7,267 research outputs found
Metabolic flexibility as a major predictor of spatial distribution in microbial communities
A better understand the ecology of microbes and their role in the global ecosystem could be achieved if traditional ecological theories can be applied to microbes. In ecology organisms are defined as specialists or generalists according to the breadth of their niche. Spatial distribution is often used as a proxy measure of niche breadth; generalists have broad niches and a wide spatial distribution and specialists a narrow niche and spatial distribution. Previous studies suggest that microbial distribution patterns are contrary to this idea; a microbial generalist genus (Desulfobulbus) has a limited spatial distribution while a specialist genus (Methanosaeta) has a cosmopolitan distribution. Therefore, we hypothesise that this counter-intuitive distribution within generalist and specialist microbial genera is a common microbial characteristic. Using molecular fingerprinting the distribution of four microbial genera, two generalists, Desulfobulbus and the methanogenic archaea Methanosarcina, and two specialists, Methanosaeta and the sulfate-reducing bacteria Desulfobacter were analysed in sediment samples from along a UK estuary. Detected genotypes of both generalist genera showed a distinct spatial distribution, significantly correlated with geographic distance between sites. Genotypes of both specialist genera showed no significant differential spatial distribution. These data support the hypothesis that the spatial distribution of specialist and generalist microbes does not match that seen with specialist and generalist large organisms. It may be that generalist microbes, while having a wider potential niche, are constrained, possibly by intrageneric competition, to exploit only a small part of that potential niche while specialists, with far fewer constraints to their niche, are more capable of filling their potential niche more effectively, perhaps by avoiding intrageneric competition. We suggest that these counter-intuitive distribution patterns may be a common feature of microbes in general and represent a distinct microbial principle in ecology, which is a real challenge if we are to develop a truly inclusive ecology
Mean first-passage times of non-Markovian random walkers in confinement
The first-passage time (FPT), defined as the time a random walker takes to
reach a target point in a confining domain, is a key quantity in the theory of
stochastic processes. Its importance comes from its crucial role to quantify
the efficiency of processes as varied as diffusion-limited reactions, target
search processes or spreading of diseases. Most methods to determine the FPT
properties in confined domains have been limited to Markovian (memoryless)
processes. However, as soon as the random walker interacts with its
environment, memory effects can not be neglected. Examples of non Markovian
dynamics include single-file diffusion in narrow channels or the motion of a
tracer particle either attached to a polymeric chain or diffusing in simple or
complex fluids such as nematics \cite{turiv2013effect}, dense soft colloids or
viscoelastic solution. Here, we introduce an analytical approach to calculate,
in the limit of a large confining volume, the mean FPT of a Gaussian
non-Markovian random walker to a target point. The non-Markovian features of
the dynamics are encompassed by determining the statistical properties of the
trajectory of the random walker in the future of the first-passage event, which
are shown to govern the FPT kinetics.This analysis is applicable to a broad
range of stochastic processes, possibly correlated at long-times. Our
theoretical predictions are confirmed by numerical simulations for several
examples of non-Markovian processes including the emblematic case of the
Fractional Brownian Motion in one or higher dimensions. These results show, on
the basis of Gaussian processes, the importance of memory effects in
first-passage statistics of non-Markovian random walkers in confinement.Comment: Submitted version. Supplementary Information can be found on the
Nature website :
http://www.nature.com/nature/journal/v534/n7607/full/nature18272.htm
Conditional control of the quantum states of remote atomic memories for quantum networking
Quantum networks hold the promise for revolutionary advances in information
processing with quantum resources distributed over remote locations via
quantum-repeater architectures. Quantum networks are composed of nodes for
storing and processing quantum states, and of channels for transmitting states
between them. The scalability of such networks relies critically on the ability
to perform conditional operations on states stored in separated quantum
memories. Here we report the first implementation of such conditional control
of two atomic memories, located in distinct apparatuses, which results in a
28-fold increase of the probability of simultaneously obtaining a pair of
single photons, relative to the case without conditional control. As a first
application, we demonstrate a high degree of indistinguishability for remotely
generated single photons by the observation of destructive interference of
their wavepackets. Our results demonstrate experimentally a basic principle for
enabling scalable quantum networks, with applications as well to linear optics
quantum computation.Comment: 10 pages, 8 figures; Minor corrections. References updated. Published
at Nature Physics 2, Advanced Online Publication of 10/29 (2006
Fluctuation scaling in complex systems: Taylor's law and beyond
Complex systems consist of many interacting elements which participate in
some dynamical process. The activity of various elements is often different and
the fluctuation in the activity of an element grows monotonically with the
average activity. This relationship is often of the form "", where the exponent is predominantly in
the range . This power law has been observed in a very wide range of
disciplines, ranging from population dynamics through the Internet to the stock
market and it is often treated under the names \emph{Taylor's law} or
\emph{fluctuation scaling}. This review attempts to show how general the above
scaling relationship is by surveying the literature, as well as by reporting
some new empirical data and model calculations. We also show some basic
principles that can underlie the generality of the phenomenon. This is followed
by a mean-field framework based on sums of random variables. In this context
the emergence of fluctuation scaling is equivalent to some corresponding limit
theorems. In certain physical systems fluctuation scaling can be related to
finite size scaling.Comment: 33 pages, 20 figures, 2 tables, submitted to Advances in Physic
Cyclophyllidea van Beneden in Braun, 1900
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License
Do mutual funds have consistency in their performance?
Using a comprehensive data set of 714 Chinese mutual funds from 2004 to 2015, the study investigates these funds’ performance persistence by using the Capital Asset Pricing model, the Fama-French three-factor model and the Carhart Four-factor model. For persistence analysis, we categorize mutual funds into eight octiles based on their one year lagged performance and then observe their performance for the subsequent
12 months. We also apply Cross-Product Ratio technique to assess the performance
persistence in these Chinese funds. The study finds no significant evidence of persis- tence in the performance of the mutual funds. Winner (loser) funds do not continue to be winner (loser) funds in the subsequent time period. These findings suggest that future performance of funds cannot be predicted based on their past performance.info:eu-repo/semantics/publishedVersio
Successful Amelioration of Mitochondrial Optic Neuropathy Using the Yeast NDI1 Gene in a Rat Animal Model
Background: Leber’s hereditary optic neuropathy (LHON) is a maternally inherited disorder with point mutations in mitochondrial DNA which result in loss of vision in young adults. The majority of mutations reported to date are within the genes encoding the subunits of the mitochondrial NADH-quinone oxidoreductase, complex I. Establishment of animal models of LHON should help elucidate mechanism of the disease and could be utilized for possible development of therapeutic strategies. Methodology/Principal Findings: We established a rat model which involves injection of rotenone-loaded microspheres into the optic layer of the rat superior colliculus. The animals exhibited the most common features of LHON. Visual loss was observed within 2 weeks of rotenone administration with no apparent effect on retinal ganglion cells. Death of retinal ganglion cells occurred at a later stage. Using our rat model, we investigated the effect of the yeast alternative NADH dehydrogenase, Ndi1. We were able to achieve efficient expression of the Ndi1 protein in the mitochondria of all regions of retinal ganglion cells and axons by delivering the NDI1 gene into the optical layer of the superior colliculus. Remarkably, even after the vision of the rats was severely impaired, treatment of the animals with the NDI1 gene led to a complete restoration of the vision to the normal level. Control groups that received either empty vector or the GFP gene had no effects
Protection by the NDI1 Gene against Neurodegeneration in a Rotenone Rat Model of Parkinson's Disease
It is widely recognized that mitochondrial dysfunction, most notably defects in the NADH-quinone oxidoreductase (complex I), is closely related to the etiology of sporadic Parkinson's disease (PD). In fact, rotenone, a complex I inhibitor, has been used for establishing PD models both in vitro and in vivo. A rat model with chronic rotenone exposure seems to reproduce pathophysiological conditions of PD more closely than acute mouse models as manifested by neuronal cell death in the substantia nigra and Lewy body-like cytosolic aggregations. Using the rotenone rat model, we investigated the protective effects of alternative NADH dehydrogenase (Ndi1) which we previously demonstrated to act as a replacement for complex I both in vitro and in vivo. A single, unilateral injection of recombinant adeno-associated virus carrying the NDI1 gene into the vicinity of the substantia nigra resulted in expression of the Ndi1 protein in the entire substantia nigra of that side. It was clear that the introduction of the Ndi1 protein in the substantia nigra rendered resistance to the deleterious effects caused by rotenone exposure as assessed by the levels of tyrosine hydroxylase and dopamine. The presence of the Ndi1 protein also prevented cell death and oxidative damage to DNA in dopaminergic neurons observed in rotenone-treated rats. Unilateral protection also led to uni-directional rotation of the rotenone-exposed rats in the behavioral test. The present study shows, for the first time, the powerful neuroprotective effect offered by the Ndi1 enzyme in a rotenone rat model of PD
black hole at N=2 supergravity
In this paper, we consider the charged non-extremal black hole at five
dimensional N = 2 supergravity. We study thermodynamics of AdS_{5} black hole
with three equal charges (q_{1} = q_{2} = q_{3} = q). We obtain Schrodinger
like equation and discuss the effective potential. Then, we consider the case
of the perturbed dilaton field background and find presence of odd coefficients
of the wave function. Also we find that the higher derivative corrections have
no effect on the first and second even coefficients of the wave function.Comment: 17 pages, 4 figures. Published versio
Bridging Time Scales in Cellular Decision Making with a Stochastic Bistable Switch
Cellular transformations which involve a significant phenotypical change of
the cell's state use bistable biochemical switches as underlying decision
systems. In this work, we aim at linking cellular decisions taking place on a
time scale of years to decades with the biochemical dynamics in signal
transduction and gene regulation, occuring on a time scale of minutes to hours.
We show that a stochastic bistable switch forms a viable biochemical mechanism
to implement decision processes on long time scales. As a case study, the
mechanism is applied to model the initiation of follicle growth in mammalian
ovaries, where the physiological time scale of follicle pool depletion is on
the order of the organism's lifespan. We construct a simple mathematical model
for this process based on experimental evidence for the involved genetic
mechanisms. Despite the underlying stochasticity, the proposed mechanism turns
out to yield reliable behavior in large populations of cells subject to the
considered decision process. Our model explains how the physiological time
constant may emerge from the intrinsic stochasticity of the underlying gene
regulatory network. Apart from ovarian follicles, the proposed mechanism may
also be of relevance for other physiological systems where cells take binary
decisions over a long time scale.Comment: 14 pages, 4 figure
- …