Clonal interference and Muller's ratchet in spatial habitats

Competition between independently arising beneficial mutations is enhanced in spatial populations due to the linear rather than exponential growth of clones. Recent theoretical studies have pointed out that the resulting fitness dynamics is analogous to a surface growth process, where new layers nucleate and spread stochastically, leading to the build up of scale-invariant roughness. This scenario differs qualitatively from the standard view of adaptation in that the speed of adaptation becomes independent of population size while the fitness variance does not. Here we exploit recent progress in the understanding of surface growth processes to obtain precise predictions for the universal, non-Gaussian shape of the fitness distribution for one-dimensional habitats, which are verified by simulations. When the mutations are deleterious rather than beneficial the problem becomes a spatial version of Muller's ratchet. In contrast to the case of well-mixed populations, the rate of fitness decline remains finite even in the limit of an infinite habitat, provided the ratio $U_d/s^2$ between the deleterious mutation rate and the square of the (negative) selection coefficient is sufficiently large. Using again an analogy to surface growth models we show that the transition between the stationary and the moving state of the ratchet is governed by directed percolation

Multi-wavelength analysis of 18um-selected galaxies in the AKARI/IRC monitor field towards the North Ecliptic Pole

We present an initial analysis of AKARI 18um-selected galaxies using all 9 photometric bands at 2-24um available in the InfraRed Camera (IRC), in order to demonstrate new capabilities of AKARI cosmological surveys. We detected 72 sources at 18um in an area of 50.2 arcmin^2 in the AKARI/IRC monitor field towards the North Ecliptic Pole (NEP). From this sample, 25 galaxies with probable redshifts z>~ 0.5 are selected with a single colour cut (N2-N3>0.1) for a detailed SED analysis with ground-based BVRi'z'JK data. Using an SED radiative transfer model of starbursts covering the wavelength range UV -- submm, we derive photometric redshifts from the optical-MIR SEDs of 18um-selected galaxies. From the best-fit SED models, we show that the IRC all-band photometry is capable of tracing the steep rise in flux at the blue side of the PAH 6.2um emission feature. This indicates that the IRC all-band photometry is useful to constrain the redshift of infrared galaxies, specifically for dusty galaxies with a less prominent 4000A break. Also, we find that the flux dip between the PAH 7.7 and 11.2um emission feature is recognizable in the observed SEDs of galaxies at z~1. By using such a colour anomaly due to the PAH and silicate absorption features, unique samples of ULIRGs at z~1, `silicate-break' galaxies, can be constructed from large cosmological surveys of AKARI towards the NEP, i.e. the NEP-Deep and NEP-Wide survey. This pilot study suggests the possibility of detecting many interesting galaxy properties in the NEP-Deep and Wide surveys, such as a systematic difference in SEDs between high- and low-z ULIRGs, and a large variation of the PAH inter-band strength ratio in galaxies at high redshifts. [abridged]Comment: Accepted for publication in PASJ, AKARI special issu

Phylogenomic insights to the origin and spread of phocine distemper virus in European harbour seals in 1988 and 2002

The study was supported by the Villum Foundation, the Danish Ministry of the Environment, the Volkswagen Foundation (Az.: 89911) and the BONUS programme BaltHealth, which has received funding from BONUS (Art. 185), funded jointly by the EU, Innovation Fund Denmark (grants 6180-00001B and 6180-00002B), Forschungszentrum Jülich GmbH, German Federal Ministry of Education and Research (grant FKZ 03F0767A), Academy of Finland (grant 311966) and Swedish Foundation for Strategic Environmental Research (MISTRA).The 1988 and 2002 phocine distemper virus (PDV) outbreaks in European harbour seals Phoca vitulina are among the largest mass mortality events recorded in marine mammals. Despite its large impact on harbour seal population numbers, and 3 decades of studies, many questions regarding the spread and temporal origin of PDV remain unanswered. Here, we sequenced and analysed 7123 bp of the PDV genome, including the coding and non-coding regions of the entire P, M, F and H genes in tissues from 44 harbour seals to shed new light on the origin and spread of PDV in 1988 and 2002. The phylogenetic analyses trace the origin of the PDV strain causing the 1988 outbreak to between June 1987 and April 1988, while the origin of the strain causing the 2002 outbreak can be traced back to between July 2001 and April 2002. The analyses further point to several independent introductions of PDV in 1988, possibly linked to a southward mass immigration of harp seals in the winter and spring of 1987−1988. The vector for the 2002 outbreak is unknown, but the epidemiological analyses suggest the subsequent spread of PDV from the epicentre in the Kattegat, Denmark, to haul-out sites in the North Sea through several independent introductions.PostprintPeer reviewe

Electrons in High-Tc Compounds: Ab-Initio Correlation Results

Electronic correlations in the ground state of an idealized infinite-layer high-Tc compound are computed using the ab-initio method of local ansatz. Comparisons are made with the local-density approximation (LDA) results, and the correlation functions are analyzed in detail. These correlation functions are used to determine the effective atomic-interaction parameters for model Hamiltonians. On the resulting model, doping dependencies of the relevant correlations are investigated. Aside from the expected strong atomic correlations, particular spin correlations arise. The dominating contribution is a strong nearest neighbor correlation that is Stoner-enhanced due to the closeness of the ground state to the magnetic phase. This feature depends moderately on doping, and is absent in a single-band Hubbard model. Our calculated spin correlation function is in good qualitative agreement with that determined from the neutron scattering experiments for a metal.Comment: 21pp, 5fig, Phys. Rev. B (Oct. 98

Is the central-marginal hypothesis a general rule? Evidence from three distributions of an expanding mangrove species, Avicennia germinans (L.)

The central-marginal hypothesis (CMH) posits that range margins exhibit less genetic diversity 16 and greater inter-population genetic differentiation compared to range cores. CMH predictions 17 are based on long-held ‘abundant-centre’ assumptions of a decline in ecological conditions and 18 abundances towards range margins. Although much empirical research has confirmed CMH, 19 exceptions remain almost as common. We contend that mangroves provide a model system to 20 test CMH that alleviates common confounding factors and may help clarify this lack of 21 consensus. Here, we document changes in black mangrove (Avicennia germinans) population 22 genetics with 12 nuclear microsatellite loci along three replicate coastlines in the United States 23 (only 2 of 3 conform to underlying ‘abundant-centre’ assumptions). We then test an implicit 24 prediction of CMH (reduced genetic diversity may constrain adaptation at range margins) by 25 measuring functional traits of leaves associated with cold tolerance, the climatic factor that 26 controls these mangrove distributional limits. CMH predictions were confirmed only along the 27 coastlines that conform to ‘abundant-centre’ assumptions and, in contrast to theory, range margin 28 A. germinans exhibited functional traits consistent with greater cold tolerance compared to range 29 cores. These findings support previous accounts that CMH may not be a general rule across 30 species and that reduced neutral genetic diversity at range margins may not be a constraint to 31 shifts in functional trait variation along climatic gradients

Appetite and falls: Old age and lived experiences

Falling among older adults is a well-known public health problem but the association between falling and appetite is seldom studied although poor nutritional status is accepted as a risk factor for falls. On this background the aim of this study was to understand how older adults, who have fallen several times within a year, related their experiences of appetite as a phenomenon in everyday life. In narrative in-depth interviews, eight women and four men contributed with their stories. Using interpretative phenomenology the thematic analysis resulted in three main themes: appetite for food; appetite for social relations and appetite for influence. Eating was not trivial everyday routine and required self-regimentation. Meals were not an object of desire, but of discipline out of the wish to survive. Feelings, reflections and ambivalence were bound to the lack of appetite on food. The participants were oriented towards the forbidden, the delicious and to everyday food as a strengthener and as medicine. In their dependency on help, home was the framework for establishing social relations as means of social support. As well as family and neighbours, the significant others were persons on whom the participants were dependent. Personal relationships and mutual dependencies may ensure social security in lives characterised by contingency and maintain influence in daily life. Falling is both a dramatic and a trivial incident where life and death could be at stake. From this perspective, connectedness was prominent in all fall stories. The quest for influence and a sense of social connectedness was the incentive to re-enter local community arenas and to express solidarity. In health-care practice multi-factorial fall-prevention should be complemented with a multi-dimensional approach in order to balance the medical approach with humanistic and societal approaches towards fall-prevention

Building genomic infrastructure: Sequencing platinum-standard reference-quality genomes of all cetacean species.

International audienc

Evidence for intron length conservation in a set of mammalian genes associated with embryonic development

<p>Abstract</p> <p>Background</p> <p>We carried out an analysis of intron length conservation across a diverse group of nineteen mammalian species. Motivated by recent research suggesting a role for time delays associated with intron transcription in gene expression oscillations required for early embryonic patterning, we searched for examples of genes that showed the most extreme conservation of total intron content in mammals.</p> <p>Results</p> <p>Gene sets annotated as being involved in pattern specification in the early embryo or containing the homeobox DNA-binding domain, were significantly enriched among genes with highly conserved intron content. We used ancestral sequences reconstructed with probabilistic models that account for insertion and deletion mutations to distinguish insertion and deletion events on lineages leading to human and mouse from their last common ancestor. Using a randomization procedure, we show that genes containing the homeobox domain show less change in intron content than expected, given the number of insertion and deletion events within their introns.</p> <p>Conclusions</p> <p>Our results suggest selection for gene expression precision or the existence of additional development-associated genes for which transcriptional delay is functionally significant.</p