20,791 research outputs found
Involutivity of integrals for sine-Gordon, modified KdV and potential KdV maps
Closed form expressions in terms of multi-sums of products have been given in
\cite{Tranclosedform, KRQ} of integrals of sine-Gordon, modified Korteweg-de
Vries and potential Korteweg-de Vries maps obtained as so-called
-traveling wave reductions of the corresponding partial difference
equations. We prove the involutivity of these integrals with respect to
recently found symplectic structures for those maps. The proof is based on
explicit formulae for the Poisson brackets between multi-sums of products.Comment: 24 page
Red blood cells and other non-spherical capsules in shear flow: oscillatory dynamics and the tank-treading-to-tumbling transition
We consider the motion of red blood cells and other non-spherical
microcapsules dilutely suspended in a simple shear flow. Our analysis indicates
that depending on the viscosity, membrane elasticity, geometry and shear rate,
the particle exhibits either tumbling, tank-treading of the membrane about the
viscous interior with periodic oscillations of the orientation angle, or
intermittent behavior in which the two modes occur alternately. For red blood
cells, we compute the complete phase diagram and identify a novel
tank-treading-to-tumbling transition at low shear rates. Observations of such
motions coupled with our theoretical framework may provide a sensitive means of
assessing capsule properties.Comment: 11 pages, 4 figure
DeepCare: A Deep Dynamic Memory Model for Predictive Medicine
Personalized predictive medicine necessitates the modeling of patient illness
and care processes, which inherently have long-term temporal dependencies.
Healthcare observations, recorded in electronic medical records, are episodic
and irregular in time. We introduce DeepCare, an end-to-end deep dynamic neural
network that reads medical records, stores previous illness history, infers
current illness states and predicts future medical outcomes. At the data level,
DeepCare represents care episodes as vectors in space, models patient health
state trajectories through explicit memory of historical records. Built on Long
Short-Term Memory (LSTM), DeepCare introduces time parameterizations to handle
irregular timed events by moderating the forgetting and consolidation of memory
cells. DeepCare also incorporates medical interventions that change the course
of illness and shape future medical risk. Moving up to the health state level,
historical and present health states are then aggregated through multiscale
temporal pooling, before passing through a neural network that estimates future
outcomes. We demonstrate the efficacy of DeepCare for disease progression
modeling, intervention recommendation, and future risk prediction. On two
important cohorts with heavy social and economic burden -- diabetes and mental
health -- the results show improved modeling and risk prediction accuracy.Comment: Accepted at JBI under the new name: "Predicting healthcare
trajectories from medical records: A deep learning approach
Relationships between lower-body muscle structure and, lower-body strength, explosiveness and eccentric leg stiffness in adolescent athletes
The purpose of the present study was to determine whether any relationships were present between lower-body muscle structure and, lower-body strength, variables measured during a counter-movement jump (CMJ) and squat jump (SJ), and eccentric leg stiffness, in adolescent athletes. Thirty junior male (n = 23) and female (n = 7) surfing athletes (14.8 ± 1.7 y; 1.63 ± 0.09 m; 54.8 ± 12.1 kg) undertook lower-body muscle structure assessment with ultrasonography and performed a; CMJ, SJ and an isomet-ric mid-thigh pull (IMTP). In addition, eccentric leg stiffness was calculated from variables of the CMJ and IMTP. Moderate to very large relationships (r = 0.46-0.73) were identified be-tween the thickness of the vastus lateralis (VL) and lateral gas-trocnemius (LG) muscles, and VL pennation angle and; peak force (PF) in the CMJ, SJ and IMTP. Additionally, moderate to large relationships (r = 0.37-0.59) were found between eccentric leg stiffness and; VL and LG thickness, VL pennation angle, and LG fascicle length, with a large relationship (r = 0.59) also present with IMTP PF. These results suggest that greater thick-ness of the VL and LG were related to improved maximal dy-namic and isometric strength, likely due to increased hypertro-phy of the extensor muscles. Furthermore, this increased thickness was related to greater eccentric leg stiffness, as the associated enhanced lower-body strength likely allowed for greater neuromuscular activation, and hence less compliance, during a stretch-shortening cycle
Swinging of red blood cells under shear flow
We reveal that under moderate shear stress (of the order of 0.1 Pa) red blood
cells present an oscillation of their inclination (swinging) superimposed to
the long-observed steady tanktreading (TT) motion. A model based on a fluid
ellipsoid surrounded by a visco-elastic membrane initially unstrained (shape
memory) predicts all observed features of the motion: an increase of both
swinging amplitude and period (1/2 the TT period) upon decreasing the shear
stress, a shear stress-triggered transition towards a narrow shear stress-range
intermittent regime of successive swinging and tumbling, and a pure tumbling
motion at lower shear stress-values.Comment: 4 pages 5 figures submitted to Physical Review Letter
Gene Expression Signature in Adipose Tissue of Acromegaly Patients.
To study the effect of chronic excess growth hormone on adipose tissue, we performed RNA sequencing in adipose tissue biopsies from patients with acromegaly (n = 7) or non-functioning pituitary adenomas (n = 11). The patients underwent clinical and metabolic profiling including assessment of HOMA-IR. Explants of adipose tissue were assayed ex vivo for lipolysis and ceramide levels. Patients with acromegaly had higher glucose, higher insulin levels and higher HOMA-IR score. We observed several previously reported transcriptional changes (IGF1, IGFBP3, CISH, SOCS2) that are known to be induced by GH/IGF-1 in liver but are also induced in adipose tissue. We also identified several novel transcriptional changes, some of which may be important for GH/IGF responses (PTPN3 and PTPN4) and the effects of acromegaly on growth and proliferation. Several differentially expressed transcripts may be important in GH/IGF-1-induced metabolic changes. Specifically, induction of LPL, ABHD5, and NRIP1 can contribute to enhanced lipolysis and may explain the elevated adipose tissue lipolysis in acromegalic patients. Higher expression of TCF7L2 and the fatty acid desaturases FADS1, FADS2 and SCD could contribute to insulin resistance. Ceramides were not different between the two groups. In summary, we have identified the acromegaly gene expression signature in human adipose tissue. The significance of altered expression of specific transcripts will enhance our understanding of the metabolic and proliferative changes associated with acromegaly
A molecular perspective on the limits of life: Enzymes under pressure
From a purely operational standpoint, the existence of microbes that can grow
under extreme conditions, or "extremophiles", leads to the question of how the
molecules making up these microbes can maintain both their structure and
function. While microbes that live under extremes of temperature have been
heavily studied, those that live under extremes of pressure have been
neglected, in part due to the difficulty of collecting samples and performing
experiments under the ambient conditions of the microbe. However, thermodynamic
arguments imply that the effects of pressure might lead to different organismal
solutions than from the effects of temperature. Observationally, some of these
solutions might be in the condensed matter properties of the intracellular
milieu in addition to genetic modifications of the macromolecules or repair
mechanisms for the macromolecules. Here, the effects of pressure on enzymes,
which are proteins essential for the growth and reproduction of an organism,
and some adaptations against these effects are reviewed and amplified by the
results from molecular dynamics simulations. The aim is to provide biological
background for soft matter studies of these systems under pressure.Comment: 16 pages, 8 figure
Large-scale albuminuria screen for nephropathy models in chemically induced mouse mutants
Background/Aim: Phenotype-driven screening of a great pool of randomly mutant mice and subsequent selection of animals showing symptoms equivalent to human kidney diseases may result in the generation of novel suitable models for the study of the pathomechanisms and the identification of genes involved in kidney dysfunction. Methods: We carried out a large-scale analysis of ethylnitrosourea (ENU)-induced mouse mutants for albuminuria by using qualitative SDS-polyacrylamide gel electrophoresis. Results: The primary albuminuria screen preceded the comprehensive phenotypic mutation analysis in a part of the mice of the Munich ENU project to avoid loss of mutant animals as a consequence of prolonged suffering from severe nephropathy. The primary screen detected six confirmed phenotypic variants in 2,011 G1 animals screened for dominant mutations and no variant in 48 G3 pedigrees screened for recessive mutations. Further breeding experiments resulted in two lines showing a low phenotypic penetrance of albuminuria. The secondary albuminuria screen was carried out in mutant lines which were established in the Munich ENU project without preceding primary albuminuria analysis. Two lines showing increased plasma urea levels were chosen to clarify if severe kidney lesions are involved in the abnormal phenotype. This analysis revealed severe albuminuria in mice which are affected by a recessive mutation leading to increased plasma urea and cholesterol levels. Conclusion: Thus, the phenotypic selection of ENU-induced mutants according to the parameter proteinuria in principle demonstrates the feasibility to identify nephropathy phenotypes in ENU-mutagenized mice. Copyright (C) 2005 S. Karger AG, Basel
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