaining the extreme alebdo of this body

Origin of spatial variations of scattering polarization in the wings of the Ca {\sc i} 4227 \AA line

Polarization that is produced by coherent scattering can be modified by magnetic fields via the Hanle effect. According to standard theory the Hanle effect should only be operating in the Doppler core of spectral lines but not in the wings. In contrast, our observations of the scattering polarization in the Ca {\sc i} 4227 \AA line reveals the existence of spatial variations of the scattering polarization throughout the far line wings. This raises the question whether the observed spatial variations in wing polarization have a magnetic or non-magnetic origin. A magnetic origin may be possible if elastic collisions are able to cause sufficient frequency redistribution to make the Hanle effect effective in the wings without causing excessive collisional depolarization, as suggested by recent theories for partial frequency redistribution with coherent scattering in magnetic fields. To model the wing polarization we apply an extended version of the technique based on the "last scattering approximation". This model is highly successful in reproducing the observed Stokes $Q/I$ polarization (linear polarization parallel to the nearest solar limb), including the location of the wing polarization maxima and the minima around the Doppler core, but it fails to reproduce the observed spatial variations of the wing polarization in terms of magnetic field effects with frequency redistribution. This null result points in the direction of a non-magnetic origin in terms of local inhomogeneities (varying collisional depolarization, radiation-field anisotropies, and deviations from a plane-parallel atmospheric stratification).Comment: Accepted in May 2009 for publication in The Astrophysical Journa

High-throughput Quantum Chemistry: Empowering the Search for Molecular Candidates behind Unknown Spectral Signatures in Exoplanetary Atmospheres

The identification of molecules in exoplanetary atmospheres is only possible thanks to the availability of high-resolution molecular spectroscopic data. However, due to its intensive and time-consuming generation process, at present, only on order 100 molecules have high-resolution spectroscopic data available, limiting new molecular detections. Using routine quantum chemistry calculations (i.e., scaled harmonic frequency calculations using the B97-1/def2-TZVPD model chemistry with median errors of 10cm-1), here we present a complementary high-throughput approach to rapidly generate approximate vibrational spectral data for 2743 molecules made from the biologically most important elements C, H, N, O, P and S. Though these data are not accurate enough to enable definitive molecular detections and does not seek to replace the need for high-resolution data, it has powerful applications in identifying potential molecular candidates responsible for unknown spectral features. We explore this application for the 4.1 micron (2439cm-1) feature in the atmospheric spectrum of WASP-39b, listing potential alternative molecular species responsible for this spectral line, together with SO2. Further applications of this big data compilation also include identifying molecules with strong absorption features that are likely detectable at quite low abundances, and training set for machine learning predictions of vibrational frequencies. Characterising exoplanetary atmospheres through molecular spectroscopy is essential to understand the planet's physico-chemical processes and likelihood of hosting life. Our rapidly generated quantum chemistry big data set will play a crucial role in supporting this understanding by giving directions into possible initial identifications of the more unusual molecules to emerge

The Processing Pathway of Prelamin A

The conversion of mammalian prelamin A to mature lamin A proceeds through the removal of 18 amino acids from the carboxyl terminus. The initial step in this processing is the isoprenylation of a CAAX box cysteine. This proteolytic event is distinctive for prelamin A among the known prenylated mammalian proteins. Since the carboxyl terminus of prelamin A is removed during maturation, it is not obvious that this protein would undergo the two reactions subsequent to prenylation observed in other CAAX box proteins-the endoproteolytic removal of the carboxyl-terminal 3 amino acids and the subsequent methylation of the now carboxyl-terminal cysteine. To characterize the maturation of prelamin A further, we have developed a CHO-K1 cell line that possesses a dexamethasone-inducible human prelamin A against a genetic background of high mevalonate uptake. Utilizing this cell line in association with antibodies specific to the transgenic prelamin A, we have been able to demonstrate directly in vivo that prelamin A undergoes farnesylation and carboxymethylation prior to conversion to lamin A, as is the case for other prenylated proteins. We have demonstrated previously that in the absence of isoprenylation, conversion of prelamin A to lamin A is blocked, but that unprocessed prelamin A is transported to the nucleus where it can still undergo maturation. Consistent with the implications of these prior studies, we now demonstrate the presence of both subunits of farnesyl-protein transferase in the nucleus

Segregation by thermal diffusion in granular shear flows

Segregation by thermal diffusion of an intruder immersed in a sheared granular gas is analyzed from the (inelastic) Boltzmann equation. Segregation is induced by the presence of a temperature gradient orthogonal to the shear flow plane and parallel to gravity. We show that, like in analogous systems without shear, the segregation criterion yields a transition between upwards segregation and downwards segregation. The form of the phase diagrams is illustrated in detail showing that they depend sensitively on the value of gravity relative to the thermal gradient. Two specific situations are considered: i) absence of gravity, and ii) homogeneous temperature. We find that both mechanisms (upwards and downwards segregation) are stronger and more clearly separated when compared with segregation criteria in systems without shear.Comment: 8 figures. To appear in J. Stat. Mec

Thermal diffusion segregation in granular binary mixtures described by the Enskog equation

Diffusion induced by a thermal gradient in a granular binary mixture is analyzed in the context of the (inelastic) Enskog equation. Although the Enskog equation neglects velocity correlations among particles which are about to collide, it retains spatial correlations arising from volume exclusion effects and thus it is expected to apply to moderate densities. In the steady state with gradients only along a given direction, a segregation criterion is obtained from the thermal diffusion factor $\Lambda$ measuring the amount of segregation parallel to the thermal gradient. As expected, the sign of the factor $\Lambda$ provides a criterion for the transition between the Brazil-nut effect (BNE) and the reverse Brazil-nut effect (RBNE) by varying the parameters of the mixture (masses, sizes, concentration, solid volume fraction, and coefficients of restitution). The form of the phase diagrams for the BNE/RBNE transition is illustrated in detail for several systems, with special emphasis on the significant role played by the inelasticity of collisions. In particular, an effect already found in dilute gases (segregation in a binary mixture of identical masses and sizes {\em but} different coefficients of restitution) is extended to dense systems. A comparison with recent computer simulation results shows a good qualitative agreement at the level of the thermal diffusion factor. The present analysis generalizes to arbitrary concentration previous theoretical results derived in the tracer limit case.Comment: 7 figures, 1 table. To appear in New J. Phys., special issue on "Granular Segregation

Human Amniocytes Are Receptive to Chemically Induced Reprogramming to Pluripotency

Restoring pluripotency using chemical compounds alone would be a major step forward in developing clinical-grade pluripotent stem cells, but this has not yet been reported in human cells. We previously demonstrated that VPA_ AFS cells, human amniocytes cultivated with valproic acid (VPA) acquired functional pluripotency while remaining distinct from human embryonic stem cells (hESCs), questioning the relationship between the modulation of cell fate and molecular regulation of the pluripotency network. Here, we used single-cell analysis and functional assays to reveal that VPA treatment resulted in a homogeneous population of self-renewing non-transformed cells that fulfill the hallmarks of pluripotency, i.e., a short G1 phase, a dependence on glycolytic metabolism, expression of epigenetic modifications on histones 3 and 4, and reactivation of endogenous OCT4 and downstream targets at a lower level than that observed in hESCs. Mechanistic insights into the process of VPA-induced reprogramming revealed that it was dependent on OCT4 promoter activation, which was achieved independently of the PI3K (phosphatidylinositol 3-kinase)/ AKT/ mTOR (mammalian target of rapamycin) pathway or GSK3 beta inhibition but was concomitant with the presence of acetylated histones H3K9 and H3K56, which promote pluripotency. Our data identify, for the first time, the pluripotent transcriptional and molecular signature and metabolic status of human chemically induced pluripotent stem cells