Space and habitat selection by female European wild cats (Felis silvestris silvestris)

Studies on the use of space and habitat selection of threatened species are useful for identifying factors that influence fitness of individuals and population viability. However, there is a considerable lack of published information regarding these factors for the European wildcat ( Felis silvestris ). Serra da Malcata Nature Reserve (SMNR), a mountainous area in the eastern centre of Portugal, hosts a stable wildcat population which constitutes a priority in terms of conservation. We studied space use and habitat selection of female wildcats in SMNR with the following objectives: 1) to describe seasonal space use and habitat selection and 2) to obtain information on priority habitats for wildcats in order to develop a proper conservation strategy. We used radio-telemetry as the basic tool for our study and we analysed habitat selection using an Euclidean distance-based approach to investigate seasonal and annual habitat selection by wildcats. We detected that during spring females exhibit smaller home ranges and core areas. Females exhibited habitat selection for establishing home ranges from the available habitats within the study area. In fact, females selected Quercus pyrenaica forests and Quercus rotundifolia and Arbutus unedo forests positively and avoided Erica spp. and Cistus ladanifer scrubland and other habitats. Quercus pyrenaica forests and Quercus rotundifolia and Arbutus unedo forests are important habitats for female wildcats because they provide shelter and food resources, such as small mammals. They also contain elevated tree cavities which can be use as dens. In contrast, Erica spp. and Cistus ladanifer scrubland is an extremely dense habitat with low associated biodiversity and so wildcats avoid it. We believe that this habitat, as well as pine stands, do not provide food and cover resources for wildcats. Home ranges with higher percentage of these habitat types tend to be larger, since females are required to use larger areas to meet their resource requirements. Our results emphasize the importance of the remaining autochthonous forests in wildcat conservation. Therefore, we recommend that current habitat policy for restoration and conservation should be continued and expanded in order to substantially increase the amount of natural forested land in Serra da Malcata

Free GIS for herpetologists: free data sources on Internet and comparison analysis of proprietary and free/open source software

Geographical Information Systems (GIS) have been used widely in zoology and ecology, particularly in herpetology. The use of spatially explicit analysis has increased during the last decade, with the consequent expansion of GIS application in ecology. During the last years, geo-information technology has been developed within the Free/Open Source Software (FOSS) community, resulting in new open source formats and several GIS packages. However, proprietary packages seem still to be the first choice for herpetologists, thus involving non negligible costs for GIS technology adoption. Additional costs arise from environmental data, which are usually expensive, worsening in the case of large study areas. An alternative solution is to use freely available data, despite a possible decrease of resolution. In this review, we aim to show the feasibility of spatial analysis within FOSS GIS packages, rank these packages using the number of available tools and list several data sources freely available on the Internet. We listed several websites providing the most important free data for spatial analysis, i.e. altitude and derived data; past, current and future climatic series data; and satellite derived data. We provide also a list of the most commonly used functions in GIS analysis and their availability in the six software compared in this study (ArcGIS; gvSIG; ILWIS; Quantum GIS; GRASS; and DIVA-GIS). The software gvSIG is the one with more functions (106) followed by Quantum GIS with 94 and GRASS with 84

Genealogy of the nuclear β-fibrinogen intron 7 in Lissotriton boscai (Caudata, Salamandridae): concordance with mtDNA and implications for phylogeography and speciation

The power of phylogeographic inference resides in its ability to integrate information from multiple sources in an iterative hypothesis- testing framework. In this paper, we build upon previous mtDNA-based hypotheses about the evolutionary history of the Iberian newt Lissotriton boscai using sequences of the highly variable nuclear ß-fibrinogen intron 7. In addition to the nuclear sequences, we produced new mtDNA data across the species range to delineate contact zones and test the congruence between nuclear and mitochondrial datasets at the same level of spatial organization. Through a combination of phylogenetic, phylogeographic continuous diffusion, and genetic landscape modelling analyses, we infer the evolutionary history of the species. We found notable congruence between nuclear and mtDNA datasets, which confirms deep and consistent differentiation between two major lineages that originated in the Miocene. Additionally, we found a new nuclear haplogroup with no mtDNA counterpart, roughly circumscribed to the Iberian Sistema Central mountains, and extensive areas of nuclear admixture across mtDNA lineages. We describe potential historical dispersal routes from an ancestral hypothetical refugium in the western end of the Sistema Central in central Portugal and highlight how deep phylogeographic breaks do not necessarily indicate cryptic speciation events.Peer reviewe

Genealogy of the nuclear β-fibrinogen intron 7 in Lissotriton boscai (Caudata, Salamandridae): concordance with mtDNA and implications for phylogeography and speciation

The power of phylogeographic inference resides in its ability to integrate information from multiple sources in an iterative hypothesis- testing framework. In this paper, we build upon previous mtDNA-based hypotheses about the evolutionary history of the Iberian newt Lissotriton boscai using sequences of the highly variable nuclear ß-fibrinogen intron 7. In addition to the nuclear sequences, we produced new mtDNA data across the species range to delineate contact zones and test the congruence between nuclear and mitochondrial datasets at the same level of spatial organization. Through a combination of phylogenetic, phylogeographic continuous diffusion, and genetic landscape modelling analyses, we infer the evolutionary history of the species. We found notable congruence between nuclear and mtDNA datasets, which confirms deep and consistent differentiation between two major lineages that originated in the Miocene. Additionally, we found a new nuclear haplogroup with no mtDNA counterpart, roughly circumscribed to the Iberian Sistema Central mountains, and extensive areas of nuclear admixture across mtDNA lineages. We describe potential historical dispersal routes from an ancestral hypothetical refugium in the western end of the Sistema Central in central Portugal and highlight how deep phylogeographic breaks do not necessarily indicate cryptic speciation events.Peer reviewe

Open areas associated with traditional agriculture promote functional connectivity among amphibian demes in Mediterranean agrosystems

[EN] Context: Functional connectivity across fragmented habitat patches is essential for the conservation of animal populations in humanized landscapes. Given their low dispersal capacity, amphibians in the Mediterranean region are threatened by habitat fragmentation and loss due to changes in land use, including agricultural intensification. Objectives: We assessed patterns of functional connectivity of a Near Threatened Mediterranean amphibian, the sharp ribbed newt (Pleurodeles waltl), in an agricultural landscape matrix in NW Spain subject to different intensification regimes. Methods: We sampled newts in 17 ponds embedded in a terrestrial habitat matrix dominated by agricultural land uses. Genome-wide molecular markers (1390 SNPs) were used to assess patterns of genetic diversity and gene flow among ponds. We tested the role of landscape features on functional connectivity using isolation by resistance models incorporating information on Normalized Difference Vegetation Index (NDVI) data. Results: We found low levels of genetic diversity in all sampled populations. Global FST estimates and cluster analyses revealed shallow but significant genetic structure in the study area, with NDVI-based resistance models showing that open areas (rainfed crops and grasslands) offer lower resistance to gene flow and thus promote functional connectivity among demes. Conclusions: Our study highlights the important role of landscape features, such as open areas resulting from traditional rainfed agriculture, in promoting functional connectivity between amphibian populations in Mediterranean agrosystems. Conservation policies must adopt a functional network strategy and protect groups of inter-connected temporary ponds across the traditional agricultural matrix to efficiently preserve their associated biotic communitiesPublicación en abierto financiada por el Consorcio de Bibliotecas Universitarias de Castilla y León (BUCLE), con cargo al Programa Operativo 2014ES16RFOP009 FEDER 2014-2020 DE CASTILLA Y LEÓN, Actuación:20007-CL - Apoyo Consorcio BUCL

Conservation status and Action Plan for the recovery of Iberian lynx populations in Portugal

From the first half of the 20th century onwards, the Portuguese Iberian lynx population was distributed in three major nuclei: Sado Valley, Malcata and Contenda-Barrancos. In the following decades these areas were subjected to a process that culminated in the specie’s considerable regression, probably as consequence of a major allocation of potential habitat to forestry and of prey scarcity as a result of viral diseases. The most recent survey, conducted from 2002 till 2004, revealed that the species is presently on the verge of extinction. Aware of the critical situation of the Iberian lynx in Portugal, the Institute of Nature Conservation and Biodiversity developed a Conservation Action Plan for the Iberian lynx in order to provide a consistent and effective approach to conserve the species in Portuguese territory. The on-going Action Plan is being applied in all Natura 2000 Sites, located in the lynx historical distribution that present suitable characteristics for the species potential presence or landscape features that can be optimised for lynx survival and that can be relevant for the species life-cycle. The goal of this Plan is to apply pre-release strategic reintroduction activities in order to make it possible, in the long-term, the reintroduction of Iberian lynx. Integrated in the plan, there are several ongoing conservation projects, which include habitat and prey restoration and the construction of a breeding centre that will be integrated within the overall Iberian Lynx Ex situ Conservation Programm

BioExtreme workshop, O Rosal (Galicia, España), verano 2018

La concentración de gases de efecto invernadero en la atmósfera aumenta anualmente debido, principalmente, al uso generalizado de combustibles fósiles como fuente de energía. Este incremento está detrás de una serie de cambios a nivel planetario en parámetros tan importantes como el clima (ej. cambios en el rango de temperaturas y precipitaciones globales) o los niveles de salinidad y pH de los océanos, con importantes implicaciones para la biodiversidad. Existe también un aumento en la disponibilidad de bases de datos y modelos climáticos (ej. MERRAClim, WorldClim, CHELSA, ENVIREM, CliMond, AquaMaps, Bio-ORACLE) que sirven para estimar futuros escenarios de cambio climático y escenarios del pasado reciente, como el último máximo glaciar o el Holoceno medio (ej. ecoClimate, PaleoClim, etc.). Estos modelos suelen proporcionar valores medios de temperatura (ej. temperatura media anual, temperatura media del trimestre más frío o más cálido, etc.) y valores agregados de precipitación (ej. precipitación anual, precipitación del trimestre más seco o más húmedo, etc.). Tradicionalmente, la mayoría de los estudios científicos enfocados en entender los efectos del cambio climático sobre los ecosistemas han utilizado este tipo de variables. Sin embargo, cada vez es más patente que otro tipo de parámetros del clima, como valores extremos de temperatura o precipitación, pueden afectar de manera importante a las especies y sus hábitats. El pasado verano se organizó en O Rosal (Galicia, España) (Fig.1) un workshop interdisciplinar al que acudieron especialistas en biogeografía, macroecología, herpetología, mastozoología, ecología del suelo y oceanografía con el objetivo de discutir sobre qué tipos de extremos climáticos pueden tener una mayor influencia en el funcionamiento de los ecosistemas y la distribución de los organismos. Como resultado de esta reunión se seleccionaron un conjunto de variables climáticas altamente relevantes a nivel ecológico tanto para el medio marino como para el medio terrestre, y las cuales tienen en cuenta la intensidad y duración de los eventos climáticos extremos

Magnetoliposomes based on magnetite nanoparticles

In this work, magnetic nanoparticles of magnetite were prepared by soft chemical methods, using different surfactants as templating media. These nanoparticles were either covered with a lipid bilayer, forming dry magnetoliposomes, or entrapped in liposomes - aqueous magnetoliposomes.FCT, FEDER, COMPETE/QREN/EU for financial support to CFUM (Strategic Project PEst-C/FIS/UI0607/2011) and to the research project PTDC/QUI/81238/2006 (FCOMP-01-0124-FEDER-007467)

Longitudinal sampling of external mucosae in farmed European seabass reveals the impact of water temperature on bacterial dynamics

Fish microbiota are intrinsically linked to health and fitness, but they are highly variable and influenced by both biotic and abiotic factors. Water temperature particularly limits bacterial adhesion and growth, impacting microbial diversity and bacterial infections on the skin and gills. Aquaculture is heavily affected by infectious diseases, especially in warmer months, and industry practices often promote stress and microbial dysbiosis, leading to an increased abundance of potentially pathogenic bacteria. In this regard, fish mucosa health is extremely important because it provides a primary barrier against pathogens. We used 16 rRNA V4 metataxonomics to characterize the skin and gill microbiota of the European seabass, Dicentrarchus labrax, and the surrounding water over 12 months, assessing the impact of water temperature on microbial diversity and function. We show that the microbiota of external mucosae are highly dynamic with consistent longitudinal trends in taxon diversity. Several potentially pathogenic genera (Aliivibrio, Photobacterium, Pseudomonas, and Vibrio) were highly abundant, showing complex interactions with other bacterial genera, some of which with recognized probiotic activity, and were also significantly impacted by changes in temperature. The surrounding water temperature influenced fish microbial composition, structure and function over time (days and months). Additionally, dysbiosis was more frequent in warmer months and during transitions between cold/warm months. We also detected a strong seasonal effect in the fish microbiota, which is likely to result from the compound action of several unmeasured environmental factors (e.g., pH, nutrient availability) beyond temperature. Our results highlight the importance of performing longitudinal studies to assess the impact of environmental factors on fish microbiotas