Some problems on Palaeozoic-Mesozoic tectonics inSouthwest Japan: Tectonics of metamorphic belts of high-pressure type

Tectonics of the Sangun belt and Sambagawa belt in Southwest Japan, which belong to the metamorphic belt of high-pressure type, have been discussed in this paper. Regarding the Sangun belt, the tectonics of the phases when the original rocks of the Sangun belt were deposited and the Sangun metamorphic field appeared have been analysed. As for the Sambagawa belt, the tectonics of the phases when the Sambagawa metamorphic field was placed under the condition of the highest temperature and then its collapse began have been analysed

Tectonic Evolution of the Sambagawa Schists and its Implications in Convergent Margin Processes

The Sambagawa schists as high P /T metamorphic rocks are a member of Mesozoic accretionary complexes developed in the southern front of the Kurosegawa-Koryoke continent of Southwest Japan. The Mesozoic accretionary complexes are divided into four megaunits developed as nappes, Chichibu megaunit II, Sambagawa megaunit, Chichibu megaunit I and Shimanto megaunit in descending order of structural level. The Chichibu megaunit II consists of three accretionary units developed as nappes, late early Jurassic unit, late middle Jurassic unit and latest Jurassic unit (Mikabu unit) in descending order of structural level. The Chichibu megaunit I consists of five accretionary units developed as nappes, late middle Jurassic unit (Niyodo unit), late Jurassic unit, Valanginian unit, Barremian unit and Albian unit in descending order of structural level. The Shimanto megaunit, which just underlies the Chichibu megaunit I, is Cenomanian-Turonian accretionary unit and Coniacian-Campanian accretionary unit. The schists, which underlie the Chichibu megaunit II, all have been so far called the Sambagawa schists. These are divided into six units, Saruta unit, Fuyunose unit, Sogauchi unit, Sakamoto unit, Oboke unit and Tatsuyama unit in descending order of structural level, which show different tectono-metamorphic history and different radiometric ages from each other. The Sakamoto unit, Oboke unit and Tatsuyama unit have been assumed with reference to their radiometric ages and structural relations to belong to the late middle Jurassic accretionary unit of the Chichibu megaunit I (high pressure equivalent of the Niyodo unit), the Cenomanian-Turonian accretionary unit of the Shimanto megaunit and the Coniacian-Campanian accretionary unit of the Shimanto megaunit respectively in this paper. The upper member of the Sambagawa schists, Saruta unit, Fuyunose unit and Sogauchi unit, is therefore called the Sambagawa megaunit in this paper. The northern half and the southern half of the Sambagawa megaunit are intercalated as nappes between the Chichibu megaunit II and the Oboke unit and between the Chichibu megaunit II and the Sakamoto unit respectively. The constituent units of the Chichibu megaunit II, Sambagawa megaunit and Shimanto megaunit clearly show a downward younging age polarity, as compared with each other with reference to the oldest one of radiometric ages ( = metamorphic ages) of each unit. The Chichibu megaunit II and the Chichibu megaunit I show the same radiometric ages as compared between them with the same fossil age. The Saruta unit, Fuyunose unit and Sogauchi unit have therefore been assumed to be high pressure equivalent of Valanginian unit, that of Barremian unit and that of Albian unit of the Chichibu megaunit I respectively. These high pressure units were exhumed, separating the Chichibu supermegaunit into the Chichibu megaunit II and the Chichibu megaunit I and thrusting up onto the Chichibu megaunit I. On the basis of the growth history of amphibole in hematite-bearing basic schists of the Sambagawa megaunit, it has been assumed that the highest temperature metamorphism of the Fuyunose unit occurred, when it had been coupled with the Saruta unit which was exhuming, and that of the Sogauchi unit did through its coupling with the Fuyunose and Saruta units which were exhuming. In the subduction zone which was responsible for the formation of the Sambagawa megaunit, namely, the peak metamorphism of a newly subducted unit appears to have occurred when it had been coupled with previously subcreted units which were exhuming. It has been also clarified that the subduction of a new unit occurred mixing the lower pressure part of the pre-existing subcretion unit as tectonic blocks. There is a distinct difference in the oldest one of radiometric ages between constituent units of the Sambagawa schists, showing a downward younging age polarity. The oldest one of radiometric ages of each unit appears to approximate to the age of the ending of peak metamorphism and to the age (Eh age) of the beginning of its exhumation. Such the tectonics of the Sambagawa megaunit would be explained in term of two-way street model. Because the age (Sub age) of the beginning of the subduction of each unit can be assumed from its fossil age, the average velocity of the subduction and that of the exhumation of the Sambagawa megaunit in Shikoku have roughly been estimated to be ca. 0.9 mm/year and ca. 2.0 mm/year respectively. Deformation of quartz, whose style depends strongly upon strain rate, resulted in type I crossed girdle without conentration in Y even in the depth part of more than 10kb of the subduction zone, which was placed under temperature condition of much higher than 500°C, unlike the cases of magma-arcs where quartz c-axis fabrics with maximum concentration in Y are found in gneisses produced under temperature condition of lower than 500°C. Quartz deformation in the depth part of 15-17kb of the subduction zone appears to have occurred as dominant prism slip. The hanging wall of the Kurosegawa-Koryoke continent, which was placed at the depth of ca. 15-17 kb, thrust onto the Saruta unit at the depth of ca. 10-11 kb, accompanying intermingling of constituent rocks of the former and the latter and also mixing of various depth parts of the latter. The highest temperature metamorphism of the Saruta unit, which appears to have occurred under metamorphic condition of lower P /T than under that related to the formation of the general type of high P /T type metamorphic rocks, is ascribed to a contact metamorphism related to the overthrusting of the Kurosegawa-Koryoke continent. The thrusting of the Kurosegawa-Koryoke continent is ascribed to its collision with the Hida continent. The coupling of the previously subcreted Saruta unit with the newly subcreted Fuyunose unit occurred accompanying nearly isobaric cooling of the former. The great exhumation of the Saruta nappe (I + II) and Fuyunose nappe schists with great volume began together with the subcretion of the Sogauchi unit. The beginning age of the exhumation of the Sambagawa schists with great volume appears to coincide with that of the subduction of the Kula-Pacific ridge in Kyushu-Shikoku, which has been assumed by Kiminami et al. (1990). Namely, their great exhumation occurred with the progress of the subduction of the Kula-Pacific ridge with an eastward younging age polarity. The exhumation units, which were developed after the Mikabu unit, clearly show an eastward younging age polarity. Namely, these comparable with the Saruta unit, Fuyunose unit and Sogauchi unit are not found in central Japan and the Kanto Mountains. Rock deformation in the deformation related to the exhumation of the Sambagawa schists and their underlying schists appears to have commonly been of flattened type in mean strain. During the Ozu phase when the Kula-Pacific ridge subducted to the greater depth, the collapse of the Kurosegawa-Koryoke continent took again place, accompanying that of the pile nappe structures of the Sambagawa megaunit, Chichibu megaunit I and Oboke unit, and the thermal gradient along the plate boundary greatly changed, giving rise to medium P/T type metamorphism in the subduction zone (formation of the Tatsuyama nappe schists). The geological structures of the Sambagawa megaunit consist thus of two types of pile nappe structures, pre-Ozu phase pile nappe structures and Ozu phase pile nappe structures. The former is structures related to the coupling of the exhuming units ( = previously subcreted units) with the newly subcreted unit. The latter is structures showing the collapse of the former. The Ozu phase pile nappe structures are further divided into the pile nappe structures formed during the earlier stage (Tsuji stage) of the Ozu phase and these formed during the later stage (Futami stage). The former is disharmonic with reference to movement picture with the latter: The deformation related to the formation of the former, accompanying exhumation of the Oboke nappes, appears to contain a component of northward displacement, while that for the latter does a component of southward displacement. After the Ozu phase deformation the Sambagawa megaunit suffered the Hijikawa-Oboke phase folding, forming a series of sinistral en echelon upright folds. The relationship between the above-mentioned tectonic events of the Sambagawa megaunit and its surroundings and their radiometric ages is summarized as follows: [Original table is skipped. For more details, please refer to the full text.

A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem

<div><p>A nearly complete genome sequence of <em>Candidatus</em> ‘Acetothermum autotrophicum’, a presently uncultivated bacterium in candidate division OP1, was revealed by metagenomic analysis of a subsurface thermophilic microbial mat community. Phylogenetic analysis based on the concatenated sequences of proteins common among 367 prokaryotes suggests that <em>Ca.</em> ‘A. autotrophicum’ is one of the earliest diverging bacterial lineages. It possesses a folate-dependent Wood-Ljungdahl (acetyl-CoA) pathway of CO₂ fixation, is predicted to have an acetogenic lifestyle, and possesses the newly discovered archaeal-autotrophic type of bifunctional fructose 1,6-bisphosphate aldolase/phosphatase. A phylogenetic analysis of the core gene cluster of the acethyl-CoA pathway, shared by acetogens, methanogens, some sulfur- and iron-reducers and dechlorinators, supports the hypothesis that the core gene cluster of <em>Ca.</em> ‘A. autotrophicum’ is a particularly ancient bacterial pathway. The habitat, physiology and phylogenetic position of <em>Ca.</em> ‘A. autotrophicum’ support the view that the first bacterial and archaeal lineages were H₂-dependent acetogens and methanogenes living in hydrothermal environments.</p> </div

Fluorine-19 Magnetic Resonance Imaging for Detection of Amyloid β Oligomers Using a Keto Form of Curcumin Derivative in a Mouse Model of Alzheimer\u27s Disease.

Recent evidence suggests that the formation of soluble amyloid β (Aβ) aggregates with high toxicity, such as oligomers and protofibrils, is a key event that causes Alzheimer\u27s disease (AD). However, understanding the pathophysiological role of such soluble Aβ aggregates in the brain in vivo could be difficult due to the lack of a clinically available method to detect, visualize, and quantify soluble Aβ aggregates in the brain. We had synthesized a novel fluorinated curcumin derivative with a fixed keto form, named as Shiga-Y51, which exhibited high selectivity to Aβ oligomers in vitro. In this study, we investigated the in vivo detection of Aβ oligomers by fluorine-19 (19F) magnetic resonance imaging (MRI) using Shiga-Y51 in an APP/PS1 double transgenic mouse model of AD. Significantly high levels of 19F signals were detected in the upper forebrain region of APP/PS1 mice compared with wild-type mice. Moreover, the highest levels of Aβ oligomers were detected in the upper forebrain region of APP/PS1 mice in enzyme-linked immunosorbent assay. These findings suggested that 19F-MRI using Shiga-Y51 detected Aβ oligomers in the in vivo brain. Therefore, 19F-MRI using Shiga-Y51 with a 7 T MR scanner could be a powerful tool for imaging Aβ oligomers in the brain

Keto form of curcumin derivatives strongly binds to Aβ oligomers but not fibrils.

The accumulation of β-amyloid (Aβ) aggregates in the brain occurs early in the progression of Alzheimer\u27s disease (AD), and non-fibrillar soluble Aβ oligomers are particularly neurotoxic. During binding to Aβ fibrils, curcumin, which can exist in an equilibrium state between its keto and enol tautomers, exists predominantly in the enol form, and binding activity of the keto form to Aβ fibrils is much weaker. Here we described the strong binding activity the keto form of curcumin derivative Shiga-Y51 shows for Aβ oligomers and its scant affinity for Aβ fibrils. Furthermore, with imaging mass spectrometry we revealed the blood-brain barrier permeability of Shiga-Y51 and its accumulation in the cerebral cortex and the hippocampus, where Aβ oligomers were mainly localized, in a mouse model of AD. The keto form of curcumin derivatives like Shiga-Y51 could be promising seed compounds to develop imaging probes and therapeutic agents targeting Aβ oligomers in the brain

CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes

BACKGROUND: The recent accumulation of closely related genomic sequences provides a valuable resource for the elucidation of the evolutionary histories of various organisms. However, although numerous alignment calculation and visualization tools have been developed to date, the analysis of complex genomic changes, such as large insertions, deletions, inversions, translocations and duplications, still presents certain difficulties. RESULTS: We have developed a comparative genome analysis tool, named CGAT, which allows detailed comparisons of closely related bacteria-sized genomes mainly through visualizing middle-to-large-scale changes to infer underlying mechanisms. CGAT displays precomputed pairwise genome alignments on both dotplot and alignment viewers with scrolling and zooming functions, and allows users to move along the pre-identified orthologous alignments. Users can place several types of information on this alignment, such as the presence of tandem repeats or interspersed repetitive sequences and changes in G+C contents or codon usage bias, thereby facilitating the interpretation of the observed genomic changes. In addition to displaying precomputed alignments, the viewer can dynamically calculate the alignments between specified regions; this feature is especially useful for examining the alignment boundaries, as these boundaries are often obscure and can vary between programs. Besides the alignment browser functionalities, CGAT also contains an alignment data construction module, which contains various procedures that are commonly used for pre- and post-processing for large-scale alignment calculation, such as the split-and-merge protocol for calculating long alignments, chaining adjacent alignments, and ortholog identification. Indeed, CGAT provides a general framework for the calculation of genome-scale alignments using various existing programs as alignment engines, which allows users to compare the outputs of different alignment programs. Earlier versions of this program have been used successfully in our research to infer the evolutionary history of apparently complex genome changes between closely related eubacteria and archaea. CONCLUSION: CGAT is a practical tool for analyzing complex genomic changes between closely related genomes using existing alignment programs and other sequence analysis tools combined with extensive manual inspection

Fish immunization using a synthetic double-stranded RNA Poly(I:C), an interferon inducer, offers protection against RGNNV, a fish nodavirus

Viral nervous necrosis (VNN), caused by a fish nodavirus, is one of the most serious fish diseases worldwide. Here we report a unique vaccination method in sevenband grouper Epinephelus septemfasciatus using a synthetic double-stranded RNA polyinosinic polycytidylic acid (Poly(I:C)), an interferon inducer, followed by challenge with a live fish nodavirus. Fish injected with Poly(I:C) at 200 µg fish(-1) were highly protected from artificial challenge with red-spotted grouper nervous necrosis virus (RGNNV) (relative percentage survival, RPS: 100%), and specific antibodies against RGNNV were detected in sera from survivors. Moreover, the surviving fish were protected from rechallenge with RGNNV (relative percent survival RPS: 100%). Thus, it was confirmed that specific immunity against RGNNV was established in sevenband grouper by injection with live RGNNV following Poly(I:C) administration. Antiviral state was induced in fish by injection with Poly(I:C) at ≥50 µg fish(-1), but no toxic response was observed in the fish even if Poly(I:C) was injected at a dose of 200 µg fish(-1). In fish injected with Poly(I:C) at 200 µg fish(-1), a high level of antiviral state of > 90% RPS against RGNNV challenge lasted for at least 4 d after Poly(I:C) injection. However, no curative effect by Poly(I:C) injection was observed in fish already infected with RGNNV. It is considered that the present immunization method using Poly(I:C) followed by a live virus injection could offer protection against various viral infections in a broader range of fish species

Protection of Japanese flounder Paralichthys olivaceus from viral hemorrhagic septicemia (VHS) by Poly(I:C) immunization

In immunization of fish with polyinosinic-polycytidylic acid (poly[I:C], a synthetic double-stranded RNA), injection of Poly(I:C) followed by challenge with a live virus induces a transient, non-specific antiviral state by interferon activity. When exposed to a virus while in this antiviral state, the fish acquire a specific and protective immunity against the corresponding viral disease and survive. In the present study, the effiacy of Poly(I:C) immunization was investigated in japanese flounder Paralichthys olivaceus using viral hemorrhagic septicemia virus (VHSV) as a model; the minimum dose of Poly(I:C) required for inducing protection and the duration of the antiviral state were determined, and a potentially curative effect of Poly(I:C) administration was assessed. The antiviral state was induced by administration of Poly(I:C) doses ranging from 12.5 to 200 µg fish(-1). Minimum dose to induce the antiviral state (relative percentage survival, RPS: 90%) was 12.5 µg fish(-1). No curative effect of Poly(I:C) was observed in fish pre-infected with VHSV. Fish injected with 200 µg Poly(I:C) fish(-1) were highly protected (RPS: 100%) from an artificial challenge with VHSV, and specific antibodies against VHSV were detected. The corresponding high level of antiviral state against VHSV was attained 1 d post Poly(I:C) injection, lasted for 6 d and susequently decreased. Moreover, the surviving fish were highly protected from re-challenge with VHSV (RPS: 100%). Thus, it was considered that an immunity against viral hemorrhagic septicemia was induced in the Japanese flounder by injecting live VHSV following Poly(I:C) administration