Zonal Soil Type Determines Soil Microbial Responses to Maize Cropping and Fertilization.

Soil types heavily influence ecological dynamics. It remains controversial to what extent soil types shape microbial responses to land management changes, largely due to lack of in-depth comparison across various soil types. Here, we collected samples from three major zonal soil types spanning from cold temperate to subtropical climate zones. We examined bacterial and fungal community structures, as well as microbial functional genes. Different soil types had distinct microbial biomass levels and community compositions. Five years of maize cropping (growing corn or maize) changed the bacterial community composition of the Ultisol soil type and the fungal composition of the Mollisol soil type but had little effect on the microbial composition of the Inceptisol soil type. Meanwhile, 5 years of fertilization resulted in soil acidification. Microbial compositions of the Mollisol and Ultisol, but not the Inceptisol, were changed and correlated (P < 0.05) with soil pH. These results demonstrated the critical role of soil type in determining microbial responses to land management changes. We also found that soil nitrification potentials correlated with the total abundance of nitrifiers and that soil heterotrophic respiration correlated with the total abundance of carbon degradation genes, suggesting that changes in microbial community structure had altered ecosystem processes. IMPORTANCE Microbial communities are essential drivers of soil functional processes such as nitrification and heterotrophic respiration. Although there is initial evidence revealing the importance of soil type in shaping microbial communities, there has been no in-depth, comprehensive survey to robustly establish it as a major determinant of microbial community composition, functional gene structure, or ecosystem functioning. We examined bacterial and fungal community structures using Illumina sequencing, microbial functional genes using GeoChip, microbial biomass using phospholipid fatty acid analysis, as well as functional processes of soil nitrification potential and CO2 efflux. We demonstrated the critical role of soil type in determining microbial responses to land use changes at the continental level. Our findings underscore the inherent difficulty in generalizing ecosystem responses across landscapes and suggest that assessments of community feedback must take soil types into consideration. Author Video: An author video summary of this article is available

Tolerance of transgenic Arabidopsis thaliana overexpressing apple MdAGO4.1 gene to drought and salt stress

The regulatory role of apple MdAGO4.1 gene in plant drought and salt resistance is unclear. In this study, transgenic A. thaliana in which the apple MdAGO4.1 gene was over-expressed was used to analyze the regulatory effects of the MdAGO4.1 gene on plant drought and salt resistance, to verify the function of the apple MdAGO4.1 gene. The seed germination rate, seedling fresh weight and root length of transgenic Arabidopsis strains in MS medium containing different concentrations of NaCl and mannitol were better than those of the wild type. The transgenic A. thaliana seedlings were more resistant to drought than wild type under drought stress. The transgenic strains were less affected by salt stress than thewild type. Exposure to drought and salt stress reduced the relative elektrolyte leakage, malondialdehyde (MDA), superoxide anion (O2-), and hydrogen peroxide (H2O2) levels of the transgenic strain significantly compared with the levels in the wild type. The levels of proline, protective enzyme activities, and the expression of genes related to drought and salt stress resistance were significantly higher than those of the wild type. These results indicate that MdAGO4.1 overexpression improved drought and salt tolerance in transgenic Arabidopsis. This study can provide a theoretical basis for future research on stress tolerance mechanisms and breeding new varieties of fruit trees resistant to drought and salt

Distinct Biogeography of Different Fungal Guilds and Their Associations With Plant Species Richness in Forest Ecosystems

Plant pathogens are increasingly considered as important agents in promoting plant coexistence, while plant symbionts like ectomycorrhizal fungi (EMF) can facilitate plant dominance by helping conspecific individuals to defend against plant pathogens. However, we know little about their relationships with plants at large scales. Here, using soil fungal data collected from 28 forest reserves across China, we explored the latitudinal diversity gradients of overall fungi and different fungal functional guilds, including putative plant pathogens, EMF, and saprotrophic fungi. We further linked the spatial patterns of alpha diversities of putative plant pathogens and EMF to the variation of plant species richness. We found that the relationships between latitude and alpha diversities of putative plant pathogens and EMF were region-dependent with sharp diversity shifts around the mid-latitude (similar to 35 degrees N), which differed from the unimodal diversity distributions of the overall and saprotrophic fungi. The variations in the diversities of putative plant pathogens and EMF were largely explained by the spatial regions (south vs. north/subtropical zone vs. temperate zone). Additionally, the alpha diversities of these two fungal guilds exhibited opposing trends across latitude. EMF could alter the relationship between diversities of putative plant pathogens and plants in the south/subtropical region, but not vice versa. We also found that the ratio of their alpha diversities (EMF to putative plant pathogens) was negatively related to plant species richness across the spatial regions (north to south), and explained similar to 10% of the variation of plant species richness. Overall, our findings suggest that plant-microbe interactions not only shape the local plant diversity but also may have non-negligible contributions to the large-scale patterns of plant diversity in forest ecosystems.National Natural Science Foundation of China [31600403, 31800422, 41673111, U1501232, 41622106]; Natural Science Foundation of Guangdong Province, China [2016A030312003]; U.S. National Science Foundation MacroSystems Biology program [NSF EF-1065844]; Candidates at Sun Yat-Sen UniversityOpen access journalThis item from the UA Faculty Publications collection is made available by the University of Arizona with support from the University of Arizona Libraries. If you have questions, please contact us at [email protected]

Using the water quality index (WQI), and the synthetic pollution index (SPI) to evaluate the groundwater quality for drinking purpose in Hailun, China

Due to the impact of human agricultural production, climate and environmental changes. The applicability of groundwater for drinking purposes has attracted widespread attention. In order to quantify the hydrochemical characteristics of groundwater in Hailun and evaluate its suitability for assessing water for drinking purposes, 77 shallow groundwater samples and 57 deep groundwater samples were collected and analyzed. The results show that deep groundwater in aquifers in the study area is weakly alkaline, while that in shallow is acidic. The abundance is in the order HCO3 - > Cl- > SO4 2- for anions, and Ca2+> Na+> Mg2+ for cations. Groundwater chemical type were dominated by HCO3 -Ca, HCO3 -Ca• Mg, and HCO3 -Ca• Na. Correlation analysis (CA) and Durov diagram showed that rock weathering and dissolution, human activities, and the hydraulic connection between shallow and deep water are the main reasons affecting the chemical composition of water in Helen. The analysis of water samples based on the WQI model showed that about 23.37, 23.37, 32.46, 12.98, and 7.79% of the shallow groundwater samples were excellent, good, poor, very poor, and unsuitable for drinking purposes, respectively, and that 61.40, 30.90, 5.26, 1.75, and 1.75% of the deep groundwater samples were excellent, good, poor, very poor, and unsuitable for drinking purposes, respectively. The analysis of groundwater samples based on the SPI model showed that 92.98% of the deep groundwater samples were suitable grade, while that 40.25% of the shallow groundwater samples were suitable grade. The spatial distribution maps of the WQI and SPI show that most of the deep groundwater resources in the study area are clean and suitable for drinking, despite the risks of the shallow groundwater in the north and southwest of the study area

Microbial Electricity Generation Enhances Decabromodiphenyl Ether (BDE-209) Degradation

We thank Hao Yu and Ye Deng at the University of Oklahoma for assistance with GeoChip hybridization and data pre-processing. We also thank Professor Bixian Mai and Dr. Leheng Yu in Guangzhou Institute of Geochemistry, CAS, for their helps in PBDE congener analyses.Conceived and designed the experiments: MYX JG GPS. Performed the experiments: YGY MYX. Analyzed the data: MYX YGY. Contributed reagents/materials/analysis tools: ZLH JZZ. Wrote the paper: MYX YGY ZLH.Due to environmental persistence and biotoxicity of polybrominated diphenyl ethers (PBDEs), it is urgent to develop potential technologies to remediate PBDEs. Introducing electrodes for microbial electricity generation to stimulate the anaerobic degradation of organic pollutants is highly promising for bioremediation. However, it is still not clear whether the degradation of PBDEs could be promoted by this strategy. In this study, we hypothesized that the degradation of PBDEs (e.g., BDE-209) would be enhanced under microbial electricity generation condition. The functional compositions and structures of microbial communities in closed-circuit microbial fuel cell (c-MFC) and open-circuit microbial fuel cell (o-MFC) systems for BDE-209 degradation were detected by a comprehensive functional gene array, GeoChip 4.0, and linked with PBDE degradations. The results indicated that distinctly different microbial community structures were formed between c-MFCs and o-MFCs, and that lower concentrations of BDE-209 and the resulting lower brominated PBDE products were detected in c-MFCs after 70-day performance. The diversity and abundance of a variety of functional genes in c-MFCs were significantly higher than those in o-MFCs. Most genes involved in chlorinated solvent reductive dechlorination, hydroxylation, methoxylation and aromatic hydrocarbon degradation were highly enriched in c-MFCs and significantly positively correlated with the removal of PBDEs. Various other microbial functional genes for carbon, nitrogen, phosphorus and sulfur cycling, as well as energy transformation process, were also significantly increased in c-MFCs. Together, these results suggest that PBDE degradation could be enhanced by introducing the electrodes for microbial electricity generation and by specifically stimulating microbial functional genes.Yeshttp://www.plosone.org/static/editorial#pee

Microbial responses to inorganic nutrient amendment overridden by warming: Consequences on soil carbon stability.

Eutrophication and climate warming, induced by anthropogenic activities, are simultaneously occurring worldwide and jointly affecting soil carbon stability. Therefore, it is of great interest to examine whether and how they interactively affect soil microbial community, a major soil carbon driver. Here, we showed that climate warming, simulated by southward transferring Mollisol soil in agricultural ecosystems from the cold temperate climate zone (N) to warm temperate climate (C) and subtropical climate zone (S), decreased soil organic matter (SOM) by 6%-12%. In contrast, amendment with nitrogen, phosphorus and potassium enhanced plant biomass by 97% and SOM by 6% at the N site, thus stimulating copiotrophic taxa but reducing oligotrophic taxa in relative abundance. However, microbial responses to nutrient amendment were overridden by soil transfer in that nutrient amendment had little effect at the C site but increased recalcitrant carbon-degrading fungal Agaricomycetes and Microbotryomycetes taxa derived from Basidiomycota by 4-17 folds and recalcitrant carbon-degrading genes by 23%-40% at the S site, implying a possible priming effect. Consequently, SOM at the S site was not increased by nutrient amendment despite increased plant biomass by 108%. Collectively, we demonstrate that soil transfer to warmer regions overrides microbial responses to nutrient amendment and weakens soil carbon sequestration

All-Inorganic Colloidal Perovskite Quantum Dots: A New Class of Lasing Materials with Favorable Characteristics

I), which were very recently reported as a high effi ciency luminescent materials. The CsPbX 3 IPQDs adopted here were fabricated following a recipe slightly modifi ed from the literature (see details in Experimental Section). Here, we present a new class of lasing materials with outstanding optical gain signatures of combined advantages of both QDs and halide perovskites: the colloidal all-inorganic cesium lead halide perovskite QDs (IPQDs) (CsPbX 3 , X = Cl, Br, Adv. Mater. 2015

Relative increases in CH4 and CO2 emissions from wetlands under global warming dependent on soil carbon substrates

15 páginas.- 3 figuras.- 57 referencias.- Supplementary information The online version contains supplementary material available at https://doi.org/10.1038/s41561-023-01345-6Compelling evidence has shown that wetland methane emissions are more temperature dependent than carbon dioxide emissions across diverse hydrologic conditions. However, the availability of carbon substrates, which ultimately determines microbial carbon metabolism, has not been adequately accounted for. By combining a global database and a continental-scale experimental study, we showed that differences in the temperature dependence of global wetland methane and carbon dioxide emissions (EM/C) were dependent on soil carbon-to-nitrogen stoichiometry. This can be explained mainly by the positive relationship between soil organic matter decomposability and EM/C. Our study indicates that only 23% of global wetlands will decrease methane relative to carbon dioxide emissions under future warming scenarios when soil organic matter decomposability is considered. Our findings highlight the importance of incorporating soil organic matter biodegradability into model predictions of wetland carbon–climate feedback.The authors received funding from Strategic Priority Research Program of the Chinese Academy of Sciences (XDA28030102 to Y.L.), National Natural Scientific Foundation of China (92251305 to M.N., 41622104 to Y.L.), Innovation Program of the Institute of Soil Science (ISSASIP2201 to Y.L.) and Youth Innovation Promotion Association of the Chinese Academy of Sciences (2016284 to Y.L.).Peer reviewe

Assessing the Microbial Community and Functional Genes in a Vertical Soil Profile with Long-Term Arsenic Contamination

Conceived and designed the experiments: GW. Performed the experiments: JX GL. Analyzed the data: JX JZ GW. Contributed reagents/materials/analysis tools: ST JZ GW. Wrote the paper: JX ZH JDVN JZ GW.Arsenic (As) contamination in soil and groundwater has become a serious problem to public health. To examine how microbial communities and functional genes respond to long-term arsenic contamination in vertical soil profile, soil samples were collected from the surface to the depth of 4 m (with an interval of 1 m) after 16-year arsenic downward infiltration. Integrating BioLog and functional gene microarray (GeoChip 3.0) technologies, we showed that microbial metabolic potential and diversity substantially decreased, and community structure was markedly distinct along the depth. Variations in microbial community functional genes, including genes responsible for As resistance, carbon and nitrogen cycling, phosphorus utilization and cytochrome c oxidases were detected. In particular, changes in community structures and activities were correlated with the biogeochemical features along the vertical soil profile when using the rbcL and nifH genes as biomarkers, evident for a gradual transition from aerobic to anaerobic lifestyles. The C/N showed marginally significant correlations with arsenic resistance (p = 0.069) and carbon cycling genes (p = 0.073), and significant correlation with nitrogen fixation genes (p = 0.024). The combination of C/N, NO3− and P showed the highest correlation (r = 0.779, p = 0.062) with the microbial community structure. Contradict to our hypotheses, a long-term arsenic downward infiltration was not the primary factor, while the spatial isolation and nutrient availability were the key forces in shaping the community structure. This study provides new insights about the heterogeneity of microbial community metabolic potential and future biodiversity preservation for arsenic bioremediation management.Yeshttp://www.plosone.org/static/editorial#pee