XTHs from Fragaria vesca: Genomic structure and transcriptomic analysis in ripening fruit and other tissues

Indexación: Scopus.Background: Fragaria vesca or 'woodland strawberry' has emerged as an attractive model for the study of ripening of non-climacteric fruit. It has several advantages, such as its small genome and its diploidy. The recent availability of the complete sequence of its genome opens the possibility for further analysis and its use as a reference species. Fruit softening is a physiological event and involves many biochemical changes that take place at the final stages of fruit development; among them, the remodeling of cell walls by the action of a set of enzymes. Xyloglucan endotransglycosylase/hydrolase (XTH) is a cell wall-associated enzyme, which is encoded by a multigene family. Its action modifies the structure of xyloglucans, a diverse group of polysaccharides that crosslink with cellulose microfibrills, affecting therefore the functional structure of the cell wall. The aim of this work is to identify the XTH-encoding genes present in F. vesca and to determine its transcription level in ripening fruit. Results: The search resulted in identification of 26 XTH-encoding genes named as FvXTHs. Genetic structure and phylogenetic analyses were performed allowing the classification of FvXTH genes into three phylogenetic groups: 17 in group I/II, 2 in group IIIA and 4 in group IIIB. Two sequences were included into the ancestral group. Through a comparative analysis, characteristic structural protein domains were found in FvXTH protein sequences. In complement, expression analyses of FvXTHs by qPCR were performed in fruit at different developmental and ripening stages, as well as, in other tissues. The results showed a diverse expression pattern of FvXTHs in several tissues, although most of them are highly expressed in roots. Their expression patterns are not related to their respective phylogenetic groups. In addition, most FvXTHs are expressed in ripe fruit, and interestingly, some of them (FvXTH 18 and 20, belonging to phylogenic group I/II, and FvXTH 25 and 26 to group IIIB) display an increasing expression pattern as the fruit ripens. Conclusion: A discrete group of FvXTHs (18, 20, 25 and 26) increases their expression during softening of F. vesca fruit, and could take part in cell wall remodeling required for softening in collaboration with other cell wall degrading enzymes.https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4255-

Polarized Dirac fermions in de Sitter spacetime

The tetrad gauge invariant theory of the free Dirac field in two special moving charts of the de Sitter spacetime is investigated pointing out the operators that commute with the Dirac one. These are the generators of the symmetry transformations corresponding to isometries that give rise to conserved quantities according to the Noether theorem. With their help the plane wave spinor solutions of the Dirac equation with given momentum and helicity are derived and the final form of the quantum Dirac field is established. It is shown that the canonical quantization leads to a correct physical interpretation of the massive or massless fermion quantum fields.Comment: 19 pages, LaTeX w AMS sym

Crossing Statistic: Bayesian interpretation, model selection and resolving dark energy parametrization problem

By introducing Crossing functions and hyper-parameters I show that the Bayesian interpretation of the Crossing Statistics [1] can be used trivially for the purpose of model selection among cosmological models. In this approach to falsify a cosmological model there is no need to compare it with other models or assume any particular form of parametrization for the cosmological quantities like luminosity distance, Hubble parameter or equation of state of dark energy. Instead, hyper-parameters of Crossing functions perform as discriminators between correct and wrong models. Using this approach one can falsify any assumed cosmological model without putting priors on the underlying actual model of the universe and its parameters, hence the issue of dark energy parametrization is resolved. It will be also shown that the sensitivity of the method to the intrinsic dispersion of the data is small that is another important characteristic of the method in testing cosmological models dealing with data with high uncertainties.Comment: 14 pages, 4 figures, discussions extended, 1 figure and two references added, main results unchanged, matches the final version to be published in JCA

Anisotropic Aerogels for Studying Superfluid 3^3He

It may be possible to stabilize new superfluid phases of $^{3}$He with anisotropic silica aerogels. We discuss two methods that introduce anisotropy in the aerogel on length scales relevant to superfluid $^{3}$He. First, anisotropy can be induced with uniaxial strain. A second method generates anisotropy during the growth and drying stages. We have grown cylindrical $\sim$98% aerogels with anisotropy indicated by preferential radial shrinkage after supercritical drying and find that this shrinkage correlates with small angle x-ray scattering (SAXS). The growth-induced anisotropy was found to be $\sim90^\circ$ out of phase relative to that induced by strain. This has implications for the possible stabilization of superfluid phases with specific symmetry.Comment: 6 pages, 4 figures, submitted to Quantum Fluids and Solids (QFS) conference 200

Globally Anisotropic High Porosity Silica Aerogels

We discuss two methods by which high porosity silica aerogels can be engineered to exhibit global anisotropy. First, anisotropy can be introduced with axial strain. In addition, intrinsic anisotropy can result during growth and drying stages and, suitably controlled, it can be correlated with preferential radial shrinkage in cylindrical samples. We have performed small angle X-ray scattering (SAXS) to characterize these two types of anisotropy. We show that global anisotropy originating from either strain or shrinkage leads to optical birefringence and that optical cross-polarization studies are a useful characterization of the uniformity of the imposed global anisotropy.Comment: 18 pages, 14 figures, submitted to Journal of Non-Crystalline Solid

Topologically Alice Strings and Monopoles

Symmetry breaking can produce ``Alice'' strings, which alter scattered charges and carry monopole number and charge when twisted into loops. Alice behavior arises algebraically, when strings obstruct unbroken symmetries -- a fragile criterion. We give a topological criterion, compelling Alice behavior or deforming it away. Our criterion, that \pi_o(H) acts nontrivially on \pi_1(H), links topologically Alice strings to topological monopoles. We twist topologically Alice loops to form monopoles. We show that Alice strings of condensed matter systems (nematic liquid crystals, helium 3A, and related non-chiral Bose condensates and amorphous chiral superconductors) are topologically Alice, and support fundamental monopole charge when twisted into loops. Thus they might be observed indirectly, not as strings, but as loop-like point defects. We describe other models, showing Alice strings failing our topological criterion; and twisted Alice loops supporting deposited, but not fundamental, monopole number.Comment: 2 figures; this paper consolidates preprints hep-th/0304161 and hep-th/0304162, to appear in Phys. Rev.

Cosmological Constraints from calibrated Yonetoku and Amati relation implies Fundamental plane of Gamma-ray bursts

We consider two empirical relations using data only from the prompt emission of Gamma-Ray Bursts (GRBs), peak energy ($E_p$) - peak luminosity ($L_p$) relation (so called Yonetoku relation) and $E_p$-isotropic energy ($E_{\rm iso}$) relation (so called Amati relation). We first suggest the independence of the two relations although they have been considered similar and dependent. From this viewpoint, we compare constraints on cosmological parameters, $\Omega_m$ and $\Omega_{\Lambda}$, from the Yonetoku and Amati relations calibrated by low-redshift GRBs with $z < 1.8$. We found that they are different in 1-$\sigma$ level, although they are still consistent in 2-$\sigma$ level. This and the fact that both Amati and Yonetoku relations have systematic errors larger than statistical errors suggest the existence of a hidden parameter of GRBs. We introduce the luminosity time $T_L$ defined by $T_L\equiv E_{\rm iso}/L_p$ as a hidden parameter to obtain a generalized Yonetoku relation as $(L_p/{10^{52} \rm{erg s^{-1}}}) = 10^{-3.88\pm0.09}(E_p/{\rm{keV}})^{1.84\pm0.04} (T_L/{\rm{s}})^{-0.34\pm0.04}$. The new relation has much smaller systematic error, 30%, and can be regarded as "Fundamental plane" of GRBs. We show a possible radiation model for this new relation. Finally we apply the new relation for high-redshift GRBs with $1.8 < z < 5.6$ to obtain $(\Omega_m,\Omega_{\Lambda}) = (0.16^{+0.04}_{-0.06},1.20^{+0.03}_{-0.09})$, which is consistent with the concordance cosmological model within 2-$\sigma$ level.Comment: 5 pages, 6 figures, published in JCA

Probing the cosmic acceleration from combinations of different data sets

We examine in some detail the influence of the systematics in different data sets including type Ia supernova sample, baryon acoustic oscillation data and the cosmic microwave background information on the fitting results of the Chevallier-Polarski-Linder parametrization. We find that the systematics in the data sets does influence the fitting results and leads to different evolutional behavior of dark energy. To check the versatility of Chevallier-Polarski-Linder parametrization, we also perform the analysis on the Wetterich parametrization of dark energy. The results show that both the parametrization of dark energy and the systematics in data sets influence the evolutional behavior of dark energy.Comment: 15 pages, 5 figures and 1 table, major revision, delete bao a data, main results unchanged. jcap in press

Statefinder diagnostic in a torsion cosmology

We apply the statefinder diagnostic to the torsion cosmology, in which an accounting for the accelerated universe is considered in term of a Riemann-Cartan geometry: dynamic scalar torsion. We find that there are some typical characteristic of the evolution of statefinder parameters for the torsion cosmology that can be distinguished from the other cosmological models. Furthermore, we also show that statefinder diagnostic has a direct bearing on the critical points. The statefinder diagnostic divides the torsion parameter $a_1$ into differential ranges, which is in keeping with the requirement of dynamical analysis. In addition, we fit the scalar torsion model to ESSENCE supernovae data and give the best fit values of the model parameters.Comment: 18 pages, 15 figures, accepted paper in JCA

Engineering Analysis of Intermediate Loop and Process Heat Exchanger Requirements to Include Configuration Analysis and Materials Needs

The need to locate advanced hydrogen production facilities a finite distance away from a nuclear power source necessitates the need for an intermediate heat transport loop (IHTL). This IHTL must not only efficiently transport energy over distances up to 500 meters but must also be capable of operating at high temperatures (>850oC) for many years. High temperature, long term operation raises concerns of material strength, creep resistance and general material stability (corrosion resistance). IHTL design is currently in the initial stages. Many questions remain to be answered before intelligent design can begin. The report begins to look at some of the issues surrounding the main components of an IHTL. Specifically, a stress analysis of a compact heat exchanger design under expected operating conditions is reported. Also the results of a thermal analysis performed on two ITHL pipe configurations for different heat transport fluids are presented. The configurations consist of separate hot supply and cold return legs as well as annular design in which the hot fluid is carried in an inner pipe and the cold return fluids travels in the opposite direction in the annular space around the hot pipe. The effects of insulation configurations on pipe configuration performance are also reported. Finally, a simple analysis of two different process heat exchanger designs, one a tube in shell type and the other a compact or microchannel reactor are evaluated in light of catalyst requirements. Important insights into the critical areas of research and development are gained from these analyses, guiding the direction of future areas of research