Boundary layer analysis of a Centaur standard shroud

An analytical boundary layer investigation was carried out in conjunction with an experimental wind tunnel test to determine the discharge characteristics of the Centaur shroud ascent vent system on the Titan/Centaur launch vehicle. This involved estimating the effect of the local boundary layers on the vent discharge for vehicle Mach numbers ranging from 0.8 to 1.56. The growth of the boundary layer along the vehicle was influenced by the interaction with flanges protruding into the flow and by the longitudinal corrugations in the vehicle surface. The effects of the flange and corrugations were treated by approximate techniques. In addition, boundary layer calculations were made for a 3 percent model of the launch vehicle compared with experimental results

Analytical modeling of circuit aerodynamics in the new NASA Lewis wind tunnel

Rehabilitation and extention of the capability of the altitude wind tunnel (AWT) was analyzed. The analytical modeling program involves the use of advanced axisymmetric and three dimensional viscous analyses to compute the flow through the various AWT components. Results for the analytical modeling of the high speed leg aerodynamics are presented; these include: an evaluation of the flow quality at the entrance to the test section, an investigation of the effects of test section bleed for different model blockages, and an examination of three dimensional effects in the diffuser due to reentry flow and due to the change in cross sectional shape of the exhaust scoop

Wind-US Code Physical Modeling Improvements to Complement Hypersonic Testing and Evaluation

This report gives an overview of physical modeling enhancements to the Wind-US flow solver which were made to improve the capabilities for simulation of hypersonic flows and the reliability of computations to complement hypersonic testing. The improvements include advanced turbulence models, a bypass transition model, a conjugate (or closely coupled to vehicle structure) conduction-convection heat transfer capability, and an upgraded high-speed combustion solver. A Mach 5 shock-wave boundary layer interaction problem is used to investigate the benefits of k- s and k-w based explicit algebraic stress turbulence models relative to linear two-equation models. The bypass transition model is validated using data from experiments for incompressible boundary layers and a Mach 7.9 cone flow. The conjugate heat transfer method is validated for a test case involving reacting H2-O2 rocket exhaust over cooled calorimeter panels. A dual-mode scramjet configuration is investigated using both a simplified 1-step kinetics mechanism and an 8-step mechanism. Additionally, variations in the turbulent Prandtl and Schmidt numbers are considered for this scramjet configuration

Molecular Population Structure for Feral Swine in the United States

Feral swine (Sus scrofa) have invaded most of the United States and continue to expand throughout North America. Given the ecological and economic threats posed by increasing feral swine abundance, it is imperative to develop an understanding of their patterns of natural range expansion and human-mediated introductions. Towards this goal, we used molecular markers to elucidate the genetic structure of feral swine populations throughout the United States and evaluated the association between historical introductions and contemporary patterns of genetic organization. We used STRUCTURE and discriminant analysis of principal components (DAPC) to delineate genetic clusters for 959 individuals genotyped at 88 single nucleotide polymorphism loci. We identified 10 and 12 genetic clusters for the 2 clustering approaches, respectively. We observed strong agreement in clusters across approaches, with both describing clusters having strong geographic association at regional levels reflecting past introduction and range expansion patterns. In addition, we evaluated patterns of isolation by distance to test for and estimate spatial scaling of population structure within western, central, and eastern regions of North America. We found contrasting spatial patterns of genetic relatedness among regions, suggesting differences in the invasion process, likely as a result of regional variation in landscape heterogeneity and the influence of human mediated introductions. Our results indicate that molecular analyses of population genetic structure can provide reliable insights into the invasion processes of feral swine, thus providing a useful basis for management focused on minimizing continued range expansion by this problematic species

Scalable Cross-lingual Document Similarity through Language-specific Concept Hierarchies

With the ongoing growth in number of digital articles in a wider set of languages and the expanding use of different languages, we need annotation methods that enable browsing multi-lingual corpora. Multilingual probabilistic topic models have recently emerged as a group of semi-supervised machine learning models that can be used to perform thematic explorations on collections of texts in multiple languages. However, these approaches require theme-aligned training data to create a language-independent space. This constraint limits the amount of scenarios that this technique can offer solutions to train and makes it difficult to scale up to situations where a huge collection of multi-lingual documents are required during the training phase. This paper presents an unsupervised document similarity algorithm that does not require parallel or comparable corpora, or any other type of translation resource. The algorithm annotates topics automatically created from documents in a single language with cross-lingual labels and describes documents by hierarchies of multi-lingual concepts from independently-trained models. Experiments performed on the English, Spanish and French editions of JCR-Acquis corpora reveal promising results on classifying and sorting documents by similar content.Comment: Accepted at the 10th International Conference on Knowledge Capture (K-CAP 2019

Genome-wide Linkage Scan to Identify Loci for Age at First Cigarette in Dutch Sibling Pairs

Most smokers begin smoking during adolescence and early age of smoking initiation is related to more frequent current smoking, daily smoking and more dependent smoking (Everret et al., 1999; Lando et al.

Validity of a new automated software program for visceral adipose tissue estimation

Introduction: Given the considerable time and research cost of analyzing biomedical images to quantify adipose tissue volumes, automated image analysis methods are highly desirable. Hippo Fatt is a new software program designed to automatically quantify adipose tissue areas from magnetic resonance images without user inputs. Hippo Fatt has yet to be independently validated against commonly used image analysis software programs. Objective: Our aim was to compare estimates of VAT (visceral adipose tissue) and SAT (subcutaneous adipose tissue) using the new Hippo Fatt software against those from a widely used, validated, computer-assisted manual method (slice-O-matic version 4.2, Tomovision, Montreal, CA, USA) to assess its potential utility for large-scale studies. Methods: A Siemens Magnetom Vision 1.5-T whole-body scanner and a T1-weighted fast-spin echo pulse sequence were used to collect multiple, contiguous axial images of the abdomen from a sample of 40 healthy adults (20 men) aged 18-77 years of age, with mean body mass index of 29 kg/m 2 (range ¼ 19-43 kg/m 2 ). Results: Hippo Fatt provided estimates of VAT and SAT that were highly correlated with estimates using slice-O-matic (R 2 40.9). Average VAT was 9.4% lower and average SAT was 3.7% higher using Hippo Fatt compared to slice-O-matic; the overestimation of SAT tended to be greater among individuals with greater adiposity. Individual-level differences for VAT were also substantial; Hippo Fatt gave estimates of VAT ranging from 1184 cm 3 less to 566 cm 3 more than estimates for the same person using slice-O-matic. Conclusion: Hippo Fatt provides a rapid method of quantifying total VAT, although the method does not provide estimates that are interchangeable with slice-O-matic at either the group (mean) or individual level

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY challenge

Background: There is tremendous potential for genome sequencing to improve clinical diagnosis and care once it becomes routinely accessible, but this will require formalizing research methods into clinical best practices in the areas of sequence data generation, analysis, interpretation and reporting. The CLARITY Challenge was designed to spur convergence in methods for diagnosing genetic disease starting from clinical case history and genome sequencing data. DNA samples were obtained from three families with heritable genetic disorders and genomic sequence data were donated by sequencing platform vendors. The challenge was to analyze and interpret these data with the goals of identifying disease-causing variants and reporting the findings in a clinically useful format. Participating contestant groups were solicited broadly, and an independent panel of judges evaluated their performance. Results: A total of 30 international groups were engaged. The entries reveal a general convergence of practices on most elements of the analysis and interpretation process. However, even given this commonality of approach, only two groups identified the consensus candidate variants in all disease cases, demonstrating a need for consistent fine-tuning of the generally accepted methods. There was greater diversity of the final clinical report content and in the patient consenting process, demonstrating that these areas require additional exploration and standardization. Conclusions: The CLARITY Challenge provides a comprehensive assessment of current practices for using genome sequencing to diagnose and report genetic diseases. There is remarkable convergence in bioinformatic techniques, but medical interpretation and reporting are areas that require further development by many groups

Collective Effects in the NSLS-II Storage Ring.

A new high-brightness synchrotron light source (NSLS-II) is under design at BNL. The 3-GeV NSLS-II storage ring has a double-bend achromatic lattice with damping wigglers installed in zero-dispersion straights to reduce the emittance below 1nm. In this paper, we present an overview of the impact of collective effects upon the performance of the storage ring. Subjects discussed include instability thresholds, Touschek lifetime and intra-beam scattering