CLEARER: a new tool for the analysis of X-ray fibre diffraction patterns and diffraction simulation from atomic structural models

Fibre diffraction can provide structural information about polymers and biopolymers that is unobtainable using other methods. This method has been used to elucidate the structures of many polymers, biopolymers and protein assemblies. Extracting structural information from fibre diffraction patterns is a major challenge. A computer program called CLEARER has been developed that aids the detailed analysis of polycrystalline fibre diffraction patterns. It offers an easy-to-use interface that enables diffraction data processing, analysis and simulation of diffraction patterns. It is likely to be applicable to structural determination for a wide range of polymeric fibrous materials. CLEARER simplifies and speeds up the data analysis process and helps to utilize all of the structural information present in the analysed X-ray and electron diffraction patterns

The relation between hemispheric lateralisation and measures of immune competence and adherence in Human Immunodeficiency Virus Type 1 (HIV-1)

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited - Copyright © 2012 Sumner et al

The effect of degrading the auditory signal on the ability to locate a talking face

Recent evidence from Alsius and Soto-Faraco (2011) suggests that selective attention is required to locate a talking face in a multi-talker array, seemingly in contrast to previous claims that the integration of faces and voices is preattentive (McGurk and MacDonald, 1976). The current study investigated what effect degrading the auditory signal has on the ability to locate a talking face. Twenty participants were presented with between 2 and 4 moving faces, each of which was articulating a different sentence. The task was to decide, as quickly as possible, which of these faces matched the auditory sentence that they heard at the same time. The results showed that in the least demanding auditory condition (clear speech in quiet), increasing the number of faces on screen did not increase visual search times. However, when speech was presented in background noise or was processed to simulate the information provided by a cochlear implant (‘sine-wave vocoded speech’), search times increased as the number of faces increased even though intelligibility of the sentences was unchanged. The results suggest that under conditions of low perceptual load it is possible for audiovisual correspondence to ‘pop out’, but if perceptual load is increased then selective attention is required to bind faces and voices

FeH Absorption in the Near-Infrared Spectra of Late M and L Dwarfs

We present medium-resolution z-, J-, and H-band spectra of four late-type dwarfs with spectral types ranging from M8 to L7.5. In an attempt to determine the origin of numerous weak absorption features throughout their near-infrared spectra, and motivated by the recent tentative identification of the E 4\Pi- A ^4\Pi system of FeH near 1.6 microns in umbral and cool star spectra, we have compared the dwarf spectra to a laboratory FeH emission spectrum. We have identified nearly 100 FeH absorption features in the z-, J-, and H-band spectra of the dwarfs. In particular, we have identified 34 features which dominate the appearance of the H-band spectra of the dwarfs and which appear in the laboratory FeH spectrum. Finally, all of the features are either weaker or absent in the spectrum of the L7.5 dwarf which is consistent with the weakening of the known FeH bandheads in the spectra of the latest L dwarfs.Comment: accepted by Ap

Vaccinia virus immune evasion: mechanisms, virulence and immunogenicity

Virus infection of mammalian cells is sensed by pattern recognition receptors and leads to an innate immune response that restricts virus replication and induces adaptive immunity. In response, viruses have evolved many countermeasures that enable them to replicate and be transmitted to new hosts, despite the host innate immune response. Poxviruses, such as vaccinia virus (VACV), have large DNA genomes and encode many proteins that are dedicated to host immune evasion. Some of these proteins are secreted from the infected cell, where they bind and neutralize complement factors, interferons, cytokines and chemokines. Other VACV proteins function inside cells to inhibit apoptosis or signalling pathways that lead to the production of interferons and pro-inflammatory cytokines and chemokines. In this review, these VACV immunomodulatory proteins are described and the potential to create more immunogenic VACV strains by manipulation of the gene encoding these proteins is discussed

Gamma-Ray Burst and Relativistic Shells: The Surface Filling Factor

The variability observed in many complex gamma-ray bursts (GRBs) is inconsistent with causally connected variations in a single, symmetric, relativistic shell interacting with the ambient material ("external shocks"). Rather, the symmetry of the shell must be broken on an angular scale much smaller than Gamma^{-1} where Gamma is the bulk Lorentz factor for the shell. The observed variability in the external shock models arises from the number of causally connected regions that (randomly) become active. We define the "surface filling factor" to be the ratio of the area of causally connected regions that become active to the observable area of the shell. From the observed variability in 52 BATSE bursts, we estimate the surface filling factor to be typically 0.005 although some values are near unity. We find that the surface filling factor is about 0.1 Delta T/T in both the constant Gamma phase (which probably produces the GRB) and the deaccelerating phase (which probably produces the x-ray afterglows). Here, \Delta T is a typical time scale of variability and T is the time since the initial signal. We analyze the 2 hr flare seen by ASCA 36 hr after the GRB and conclude that the surface filling factor must be small (0.001) in the x-ray afterglow phase as well. Explanations for low surface filling factor can either require more or less energy (by a factor of about 1000) compared to that expected for a symmetric shell.Comment: 26 pages, 5 embedded figures, Latex, revised version as in press, ApJ, added figure to show the possible expanding shell geometries that can give low filling facto

Operation of a 1-Liter-Volume Gaseous Argon Scintillation Counter

We have built a gas-phase argon ionization detector to measure small nuclear recoil energies (< 10 keVee). In this paper, we describe the detector response to X-ray and gamma calibration sources, including analysis of pulse shapes, software triggers, optimization of gas content, and energy- and position-dependence of the signal. We compare our experimental results against simulation using a 5.9-keV X-ray source, as well as higher-energy gamma sources up to 1332 keV. We conclude with a description of the detector, DAQ, and software settings optimized for a measurement of the low-energy nuclear quenching factor in gaseous argon. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory in part under Contract W-7405-Eng-48 and in part under Contract DE-AC52-07NA27344. Funded by Lab-wide LDRD. LLNL-JRNL-415990-DRAFT.Comment: 29 pages, single-column, double-spaced, 21 figure

UK science press officers, professional vision and the generation of expectations

Science press officers can play an integral role in helping promote expectations and hype about biomedical research. Using this as a starting point, this article draws on interviews with 10 UK-based science press officers, which explored how they view their role as science reporters and as generators of expectations. Using Goodwin’s notion of ‘professional vision’, we argue that science press officers have a specific professional vision that shapes how they produce biomedical press releases, engage in promotion of biomedical research and make sense of hype. We discuss how these insights can contribute to the sociology of expectations, as well as inform responsible science communication.This project was funded by the Wellcome Trust (Wellcome Trust Biomedical Strategic Award 086034)

A 275–425-GHz Tunerless Waveguide Receiver Based on AlN-Barrier SIS Technology

We report on a 275–425-GHz tunerless waveguide receiver with a 3.5–8-GHz IF. As the mixing element, we employ a high-current-density Nb–AlN–Nb superconducting–insulating– superconducting (SIS) tunnel junction. Thanks to the combined use of AlN-barrier SIS technology and a broad bandwidth waveguide to thin-film microstrip transition, we are able to achieve an unprecedented 43% instantaneous bandwidth, limited by the receiver's corrugated feedhorn. The measured double-sideband (DSB) receiver noise temperature, uncorrected for optics loss, ranges from 55 K at 275 GHz, 48 K at 345 GHz, to 72 K at 425 GHz. In this frequency range, the mixer has a DSB conversion loss of 2.3 1 dB. The intrinsic mixer noise is found to vary between 17–19 K, of which 9 K is attributed to shot noise associated with leakage current below the gap. To improve reliability, the IF circuit and bias injection are entirely planar by design. The instrument was successfully installed at the Caltech Submillimeter Observatory (CSO), Mauna Kea, HI, in October 2006