Enhanced direct fermentation of cassava to butanol by Clostridium species strain BOH3 in cofactor-mediated medium

10.1186/s13068-015-0351-7Biotechnology for Biofuels8116

Multifocus Image Fusion in Q-Shift DTCWT Domain Using Various Fusion Rules

Multifocus image fusion is a process that integrates partially focused image sequence into a fused image which is focused everywhere, with multiple methods proposed in the past decades. The Dual Tree Complex Wavelet Transform (DTCWT) is one of the most precise ones eliminating two main defects caused by the Discrete Wavelet Transform (DWT). Q-shift DTCWT was proposed afterwards to simplify the construction of filters in DTCWT, producing better fusion effects. A different image fusion strategy based on Q-shift DTCWT is presented in this work. According to the strategy, firstly, each image is decomposed into low and high frequency coefficients, which are, respectively, fused by using different rules, and then various fusion rules are innovatively combined in Q-shift DTCWT, such as the Neighborhood Variant Maximum Selectivity (NVMS) and the Sum Modified Laplacian (SML). Finally, the fused coefficients could be well extracted from the source images and reconstructed to produce one fully focused image. This strategy is verified visually and quantitatively with several existing fusion methods based on a plenty of experiments and yields good results both on standard images and on microscopic images. Hence, we can draw the conclusion that the rule of NVMS is better than others after Q-shift DTCWT

Effect of Pathogenic Fungal Infestation on the Berry Quality and Volatile Organic Compounds of Cabernet Sauvignon and Petit Manseng Grapes

The effect of pathogenic fungal infestation on berry quality and volatile organic compounds (VOCs) of Cabernet Sauvignon (CS) and Petit Manseng (PM) were investigated by using biochemical assays and gas chromatography-ion mobility spectrometry. No significant difference in diseases-affected grapes for 100-berry weight. The content of tannins and vitamin C decreased significantly in disease-affected grapes, mostly in white rot-affected PM, which decreased by 71.67% and 66.29%. The reduced total flavonoid content in diseases-affected grape, among which the least and most were anthracnose-affected PM (1.61%) and white rot-affected CS (44.74%). All diseases-affected CS had much higher titratable acid, a maximum (18.86 g/100 ml) was observed in the gray mold-affected grapes, while only anthracnose-affected grapes with a higher titratable acid level (21.8 g/100 mL) were observed in PM. A total of 61 VOCs were identified, including 14 alcohols, 13 esters, 12 aldehydes, 4 acids, 4 ketones, 1 ether, and 13 unknown compounds, which were discussed from different functional groups, such as C6-VOCs, alcohols, ester acetates, aldehydes, and acids. The VOCs of CS changed more than that of Petit Manseng’s after infection, while gray mold-affected Cabernet Sauvignon had the most change. C6-VOCs, including hexanal and (E)-2-hexenal were decreased in all affected grapes. Some unique VOCs may serve as hypothetical biomarkers to help us identify specific varieties of pathogenic fungal infestation

Factors affecting performance and functional stratification of membrane-aerated biofilms with a counter-diffusion configuration

Membrane-aerated biofilms (MABs) developed with a novel counter-diffusion configuration in oxygen and substrate supply were examined for the effect of biofilm thickness on the functional activity and microbial community structure of the biofilm with the simultaneous degradation of acetonitrile, and nitrification and denitrification. Results demonstrated that different biofilm thicknesses under different surface loading rates (SLRs) caused substantially varied profiles of the microbial activities with distinct functions in the biofilm. Both thick and thin MABs achieved high-rate performance in terms of acetonitrile removal (>99%), but the performance differed in the removal efficiencies of total nitrogen (TN), which was 1.3 times higher in the thick MAB (85%) than in the thin MAB (36.3%). The specific ammonia-oxidizing rate (SAOR) and the specific acetonitrile-degrading rate (SADR) exhibited similar declining and ascending trends in both the thin and thick MABs, respectively. In contrast, the specific denitrifying rate (SDNR) was relatively uniform at a concentration near the detection limit in the thin MAB but exhibited a hump-shaped variation with the highest rate occurring in an intermediate region in the thick MAB. Microbial community analysis revealed a dramatic shift in the dominant bacteria of the community composition with low diversity across the biofilm. This study suggests that the biofilm thickness developed under SLRs, which controls the mass transfer of oxygen and substrates into biofilms, is an important factor affecting the structural and functional stratification of bacterial populations in a single MAB treating organonitrile wastewater

Factors affecting performance and functional stratification of membrane-aerated biofilms with a counter-diffusion configuration

Membrane-aerated biofilms (MABs) developed with a novel counter-diffusion configuration in oxygen and substrate supply were examined for the effect of biofilm thickness on the functional activity and microbial community structure of the biofilm with the simultaneous degradation of acetonitrile, and nitrification and denitrification. Results demonstrated that different biofilm thicknesses under different surface loading rates (SLRs) caused substantially varied profiles of the microbial activities with distinct functions in the biofilm. Both thick and thin MABs achieved high-rate performance in terms of acetonitrile removal (>99%), but the performance differed in the removal efficiencies of total nitrogen (TN), which was 1.3 times higher in the thick MAB (85%) than in the thin MAB (36.3%). The specific ammonia-oxidizing rate (SAOR) and the specific acetonitrile-degrading rate (SADR) exhibited similar declining and ascending trends in both the thin and thick MABs, respectively. In contrast, the specific denitrifying rate (SDNR) was relatively uniform at a concentration near the detection limit in the thin MAB but exhibited a hump-shaped variation with the highest rate occurring in an intermediate region in the thick MAB. Microbial community analysis revealed a dramatic shift in the dominant bacteria of the community composition with low diversity across the biofilm. This study suggests that the biofilm thickness developed under SLRs, which controls the mass transfer of oxygen and substrates into biofilms, is an important factor affecting the structural and functional stratification of bacterial populations in a single MAB treating organonitrile wastewater

Characterization and genome analysis of a butanol–isopropanol-producing Clostridium beijerinckii strain BGS1

Abstract Background One of the main challenges of acetone–butanol–ethanol fermentation is to reduce acetone production with high butanol yield. Converting acetone into isopropanol is an alternative pathway to reduce fermentation by-products in the fermentation broth. Here, we aimed to cultivate a wild-type Clostridium strain with high isopropanol and butanol production and reveal its genome information. Results Clostridium beijerinckii strain BGS1 was found to be capable of producing 10.21 g/L butanol and 3.41 g/L isopropanol, higher than previously known wild-type isopropanol–butanol-producing Clostridium species. Moreover, culture BGS1 exhibited a broad carbon spectrum utilizing diverse sugars such as arabinose, xylose, galactose, cellobiose, and sucrose, with 9.61 g/L butanol and 2.57 g/L isopropanol generated from 60 g/L sucrose and less amount from other sugars. Based on genome analysis, protein-based sequence of strain BGS1 was closer to C. beijerinckii NCIMB 8052, reaching 90.82% similarity, while compared to C. beijerinckii DSM 6423, the similarity was 89.53%. In addition, a unique secondary alcohol dehydrogenase (sAdhE) was revealed in the genome of strain BGS1, which distinguished it from other Clostridium species. Average nucleotide identity analysis identified strain BGS1 belonging to C. beijerinckii. The transcription profile and enzymatic activity of sAdhE proved its function of converting acetone into isopropanol. Conclusions Clostridium beijerinckii strain BGS1 is a potential candidate for industrial isopropanol and butanol production. Its genome provides unique information for genetic engineering of isopropanol–butanol-producing microorganisms

Conversion of Waste Cooking Oil to Rhamnolipid by a Newly Oleophylic Pseudomonas aeruginosa WO2

The components of waste cooking oil (WCO) are complex and contain toxic substances, which are difficult to treat biologically. Pseudomonas aeruginosa WO2 was isolated from oily sludge by an anaerobic enrichment–aerobic screening method, which could efficiently utilize WCO and produce rhamnolipid. The effects of nutrients and culture conditions on bacterial growth and lipase activity were investigated to optimize the fermentation of WCO. The results showed that strain WO2 utilized 92.25% of WCO and produced 3.03 g/L of rhamnolipid at 120 h. Compared with inorganic sources, the organic nitrogen source stabilized the pH of fermentation medium, improved lipase activity (up to 19.98 U/mL), and promoted the utilization of WCO. Furthermore, the WO2 strain exhibited inferior utilization ability of the soluble starch contained in food waste, but superior salt stress up to 60 g/L. These unique characteristics demonstrate the potential of Pseudomonas aeruginosa WO2 for the utilization of high-salinity oily organic waste or wastewater

Phosphate functionalized iron based nanomaterials coupled with phosphate solubilizing bacteria as an efficient remediation system to enhance lead passivation in soil

Bioremediation technology has attracted increasing interest due to it efficient, economical and eco-friendly to apply to heavy metal contaminated soil. This study presents a new biological remediation system with phosphate functionalized iron-based nanomaterials and phosphate solubilizing bacterium strain Leclercia adecarboxylata. Different phosphate content functionalized iron-based nanomaterials were prepared, and nZVI@C/P1 (nP: nFe: nC=1:10:200) with high passivation efficiency was selected to combine with PSB for the remediation experiments. The change in lead fraction and microbial community under five conditions (CK, PSB, nZVI@C, nZVI@C/ P1, nZVI@C/P1 + PSB) during 10 days incubation were investigate. The results indicated that nZVI@C/P1 + PSB increased the residual fraction of lead by 93.94% compared with the control group. Meanwhile, inoculation of Leclercia adecarboxylata became the dominant microflora in the soil microbial community during the remediation time, improving the utilization rate of phosphate in nZVI@C/P1 and enhancing the passivation efficiency of lead. Experimental findings demonstrated that combining nZVI@C/P1 with PSB could be considered as an efficient strategy for the lead contaminated soil remediation

VaCRK2 Mediates Gray Mold Resistance in Vitis amurensis by Activating the Jasmonate Signaling Pathway

Cysteine-rich receptor-like kinases (CRKs) are ubiquitous plant receptor-like kinases, which play a significant role in plant disease resistance. Gray mold is an economically important disease of grapes caused by Botrytis cinerea. However, CRK genes and their function in gray mold disease resistance in grapes have not been elucidated. This study aimed to identify and characterize CRKs in grapes and determine their role in gray mold resistance. Four CRKs were identified in Vitis amurensis and named VaCRK1–VaCRK4 according to their genomic distribution. The four VaCRKs were ectopically expressed in Arabidopsis thaliana to study their function in defense response against B. cinerea. Heterologous expression of VaCRK2 in A. thaliana conferred resistance to B. cinerea. VaCRK2 expression in gray mold-resistant grape cultivar increased significantly after B. cinerea inoculation and methyl jasmonate treatment. Furthermore, the expression of jasmonic acid (JA) signaling pathway-related genes in VaCRK2 overexpression lines of A. thaliana was significantly increased after B. cinerea inoculation, leading to the upregulation of pathogenesis-related (PR) genes and reactive oxygen species (ROS) accumulation. Overall, these results suggest that VaCRK2 confers resistance to B. cinerea by activating PR gene expression and oxidative burst through the JA signaling pathway