Lazarus ecology: Recovering the distribution and migratory patterns of the extinct Carolina parakeet.

The study of the ecology and natural history of species has traditionally ceased when a species goes extinct, despite the benefit to current and future generations of potential findings. We used the extinct Carolina parakeet as a case study to develop a framework investigating the distributional limits, subspecific variation, and migratory habits of this species as a means to recover important information about recently extinct species. We united historical accounts with museum collections to develop an exhaustive, comprehensive database of every known occurrence of this once iconic species. With these data, we combined species distribution models and ordinal niche comparisons to confront multiple conjectured hypotheses about the parakeet's ecology with empirical data on where and when this species occurred. Our results demonstrate that the Carolina parakeet's range was likely much smaller than previously believed, that the eastern and western subspecies occupied different climatic niches with broad geographical separation, and that the western subspecies was likely a seasonal migrant while the eastern subspecies was not. This study highlights the novelty and importance of collecting occurrence data from published observations on extinct species, providing a starting point for future investigations of the factors that drove the Carolina parakeet to extinction. Moreover, the recovery of lost autecological knowledge could benefit the conservation of other parrot species currently in decline and would be crucial to the success of potential de-extinction efforts for the Carolina parakeet

Disparity in the timing of vertebrate diversification events between the northern and southern hemispheres.

ABSTRACT: BACKGROUND: Climatic oscillations throughout the Quaternary had profound effects on temperate biodiversity, but the extent of Quaternary climate change was more severe in temperate regions of the northern hemisphere than in the southern hemisphere. We sought to determine whether this geographic disparity differentially influenced the timing of intraspecific diversification events within ectothermic and endothermic vertebrate species. Using published phylogenetic hypotheses, we gathered data on the oldest intraspecific diversification event within mammal, bird, freshwater fish, amphibian, and reptile species from temperate-zone areas. We then tested whether the timing of diversification events differed between hemispheres. RESULTS: Our analyses provide strong evidence that vertebrates from temperate regions of the northern hemisphere are younger than those from the southern hemisphere. However, we find little evidence to suggest that this relationship differs between endotherms versus ectotherms, or that it varies widely across the five classes of vertebrates that we considered. In addition, we find that on average, endothermic species are much younger than ectothermic species. CONCLUSION: Our findings suggest that geographic variation in the magnitude of climatic oscillations during the Quaternary led to substantial disparity in the timing of intraspecific diversification events between northern and southern hemisphere vertebrates, and that the magnitude of this divergence is largely congruent across vertebrate taxa

Camera trap arrays improve detection probability of wildlife: Investigating study design considerations using an empirical dataset.

Camera trapping is a standard tool in ecological research and wildlife conservation. Study designs, particularly for small-bodied or cryptic wildlife species often attempt to boost low detection probabilities by using non-random camera placement or baited cameras, which may bias data, or incorrectly estimate detection and occupancy. We investigated the ability of non-baited, multi-camera arrays to increase detection probabilities of wildlife. Study design components were evaluated for their influence on wildlife detectability by iteratively parsing an empirical dataset (1) by different sizes of camera arrays deployed (1-10 cameras), and (2) by total season length (1-365 days). Four species from our dataset that represented a range of body sizes and differing degrees of presumed detectability based on life history traits were investigated: white-tailed deer (Odocoileus virginianus), bobcat (Lynx rufus), raccoon (Procyon lotor), and Virginia opossum (Didelphis virginiana). For all species, increasing from a single camera to a multi-camera array significantly improved detection probability across the range of season lengths and number of study sites evaluated. The use of a two camera array increased survey detection an average of 80% (range 40-128%) from the detection probability of a single camera across the four species. Species that were detected infrequently benefited most from a multiple-camera array, where the addition of up to eight cameras produced significant increases in detectability. However, for species detected at high frequencies, single cameras produced a season-long (i.e, the length of time over which cameras are deployed and actively monitored) detectability greater than 0.75. These results highlight the need for researchers to be critical about camera trap study designs based on their intended target species, as detectability for each focal species responded differently to array size and season length. We suggest that researchers a priori identify target species for which inference will be made, and then design camera trapping studies around the most difficult to detect of those species

Task-phase-specific dynamics of basal forebrain neuronal ensembles.

Cortically projecting basal forebrain neurons play a critical role in learning and attention, and their degeneration accompanies age-related impairments in cognition. Despite the impressive anatomical and cell-type complexity of this system, currently available data suggest that basal forebrain neurons lack complexity in their response fields, with activity primarily reflecting only macro-level brain states such as sleep and wake, onset of relevant stimuli and/or reward obtainment. The current study examined the spiking activity of basal forebrain neuron populations across multiple phases of a selective attention task, addressing, in particular, the issue of complexity in ensemble firing patterns across time. Clustering techniques applied to the full population revealed a large number of distinct categories of task-phase-specific activity patterns. Unique population firing-rate vectors defined each task phase and most categories of task-phase-specific firing had counterparts with opposing firing patterns. An analogous set of task-phase-specific firing patterns was also observed in a population of posterior parietal cortex neurons. Thus, consistent with the known anatomical complexity, basal forebrain population dynamics are capable of differentially modulating their cortical targets according to the unique sets of environmental stimuli, motor requirements, and cognitive processes associated with different task phases

Stellar proper motion and the timing of planetary transits

Duration and period of transits in extrasolar planetary systems can exhibit long-term variations for a variety of reasons. Here we investigate how systemic proper motion, which steadily re-orients planetary orbit with respect to our line of sight, affects the timing of transits. We find that in a typical system with a period of several days proper motion at the level of 100 mas/yr makes transit duration vary at a rate ~10-100 ms/yr. In some isolated systems this variation is at the measurable level (can be as high as 0.6 s/yr for GJ436) and may exceed all other transit timing contributions (due to the general relativity, stellar quadrupole, etc.). In addition, proper motion causes evolution of the observed orbital period via the Shklovskii effect at a rate $\gtrsim 10$ $\mu$s/yr for the nearby transiting systems (0.26 ms/yr in GJ436), which in some cases exceeds all other contributions to $\dot P$. Earth's motion around the Sun gives rise to additional periodic timing signal (even for systems with zero intrinsic proper motion) allowing a full determination of the spatial orientation of the planetary orbit. Unlike most other timing effects the proper motion signatures persist even in systems with zero eccentricity and get stronger as the planetary period increases. They should be the dominant cause of transit timing variations in isolated wide separation (periods of months) systems that will be sought by Kepler.Comment: 7 pages, 2 tables, submitted to Ap

Lupus-TR-3b: A Low-Mass Transiting Hot Jupiter in the Galactic Plane?

We present a strong case for a transiting Hot Jupiter planet identified during a single-field transit survey towards the Lupus Galactic plane. The object, Lupus-TR-3b, transits a V=17.4 K1V host star every 3.91405d. Spectroscopy and stellar colors indicate a host star with effective temperature 5000 +/- 150K, with a stellar mass and radius of 0.87 +/- 0.04M_sun and 0.82 +/- 0.05R_sun, respectively. Limb-darkened transit fitting yields a companion radius of 0.89 +/- 0.07R_J and an orbital inclination of 88.3 +1.3/-0.8 deg. Magellan 6.5m MIKE radial velocity measurements reveal a 2.4 sigma K=114 +/- 25m/s sinusoidal variation in phase with the transit ephemeris. The resulting mass is 0.81 +/- 0.18M_J and density 1.4 +/- 0.4g/cm^3. Y-band PANIC image deconvolution reveal a V>=21 red neighbor 0.4'' away which, although highly unlikely, we cannot conclusively rule out as a blended binary with current data. However, blend simulations show that only the most unusual binary system can reproduce our observations. This object is very likely a planet, detected from a highly efficient observational strategy. Lupus-TR-3b constitutes the faintest ground-based detection to date, and one of the lowest mass Hot Jupiters known.Comment: 4 pages, 4 figures, accepted for publication in ApJ

Confirmation of an exoplanet using the transit color signature: Kepler-418b, a blended giant planet in a multiplanet system

We announce confirmation of Kepler-418b, one of two proposed planets in this system. This is the first confirmation of an exoplanet based primarily on the transit color signature technique. We used the Kepler public data archive combined with multicolor photometry from the Gran Telescopio de Canarias and radial velocity follow-up using FIES at the Nordic Optical Telescope for confirmation. We report a confident detection of a transit color signature that can only be explained by a compact occulting body, entirely ruling out a contaminating eclipsing binary, a hierarchical triple, or a grazing eclipsing binary. Those findings are corroborated by our radial velocity measurements, which put an upper limit of ~1 Mjup on the mass of Kepler-418b. We also report that the host star is significantly blended, confirming the ~10% light contamination suspected from the crowding metric in the Kepler light curve measured by the Kepler team. We report detection of an unresolved light source that contributes an additional ~40% to the target star, which would not have been detected without multicolor photometric analysis. The resulting planet-star radius ratio is 0.110 +/- 0.0025, more than 25% more than the 0.087 measured by Kepler, leading to a radius of 1.20 +/- 0.16 Rjup instead of the 0.94 Rjup measured by the Kepler team. This is the first confirmation of an exoplanet candidate based primarily on the transit color signature, demonstrating that this technique is viable from ground for giant planets. It is particularly useful for planets with long periods such as Kepler-418b, which tend to have long transit durations. Additionally, multicolor photometric analysis of transits can reveal unknown stellar neighbors and binary companions that do not affect the classification of the transiting object but can have a very significant effect on the perceived planetary radius.Comment: accepted by Astronomy & Astrophysic

Detection of transit timing variations in excess of one hour in the Kepler multi-planet candidate system KOI 806 with the GTC

We report the detection of transit timing variations (TTVs) well in excess of one hour in the Kepler multi-planet candidate system KOI 806. This system exhibits transits consistent with three separate planets -- a Super-Earth, a Jupiter, and a Saturn -- lying very nearly in a 1:2:5 resonance, respectively. We used the Kepler public data archive and observations with the Gran Telescopio de Canarias to compile the necessary photometry. For the largest candidate planet (KOI 806.02) in this system, we detected a large transit timing variation of -103.5$\pm$6.9 minutes against previously published ephemeris. We did not obtain a strong detection of a transit color signature consistent with a planet-sized object; however, we did not detect a color difference in transit depth, either. The large TTV is consistent with theoretical predictions that exoplanets in resonance can produce large transit timing variations, particularly if the orbits are eccentric. The presence of large TTVs among the bodies in this systems indicates that KOI806 is very likely to be a planetary system. This is supported by the lack of a strong color dependence in the transit depth, which would suggest a blended eclipsing binary.Comment: 9 pages, 4 figures, accepted into A&A Letter