Long‐Term Effects of Tree Expansion and Reduction on Soil Climate in a Semiarid Ecosystem

In sagebrush ecosystems, pinyon and juniper tree expansion reduces water available to perennial shrubs and herbs. We measured soil water matric potential and temperatures at 13–30 and 50–65 cm soil depths in untreated and treated plots across a range of environmental conditions. We sought to determine the effects of tree expansion, tree reduction treatments, and expansion phase at time of treatment over 12–13 yr post‐treatment. Because the effects of tree reduction on vegetation can vary with the soil temperature/moisture regime, we also analyzed differences in soil climate variables between the mesic/aridic‐xeric and frigid/xeric regime classifications for our sites. Growing conditions during all seasons except spring were greatly limited by lack of available water, low temperatures, or both. Advanced tree expansion reduced wet days (total hours per 24 hr when hourly average soil water matric potential \u3e−1.5 MPa), especially in early spring. Fire and mechanical tree reduction increased wet days and wet degree days (sum of hourly soil temperatures \u3e0°C when soil is wet per 24 hr) compared with no treatment for most seasons. Burning resulted in higher soil temperatures than untreated or mechanically treated woodlands. Tree reduction at advanced expansion phases increased wet days in spring more than when implemented at earlier phases of expansion. Added wet days from tree reduction were negatively associated with October through June precipitation and vegetation cover, rather than time since treatment, with more wet days added on drier sites and years. The longer period of water availability in spring supports increased growth and cover of not only shrubs and perennial herbs, but also invasive weeds on warmer and drier sites, for many years after tree reduction. We found that sites classified as mesic/aridic‐xeric had warmer soil temperatures all seasons and were drier in spring and winter than sites classified as frigid/xeric. Land managers should consider reducing trees at earlier phases of expansion or consider revegetation when treating at advanced phases on these warmer and drier sites that lack perennial herb potential

Response of Conifer-Encroached Shrublands in the Great Basin to Prescribed Fire and Mechanical Treatments

In response to the recent expansion of piñon and juniper woodlands into sagebrush-steppe communities in the northern Great Basin region, numerous conifer-removal projects have been implemented, primarily to release understory vegetation at sites having a wide range of environmental conditions. Responses to these treatments have varied from successful restoration of native plant communities to complete conversion to nonnative invasive species. To evaluate the general response of understory vegetation to tree canopy removal in conifer-encroached shrublands, we set up a region-wide study that measured treatment-induced changes in understory cover and density. Eleven study sites located across four states in the Great Basin were established as statistical replicate blocks, each containing fire, mechanical, and control treatments. Different cover groups were measured prior to and during the first 3 yr following treatment. There was a general pattern of response across the wide range of site conditions. There was an immediate increase in bare ground and decrease in tall perennial grasses following the fire treatment, but both recovered by the second or third growing season after treatment. Tall perennial grass cover increased in the mechanical treatment in the second and third year, and in the fire treatment cover was higher than the control by year 3. Nonnative grass and forb cover did not increase in the fire and mechanical treatments in the first year but increased in the second and third years. Perennial forb cover increased in both the fire and mechanical treatments. The recovery of herbaceous cover groups was from increased growth of residual vegetation, not density. Sagebrush declined in the fire treatment, but seedling density increased in both treatments. Biological soil crust declined in the fire treatment, with no indications of recovery. Differences in plant response that occurred between mechanical and fire treatments should be considered when selecting management options

Developing a Model Framework for Predicting Effects of Woody Expansion and Fire on Ecosystem Carbon and Nitrogen in a Pinyon-Juniper Woodland

Sagebrush-steppe ecosystems are one of the most threatened ecosystems in North America due to woodland expansion, wildfire, and exotic annual grass invasion. Some scientists and policy makers have suggested that woodland expansion will lead to increased carbon (C) storage on the landscape. To assess this potential we used data collected from a Joint Fire Sciences Program demonstration area to develop a Microsoft Excel™ based biomass, carbon, and nitrogen (N) spreadsheet model. The model uses input for tree cover, soil chemistry, soil physical properties, and vegetation chemistry to estimate biomass, carbon, and nitrogen accumulation on the landscape with woodland expansion. The model also estimates C and N losses associated with prescribed burning. On our study plots we estimate in treeless sagebrush-steppe ecosystems, biomass accounts for 4.5 Mg ha−1 C and 0.3 Mg ha−1 N this is \u3c10% of total estimated ecosystem C and N to a soil depth of 53 cm, but as tree cover increases to near closed canopy conditions aboveground biomass may account for 62 Mg ha−1 C and 0.6 Mg ha−1 N which is nearly 53% of total estimated ecosystem C and 13% of total estimated ecosystem N to a soil depth of 53 cm. Prescribed burning removes aboveground biomass, C and N, but may increase soil C at areal tree cover below 26%. The model serves as a tool by which we are able to assess our understanding of the system and identify knowledge gaps which exist for this ecosystem. We believe that further work is necessary to quantify herbaceous biomass, root biomass, woody debris decomposition, and soil C and N with woodland expansion and prescribed fire. It will also be necessary to appropriately scale these estimates from the plot to the landscape

Resilience and Resistance of Sagebrush Ecosystems: Implications for State and Transition Models and Management Treatments

In sagebrush ecosystems invasion of annual exotics and expansion of piñon (Pinus monophylla Torr. and Frem.) and juniper (Juniperus occidentalis Hook., J. osteosperma [Torr.] Little) are altering fire regimes and resulting in large-scale ecosystem transformations. Management treatments aim to increase resilience to disturbance and enhance resistance to invasive species by reducing woody fuels and increasing native perennial herbaceous species. We used Sagebrush Steppe Treatment Evaluation Project data to test predictions on effects of fire vs. mechanical treatments on resilience and resistance for three site types exhibiting cheatgrass (Bromus tectorum L.) invasion and/or piñon and juniper expansion: 1) warm and dry Wyoming big sagebrush (WY shrub); 2) warm and moist Wyoming big sagebrush (WY PJ); and 3) cool and moist mountain big sagebrush (Mtn PJ). Warm and dry (mesic/aridic) WY shrub sites had lower resilience to fire (less shrub recruitment and native perennial herbaceous response) than cooler and moister (frigid/xeric) WY PJ and Mtn PJ sites. Warm (mesic) WY Shrub and WY PJ sites had lower resistance to annual exotics than cool (frigid to cool frigid) Mtn PJ sites. In WY shrub, fire and sagebrush mowing had similar effects on shrub cover and, thus, on perennial native herbaceous and exotic cover. In WY PJ and Mtn PJ, effects were greater for fire than cut-and-leave treatments and with high tree cover in general because most woody vegetation was removed increasing resources for other functional groups. In WY shrub, about 20% pretreatment perennial native herb cover was necessary to prevent increases in exotics after treatment. Cooler and moister WY PJ and especially Mtn PJ were more resistant to annual exotics, but perennial native herb cover was still required for site recovery. We use our results to develop state and transition models that illustrate how resilience and resistance influence vegetation dynamics and management options

Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

Metagenomics-based high-throughput sequencing (HTS) enables comprehensive detection of all species comprised in a sample with a single assay and is becoming a standard method for outbreak investigation. However, unlike real-time PCR or serological assays, HTS datasets generated for pathogen detection do not easily provide yes/no answers. Rather, results of the taxonomic read assignment need to be assessed by trained personnel to gain information thereof. Proficiency tests are important instruments of validation, harmonization, and standardization. Within the European Union funded project COMPARE [COllaborative Management Platform for detection and Analyses of (Re-) emerging and foodborne outbreaks in Europe], we conducted a proficiency test to scrutinize the ability to assess diagnostic metagenomics data. An artificial dataset resembling shotgun sequencing of RNA from a sample of contaminated trout was provided to 12 participants with the request to provide a table with per-read taxonomic assignments at species level and a report with a summary and assessment of their findings, considering different categories like pathogen, background, or contaminations. Analysis of the read assignment tables showed that the software used reliably classified the reads taxonomically overall. However, usage of incomplete reference databases or inappropriate data pre-processing caused difficulties. From the combination of the participants\u2019 reports with their read assignments, we conclude that, although most species were detected, a number of important taxa were not or not correctly categorized. This implies that knowledge of and awareness for potentially dangerous species and contaminations need to be improved, hence, capacity building for the interpretation of diagnostic metagenomics datasets is necessary

Neighbourhood identity helps residents cope with residential diversification: contact in increasingly mixed neighbourhoods of Northern Ireland

Research on residential diversification has mainly focused on its negative impacts upon community cohesion and positive effects on intergroup relations. However, these analyses ignore how neighbourhood identity can shape the consequences of diversification among residents. Elsewhere, research using the Applied Social Identity Approach (ASIA) has demonstrated the potential for neighbourhood identity to provide social and psychological resources to cope with challenges. The current paper proposes a novel model whereby these ‘Social Cure’ processes can enable residents to cope with the specific challenges of diversification. We present two studies in support of this model, each from the increasingly religiously desegregated society of post-conflict Northern Ireland. Analysis of the 2012 ‘Northern Ireland Life and Times’ survey shows that across Northern Ireland, neighbourhood identity impacts positively upon both wellbeing and intergroup attitudes via a reduction in intergroup anxiety. A second custom-designed survey of residents in a newly-mixed area of Belfast shows that neighbourhood identification predicts increased wellbeing, reduced intergroup anxiety and reduced prejudice, independently of group norms and experiences of contact. For political psychologists, our evidence suggests a reformulation of the fundamental question of ‘what effects does residential mixing have on neighbourhoods?’ to ‘how can neighbourhood communities support residents to collectively cope with contact?’

Worker remittances and the global preconditions of ‘smart development’

With the growing environmental crisis affecting our globe, ideas to weigh economic or social progress by the ‘energy input’ necessary to achieve it are increasingly gaining acceptance. This question is intriguing and is being dealt with by a growing number of studies, focusing on the environmental price of human progress. Even more intriguing, however, is the question of which factors of social organization contribute to a responsible use of the resources of our planet to achieve a given social result (‘smart development’). In this essay, we present the first systematic study on how migration – or rather, more concretely, received worker remittances per GDP – helps the nations of our globe to enjoy social and economic progress at a relatively small environmental price. We look at the effects of migration on the balance sheets of societal accounting, based on the ‘ecological price’ of the combined performance of democracy, economic growth, gender equality, human development, research and development, and social cohesion. Feminism in power, economic freedom, population density, the UNDP education index as well as the receipt of worker remittances all significantly contribute towards a ‘smart overall development’, while high military expenditures and a high world economic openness are a bottleneck for ‘smart overall development’

Molecular map of chronic lymphocytic leukemia and its impact on outcome

Recent advances in cancer characterization have consistently revealed marked heterogeneity, impeding the completion of integrated molecular and clinical maps for each malignancy. Here, we focus on chronic lymphocytic leukemia (CLL), a B cell neoplasm with variable natural history that is conventionally categorized into two subtypes distinguished by extent of somatic mutations in the heavy-chain variable region of immunoglobulin genes (IGHV). To build the ‘CLL map,’ we integrated genomic, transcriptomic and epigenomic data from 1,148 patients. We identified 202 candidate genetic drivers of CLL (109 new) and refined the characterization of IGHV subtypes, which revealed distinct genomic landscapes and leukemogenic trajectories. Discovery of new gene expression subtypes further subcategorized this neoplasm and proved to be independent prognostic factors. Clinical outcomes were associated with a combination of genetic, epigenetic and gene expression features, further advancing our prognostic paradigm. Overall, this work reveals fresh insights into CLL oncogenesis and prognostication

Resilience and Resistance in Sagebrush Ecosystems Are Associated With Seasonal Soil Temperature and Water Availability

Invasion and dominance of exotic grasses and increased fire frequency threaten native ecosystems worldwide. In the Great Basin region of the western United States, woody and herbaceous fuel treatments are implemented to decrease the effects of wildfire and increase sagebrush (Artemisia spp.) ecosystem resilience to disturbance and resistance to exotic annual grasses. High cover of the exotic annual cheatgrass (Bromus tectorum) after treatments increases fine fuels, which in turn increases the risk of passing over a biotic threshold to a state of increased wildfire frequency and conversion to cheatgrass dominance. Sagebrush ecosystem resilience to wildfire and resistance to cheatgrass depend on climatic conditions and abundance of perennial herbaceous species that compete with cheatgrass. In this study, we used longer‐term data to evaluate the relationships among soil climate conditions, perennial herbaceous cover, and cheatgrass cover following fuel management treatments across the environmental gradients that characterize sagebrush ecosystems in the Great Basin. We examined the effects of woody and herbaceous fuel treatments on soil temperature, soil water availability (13–30 and 50 cm depths), and native and exotic plant cover on six sagebrush sites lacking piñon (Pinus spp.) or juniper (Juniperus spp.) tree expansion and 11 sagebrush sites with tree expansion. Both prescribed fire and mechanical treatments increased soil water availability on woodland sites and perennial herbaceous cover on some woodland and sagebrush sites. Prescribed fire also slightly increased soil temperatures and especially increased cheatgrass cover compared to no treatment and mechanical treatments on most sites. Non‐metric dimensional scaling ordination and decision tree partition analysis indicated that sites with warmer late springs and warmer and wetter falls had higher cover of cheatgrass. Sites with wetter winters and early springs (March–April) had higher cover of perennial herbs. Our findings suggest that site resistance to cheatgrass after fire and fuel control treatments decreases with a warmer and drier climate. This emphasizes the need for management actions to maintain and enhance perennial herb cover, such as implementing appropriate grazing management, and revegetating sites that have low abundance of perennial herbs in conjunction with fuel control treatments