Relating magnetic reconnection to coronal heating

It is clear that the solar corona is being heated and that coronal magnetic fields undergo reconnection all the time. Here we attempt to show that these two facts are in fact related - i.e. coronal reconnection generates heat. This attempt must address the fact that topological change of field lines does not automatically generate heat. We present one case of flux emergence where we have measured the rate of coronal magnetic reconnection and the rate of energy dissipation in the corona. The ratio of these two, $P/\dot{\Phi}$, is a current comparable to the amount of current expected to flow along the boundary separating the emerged flux from the pre-existing flux overlying it. We can generalize this relation to the overall corona in quiet Sun or in active regions. Doing so yields estimates for the contribution to corona heating from magnetic reconnection. These estimated rates are comparable to the amount required to maintain the corona at its observed temperature.Comment: To appear in Phil. Trans. Royal Soc.

Calculating energy storage due to topological changes in emerging active region NOAA AR 11112

The Minimum Current Corona (MCC) model provides a way to estimate stored coronal energy using the number of field lines connecting regions of positive and negative photospheric flux. This information is quantified by the net flux connecting pairs of opposing regions in a connectivity matrix. Changes in the coronal magnetic field, due to processes such as magnetic reconnection, manifest themselves as changes in the connectivity matrix. However, the connectivity matrix will also change when flux sources emerge or submerge through the photosphere, as often happens in active regions. We have developed an algorithm to estimate the changes in flux due to emergence and submergence of magnetic flux sources. These estimated changes must be accounted for in order to quantify storage and release of magnetic energy in the corona. To perform this calculation over extended periods of time, we must additionally have a consistently labeled connectivity matrix over the entire observational time span. We have therefore developed an automated tracking algorithm to generate a consistent connectivity matrix as the photospheric source regions evolve over time. We have applied this method to NOAA Active Region 11112, which underwent a GOES M2.9 class flare around 19:00 on Oct.16th, 2010, and calculated a lower bound on the free magnetic energy buildup of ~8.25 x 10^30 ergs over 3 days.Comment: 36 pages, 14 figures. Published in 2012 ApJ, 749, 64. Published version available at http://stacks.iop.org/0004-637X/749/64 Animation available at http://solar.physics.montana.edu/tarrl/data/AR11112.mp

A Model-based Technique for Ad Hoc Correction of Instrumental Polarization in Solar Spectropolarimetry

We present a new approach for correcting instrumental polarization by modeling the non-depolarizing effects of a complex series of optical elements to determine physically realizable Mueller matrices. Provided that the Mueller matrix of the optical system can be decomposed into a general elliptical diattenuator and general elliptical retarder, it is possible to model the cross-talk between both the polarized and unpolarized states of the Stokes vector and then use the acquired science observations to determine the best-fit free parameters. Here, we implement a minimization for solar spectropolarimetric measurements containing photospheric spectral lines sensitive to the Zeeman effect using physical constraints provided by polarized line and continuum formation. This model-based approach is able to provide an accurate correction even in the presence of large amounts of polarization cross-talk and conserves the physically meaningful magnitude of the Stokes vector, a significant improvement over previous ad hoc techniques.Comment: 16 pages, 4 figures, Accepted for publication in Ap

Identification and Characterization of Novel Compounds Blocking Shiga Toxin Expression in Escherichia coli O157:H7

Infections caused by Shiga toxin-producing E. coli strains constitute a health problem, as they are problematic to treat. Shiga toxin (Stx) production is a key virulence factor associated with the pathogenicity of enterohaemorrhagic E. coli (EHEC) and can result in the development of haemolytic uremic syndrome in infected patients. The genes encoding Stx are located on temperate lysogenic phages integrated into the bacterial chromosome and expression of the toxin is generally coupled to phage induction through the SOS response. We aimed to find new compounds capable of blocking expression of Stx type 2 (Stx2) as this subtype of Stx is more strongly associated with human disease. High-throughput screening of a small-molecule library identified a lead compound that reduced Stx2 expression in a dose-dependent manner. We show that the optimised compound interferes with the SOS response by directly affecting the activity and oligomerisation of RecA, thus limiting phage activation and Stx2 expression. Our work suggests that RecA is highly susceptible to inhibition and that targeting this protein is a viable approach to limiting production of Stx2 by EHEC. This type of approach has the potential to limit production and transfer of other phage induced and transduced determinants

A Hydrodynamic Model of Alfvénic Wave Heating in a Coronal Loop and Its Chromospheric Footpoints

Alfv\'enic waves have been proposed as an important energy transport mechanism in coronal loops, capable of delivering energy to both the corona and chromosphere and giving rise to many observed features, of flaring and quiescent regions. In previous work, we established that resistive dissipation of waves (ambipolar diffusion) can drive strong chromospheric heating and evaporation, capable of producing flaring signatures. However, that model was based on a simplified assumption that the waves propagate instantly to the chromosphere, an assumption which the current work removes. Via a ray tracing method, we have implemented traveling waves in a field-aligned hydrodynamic simulation that dissipate locally as they propagate along the field line. We compare this method to and validate against the magnetohydrodynamics code Lare3D. We then examine the importance of travel times to the dynamics of the loop evolution, finding that (1) the ionization level of the plasma plays a critical role in determining the location and rate at which waves dissipate; (2) long duration waves effectively bore a hole into the chromosphere, allowing subsequent waves to penetrate deeper than previously expected, unlike an electron beam whose energy deposition rises in height as evaporation reduces the mean-free paths of the electrons; (3) the dissipation of these waves drives a pressure front that propagates to deeper depths, unlike energy deposition by an electron beam.Comment: Accepted to Ap