Design of inhibitors for nucleoside hydrolase from Leishmania donovani using molecular dynamics studies

In this work we propose the first homology model for nucleoside hydrolase from Leishmania donovani, built based on the crystallographic structures of Crithidia fasciculata and Leishmania major nucleoside hydrolases. We used the interaction information from the crystallographic model of the enzyme of C. fasciculata in complex with the inhibitor p-aminophenyliminoribitol, to design two new potential inhibitors, which present new interactions with some residues of the hydrophobic pocket of the model active site. Molecular dynamics simulations of the prototypes inside the active sites of the model and the template enzymes showed that, differently from p-aminophenyliminoribitol, they remained tightly bound inside the active sites, interacting strongly with the amino acids from the hydrophobic pocket

Mesophase evolution in heat-treated solid petroleum pitches

A combination of analytical techniques was used to follow the mesophase evolution of petroleum pitches in the solid phase. The samples were characterized by matrix assisted laser desorption and time of flight analysis by mass spectrometry (MALDI-TOF-MS), high field 13C nuclear magnetic resonance (13C NMR), low field ¹H NMR, electron spin resonance (EPR), polarized optical microscopy and thermogravimetric analysis (TGA). MALDI-TOF-MS revealed an oligomeric distribution of molecular weights in the pitch: monomeric (m/z 200 to 400), dimeric (m/z 400 to 650), trimeric (m/z 650 to 950) and tetrameric (m/z 950 to 1600), an essential factor for the production of carbon fibers, among other advanced composite of carbon. Relaxation time (T1) studies permitted to observe two large areas: the aromatics and the mesophases. These results also showed that the heating time increases the mesophasic area. Also through direct and non-destructive 13C NMR measurements, we obtained the content of aromatic and aliphatic carbons, as well as the degree of protonation of these carbons. Optical microscopy with polarized light showed the interfaces between the anisotropic and isotropic regions as well as the process of coalescence of mesophase. The results obtained by the other techniques corroborate the MALDI-TOF-MS and NMR results.Uma combinação de técnicas analíticas foi utilizada para acompanhar a evolução da mesofase em pixes de petróleo em fase sólida. As amostras foram caracterizadas por dessorção a laser assistida por matriz, seguida de espectrometria de massas por tempo de vôo (MALDI-TOF-MS), ressonância magnética nuclear de 13C (13C NMR) de alto campo, ¹H NMR de baixo campo, ressonância eletrônica de spin (EPR), microscopia ótica polarizada e análise termogravimétrica (TGA). A análise por MALDI-TOF-MS revelou uma distribuição oligomérica de pesos moleculares no pixe: monomérica (m/z 200 a 400), dimérica (m/z 400 a 650), trimérica (m/z 650 a 950) e tetramérica (m/z 950 a 1600), fator essential para a produção de fibras de carbono, bem como outros compósitos de carbono. Estudos de tempo de relaxação (T1) permitiram a observação de duas grandes áreas: a dos aromáticos e a de mesofase. Estes resultados também mostraram que o tempo de aquecimento aumenta a área de mesofase. Através de medidas não destrutivas de 13C NMR, foram obtidos os conteúdos de carbonos aromáticos e alifáticos, e também o grau de protonação desses carbonos. A microscopia ótica com luz polarizada mostrou as interfaces entre as regiões anisotrópicas e isotrópicas, bem como o processo de coalescência da mesofase. Os resultados obtidos pelas outras técnicas corroboram com os resultados de MALDI-TOF-MS e NMR.13551371Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES

Antimalarial Activity of Potential Inhibitors of Plasmodium falciparum Lactate Dehydrogenase Enzyme Selected by Docking Studies

The Plasmodium falciparum lactate dehydrogenase enzyme (PfLDH) has been considered as a potential molecular target for antimalarials due to this parasite's dependence on glycolysis for energy production. Because the LDH enzymes found in P. vivax, P. malariae and P. ovale (pLDH) all exhibit ∼90% identity to PfLDH, it would be desirable to have new anti-pLDH drugs, particularly ones that are effective against P. falciparum, the most virulent species of human malaria. Our present work used docking studies to select potential inhibitors of pLDH, which were then tested for antimalarial activity against P. falciparum in vitro and P. berghei malaria in mice. A virtual screening in DrugBank for analogs of NADH (an essential cofactor to pLDH) and computational studies were undertaken, and the potential binding of the selected compounds to the PfLDH active site was analyzed using Molegro Virtual Docker software. Fifty compounds were selected based on their similarity to NADH. The compounds with the best binding energies (itraconazole, atorvastatin and posaconazole) were tested against P. falciparum chloroquine-resistant blood parasites. All three compounds proved to be active in two immunoenzymatic assays performed in parallel using monoclonals specific to PfLDH or a histidine rich protein (HRP2). The IC50 values for each drug in both tests were similar, were lowest for posaconazole (<5 µM) and were 40- and 100-fold less active than chloroquine. The compounds reduced P. berghei parasitemia in treated mice, in comparison to untreated controls; itraconazole was the least active compound. The results of these activity trials confirmed that molecular docking studies are an important strategy for discovering new antimalarial drugs. This approach is more practical and less expensive than discovering novel compounds that require studies on human toxicology, since these compounds are already commercially available and thus approved for human use

Antimalarial Activity and Mechanisms of Action of Two Novel 4-Aminoquinolines against Chloroquine-Resistant Parasites

Chloroquine (CQ) is a cost effective antimalarial drug with a relatively good safety profile (or therapeutic index). However, CQ is no longer used alone to treat patients with Plasmodium falciparum due to the emergence and spread of CQ-resistant strains, also reported for P. vivax. Despite CQ resistance, novel drug candidates based on the structure of CQ continue to be considered, as in the present work. One CQ analog was synthesized as monoquinoline (MAQ) and compared with a previously synthesized bisquinoline (BAQ), both tested against P. falciparum in vitro and against P. berghei in mice, then evaluated in vitro for their cytotoxicity and ability to inhibit hemozoin formation. Their interactions with residues present in the NADH binding site of P falciparum lactate dehydrogenase were evaluated using docking analysis software. Both compounds were active in the nanomolar range evaluated through the HRPII and hypoxanthine tests. MAQ and BAQ derivatives were not toxic, and both compounds significantly inhibited hemozoin formation, in a dose-dependent manner. MAQ had a higher selectivity index than BAQ and both compounds were weak PfLDH inhibitors, a result previously reported also for CQ. Taken together, the two CQ analogues represent promising molecules which seem to act in a crucial point for the parasite, inhibiting hemozoin formation