Nurse rock microclimates significantly buffer exposure to freezing T temperature and moderate summer temperature

Nurse tree canopies mitigate exposure to freezing temperatures that could result in injury or mortality to the saguaro cactus (Carnegiea gigantea). Abiotic objects have been hypothesized to provide similar beneficial microclimates. We used data loggers at 11 nurse rock sites to record daily daytime summer maximum and winter nighttime minimum temperatures at Saguaro National Park, Arizona, to examine the effectiveness of rocks to moderate seasonal temperature extremes in the microclimate. Temperatures at rock sites averaged 2 °C warmer than exposed open control sites in winter. We found that the efficiency of rocks to act as insulators significantly increased as temperature at control sites decreased, consistent with studies of tree canopies, and that the insulation effect lasted throughout the night. In summer, rocks reduced exposure to maximum temperatures but did not offer significantly more cooling at higher temperatures. Our results suggest that the protection from freezing temperature offered by rocks in winter is more ecologically beneficial to the saguaro than extreme temperature amelioration during summer in the cold-limited frontiers of the species’ range

A longitudinal study of Sin Nombre virus prevalence in rodents, southeastern Arizona.

We determined the prevalence of Sin Nombre virus antibodies in small mammals in southeastern Arizona. Of 1,234 rodents (from 13 species) captured each month from May through December 1995, only mice in the genus Peromyscus were seropositive. Antibody prevalence was 14.3% in 21 white-footed mice (P. leucopus), 13.3% in 98 brush mice (P. boylii), 0.8% in 118 cactus mice (P. eremicus), and 0% in 2 deer mice (P. maniculatus). Most antibody-positive mice were adult male Peromyscus captured close to one another early in the study. Population dynamics of brush mice suggest a correlation between population size and hantavirus-antibody prevalence

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Adding 6 months of androgen deprivation therapy to postoperative radiotherapy for prostate cancer: a comparison of short-course versus no androgen deprivation therapy in the RADICALS-HD randomised controlled trial

Background Previous evidence indicates that adjuvant, short-course androgen deprivation therapy (ADT) improves metastasis-free survival when given with primary radiotherapy for intermediate-risk and high-risk localised prostate cancer. However, the value of ADT with postoperative radiotherapy after radical prostatectomy is unclear. Methods RADICALS-HD was an international randomised controlled trial to test the efficacy of ADT used in combination with postoperative radiotherapy for prostate cancer. Key eligibility criteria were indication for radiotherapy after radical prostatectomy for prostate cancer, prostate-specific antigen less than 5 ng/mL, absence of metastatic disease, and written consent. Participants were randomly assigned (1:1) to radiotherapy alone (no ADT) or radiotherapy with 6 months of ADT (short-course ADT), using monthly subcutaneous gonadotropin-releasing hormone analogue injections, daily oral bicalutamide monotherapy 150 mg, or monthly subcutaneous degarelix. Randomisation was done centrally through minimisation with a random element, stratified by Gleason score, positive margins, radiotherapy timing, planned radiotherapy schedule, and planned type of ADT, in a computerised system. The allocated treatment was not masked. The primary outcome measure was metastasis-free survival, defined as distant metastasis arising from prostate cancer or death from any cause. Standard survival analysis methods were used, accounting for randomisation stratification factors. The trial had 80% power with two-sided α of 5% to detect an absolute increase in 10-year metastasis-free survival from 80% to 86% (hazard ratio [HR] 0·67). Analyses followed the intention-to-treat principle. The trial is registered with the ISRCTN registry, ISRCTN40814031, and ClinicalTrials.gov, NCT00541047. Findings Between Nov 22, 2007, and June 29, 2015, 1480 patients (median age 66 years [IQR 61–69]) were randomly assigned to receive no ADT (n=737) or short-course ADT (n=743) in addition to postoperative radiotherapy at 121 centres in Canada, Denmark, Ireland, and the UK. With a median follow-up of 9·0 years (IQR 7·1–10·1), metastasis-free survival events were reported for 268 participants (142 in the no ADT group and 126 in the short-course ADT group; HR 0·886 [95% CI 0·688–1·140], p=0·35). 10-year metastasis-free survival was 79·2% (95% CI 75·4–82·5) in the no ADT group and 80·4% (76·6–83·6) in the short-course ADT group. Toxicity of grade 3 or higher was reported for 121 (17%) of 737 participants in the no ADT group and 100 (14%) of 743 in the short-course ADT group (p=0·15), with no treatment-related deaths. Interpretation Metastatic disease is uncommon following postoperative bed radiotherapy after radical prostatectomy. Adding 6 months of ADT to this radiotherapy did not improve metastasis-free survival compared with no ADT. These findings do not support the use of short-course ADT with postoperative radiotherapy in this patient population

Duration of androgen deprivation therapy with postoperative radiotherapy for prostate cancer: a comparison of long-course versus short-course androgen deprivation therapy in the RADICALS-HD randomised trial

Background Previous evidence supports androgen deprivation therapy (ADT) with primary radiotherapy as initial treatment for intermediate-risk and high-risk localised prostate cancer. However, the use and optimal duration of ADT with postoperative radiotherapy after radical prostatectomy remains uncertain. Methods RADICALS-HD was a randomised controlled trial of ADT duration within the RADICALS protocol. Here, we report on the comparison of short-course versus long-course ADT. Key eligibility criteria were indication for radiotherapy after previous radical prostatectomy for prostate cancer, prostate-specific antigen less than 5 ng/mL, absence of metastatic disease, and written consent. Participants were randomly assigned (1:1) to add 6 months of ADT (short-course ADT) or 24 months of ADT (long-course ADT) to radiotherapy, using subcutaneous gonadotrophin-releasing hormone analogue (monthly in the short-course ADT group and 3-monthly in the long-course ADT group), daily oral bicalutamide monotherapy 150 mg, or monthly subcutaneous degarelix. Randomisation was done centrally through minimisation with a random element, stratified by Gleason score, positive margins, radiotherapy timing, planned radiotherapy schedule, and planned type of ADT, in a computerised system. The allocated treatment was not masked. The primary outcome measure was metastasis-free survival, defined as metastasis arising from prostate cancer or death from any cause. The comparison had more than 80% power with two-sided α of 5% to detect an absolute increase in 10-year metastasis-free survival from 75% to 81% (hazard ratio [HR] 0·72). Standard time-to-event analyses were used. Analyses followed intention-to-treat principle. The trial is registered with the ISRCTN registry, ISRCTN40814031, and ClinicalTrials.gov , NCT00541047 . Findings Between Jan 30, 2008, and July 7, 2015, 1523 patients (median age 65 years, IQR 60–69) were randomly assigned to receive short-course ADT (n=761) or long-course ADT (n=762) in addition to postoperative radiotherapy at 138 centres in Canada, Denmark, Ireland, and the UK. With a median follow-up of 8·9 years (7·0–10·0), 313 metastasis-free survival events were reported overall (174 in the short-course ADT group and 139 in the long-course ADT group; HR 0·773 [95% CI 0·612–0·975]; p=0·029). 10-year metastasis-free survival was 71·9% (95% CI 67·6–75·7) in the short-course ADT group and 78·1% (74·2–81·5) in the long-course ADT group. Toxicity of grade 3 or higher was reported for 105 (14%) of 753 participants in the short-course ADT group and 142 (19%) of 757 participants in the long-course ADT group (p=0·025), with no treatment-related deaths. Interpretation Compared with adding 6 months of ADT, adding 24 months of ADT improved metastasis-free survival in people receiving postoperative radiotherapy. For individuals who can accept the additional duration of adverse effects, long-course ADT should be offered with postoperative radiotherapy. Funding Cancer Research UK, UK Research and Innovation (formerly Medical Research Council), and Canadian Cancer Society

Nurse rock microclimates significantly buffer exposure to freezing T temperature and moderate summer temperature

Nurse tree canopies mitigate exposure to freezing temperatures that could result in injury or mortality to the saguaro cactus (Carnegiea gigantea). Abiotic objects have been hypothesized to provide similar beneficial microclimates. We used data loggers at 11 nurse rock sites to record daily daytime summer maximum and winter nighttime minimum temperatures at Saguaro National Park, Arizona, to examine the effectiveness of rocks to moderate seasonal temperature extremes in the microclimate. Temperatures at rock sites averaged 2 °C warmer than exposed open control sites in winter. We found that the efficiency of rocks to act as insulators significantly increased as temperature at control sites decreased, consistent with studies of tree canopies, and that the insulation effect lasted throughout the night. In summer, rocks reduced exposure to maximum temperatures but did not offer significantly more cooling at higher temperatures. Our results suggest that the protection from freezing temperature offered by rocks in winter is more ecologically beneficial to the saguaro than extreme temperature amelioration during summer in the cold-limited frontiers of the species’ range

Estimating Annual Vertebrate Mortality on Roads at Saguaro National Park, Arizona

Road-killed vertebrates are a conspicuous effect of roads on animals, particularly in natural preserves where wildlife is protected. Knowledge of the number of vertebrates killed by vehicles in a national park or other natural area is important for managers, but these numbers are difficult to estimate because such mortality patterns vary greatly in space and time and by taxonomic group. Additionally, animals killed by vehicles may be difficult to observe, particularly during driving surveys, and carcasses may not persist between surveys due to scavenging and other factors. We modified an estimator previously developed for determining bird mortality at wind turbines to estimate the average annual number of vertebrates killed by cars on roads within and along the boundary of Saguaro National Park, Tucson, Arizona. Our model incorporates estimates of carcass (hereafter, roadkill) persistence and detectability (determined, respectively, by conducting surveys on 8 consecutive days and by comparing simultaneous walking and driving surveys) with data from regular roadkill surveys conducted throughout the park over a 6-year period. Using this model, we estimated that an average of 29,377 (SE 6,807) vertebrates (approximately 1.1/km/day; SE 0.24) were killed annually during 1994 to 1999 on 76.6 km of roads associated with the park. The majority of killed animals were amphibians and small reptiles, but birds and mammals also were killed in large numbers. The amount of wildlife killed in and near reserves by vehicles may be higher than appreciated by many managers and should be factored into within-park and regional transportation planning

Hydrologic variability governs population dynamics of a vulnerable amphibian in an arid environment.

Dynamics of many amphibian populations are governed by the distribution and availability of water. Therefore, understanding the hydrological mechanisms that explain spatial and temporal variation in occupancy and abundance will improve our ability to conserve and recover populations of vulnerable amphibians. We used 16 years of survey data from intermittent mountain streams in the Sonoran Desert to evaluate how availability of surface water affected survival and adult recruitment of a threatened amphibian, the lowland leopard frog (Lithobates yavapaiensis). Across the entire study period, monthly survival of adults ranged from 0.72 to 0.99 during summer and 0.59 to 0.94 during winter and increased with availability of surface water (Z = 7.66; P < 0.01). Recruitment of frogs into the adult age class occurred primarily during winter and ranged from 1.9 to 3.8 individuals/season/pool; like survival, recruitment increased with availability of surface water (Z = 3.67; P < 0.01). Although abundance of frogs varied across seasons and years, we found no evidence of a systematic trend during the 16-year study period. Given the strong influence of surface water on population dynamics of leopard frogs, conservation of many riparian obligates in this and similar arid regions likely depends critically on minimizing threats to structures and ecosystem processes that maintain surface waters. Understanding the influence of surface-water availability on riparian organisms is particularly important because climate change is likely to decrease precipitation and increase ambient temperatures in desert riparian systems, both of which have the potential to alter fundamentally the hydrology of these systems

Model for estimating wildlife mortality on roads and its implication for mitigation and management

Project funding: National Park Service/Saguaro National Park Total funds: $50,000 Project Period: 1994-2001 In an attempt to understand the effects that roads were having on wildlife in Saguaro National Park, weekly wildlife mortality surveys were conducted from 1994-1999. From our survey data and additional data collected on scavenging rates, observer error and episodic weather events, we developed a model to estimate the average annual number of animals killed on roads in and adjacent to the Park. This model accounts for variables (i.e., observer error, scavenging, episodic events, and taxonomic differences in activity periods) that we knew existed and affected the accuracy of our weekly survey data. Developing the model required us to identify all relevant parameters to consider/measure when designing road mortality studies; thus, it has implications for future studies. Our model is very conservative in that it underestimates all variables and it does not account for animals that are hit and killed off the road. Based on our model, we estimate that about 22,000 animals are killed on the 50 miles of roads that lie in or adjacent to both districts of Saguaro National Park, including about 6,000 toads, 7,000 lizards, 1,400 snakes, 1,400 birds and 6,000 mammals. The implications of these numbers to local wildlife populations varies, but seem to be impacting some species (i.e., the Colorado River toad) at a population level. Along with spatial analysis of the data, these figures enabled us to identify locations and types of mitigation that might be most useful to wildlife in the Park

Model for estimating wildlife mortality on roads and its implication for mitigation and management

Project funding: National Park Service/Saguaro National Park Total funds: $50,000 Project Period: 1994-2001 In an attempt to understand the effects that roads were having on wildlife in Saguaro National Park, weekly wildlife mortality surveys were conducted from 1994-1999. From our survey data and additional data collected on scavenging rates, observer error and episodic weather events, we developed a model to estimate the average annual number of animals killed on roads in and adjacent to the Park. This model accounts for variables (i.e., observer error, scavenging, episodic events, and taxonomic differences in activity periods) that we knew existed and affected the accuracy of our weekly survey data. Developing the model required us to identify all relevant parameters to consider/measure when designing road mortality studies; thus, it has implications for future studies. Our model is very conservative in that it underestimates all variables and it does not account for animals that are hit and killed off the road. Based on our model, we estimate that about 22,000 animals are killed on the 50 miles of roads that lie in or adjacent to both districts of Saguaro National Park, including about 6,000 toads, 7,000 lizards, 1,400 snakes, 1,400 birds and 6,000 mammals. The implications of these numbers to local wildlife populations varies, but seem to be impacting some species (i.e., the Colorado River toad) at a population level. Along with spatial analysis of the data, these figures enabled us to identify locations and types of mitigation that might be most useful to wildlife in the Park