61 research outputs found
Optimal design of water treatment processes
Predicted water shortages assign water treatment a leading role in improving water resources management. One of the main challenges associated with the processes remains early stage design of techno-economically optimised purification. This work addresses the current gap by undertaking a whole-system approach of flowsheet synthesis for the production of water at desired purity at minimum overall cost. The optimisation problem was formulated as a mixed-integer non-linear programming model. Two case studies were presented which incorporated the most common commercial technologies and the major pollution indicators, such as chemical oxygen demand, dissolved organic carbon, total suspended solids and total dissolved solids. The results were analysed and compared to existing guidelines in order to examine the applicability of the proposed approach
"Nested" cryptic diversity in a widespread marine ecosystem engineer: a challenge for detecting biological invasions
<p>Abstract</p> <p>Background</p> <p>Ecosystem engineers facilitate habitat formation and enhance biodiversity, but when they become invasive, they present a critical threat to native communities because they can drastically alter the receiving habitat. Management of such species thus needs to be a priority, but the poorly resolved taxonomy of many ecosystem engineers represents a major obstacle to correctly identifying them as being either native or introduced. We address this dilemma by studying the sea squirt <it>Pyura stolonifera</it>, an important ecosystem engineer that dominates coastal communities particularly in the southern hemisphere. Using DNA sequence data from four independently evolving loci, we aimed to determine levels of cryptic diversity, the invasive or native status of each regional population, and the most appropriate sampling design for identifying the geographic ranges of each evolutionary unit.</p> <p>Results</p> <p>Extensive sampling in Africa, Australasia and South America revealed the existence of "nested" levels of cryptic diversity, in which at least five distinct species can be further subdivided into smaller-scale genetic lineages. The ranges of several evolutionary units are limited by well-documented biogeographic disjunctions. Evidence for both cryptic native diversity and the existence of invasive populations allows us to considerably refine our view of the native versus introduced status of the evolutionary units within <it>Pyura stolonifera </it>in the different coastal communities they dominate.</p> <p>Conclusions</p> <p>This study illustrates the degree of taxonomic complexity that can exist within widespread species for which there is little taxonomic expertise, and it highlights the challenges involved in distinguishing between indigenous and introduced populations. The fact that multiple genetic lineages can be native to a single geographic region indicates that it is imperative to obtain samples from as many different habitat types and biotic zones as possible when attempting to identify the source region of a putative invader. "Nested" cryptic diversity, and the difficulties in correctly identifying invasive species that arise from it, represent a major challenge for managing biodiversity.</p
One step ATRP initiator immobilization on surfaces leading to gradient-grafted polymer brushes
Published: April 30, 2014A method is described that allows potentially any surface to be functionalized covalently with atom transfer radical polymerization (ATRP) initiators derived from ethyl-2-bromoisobutyrl bromide in a single step. In addition, the initiator surface density was variable and tunable such that the thickness of polymer chain grafted from the surface varied greatly on the surfaces providing examples, across the surface of a substrate, of increased chain stretching due to the entropic nature of crowded polymer chains leading toward polymer brushes. An initiator gradient of increasing surface density was deposited by plasma copolymerization of an ATRP initiator (ethyl 2-bromoisobutyrate) and a non-ATRP reactive diluent molecule (ethanol). The deposited plasma polymer retained its chemical ability to surface-initiate polymerization reactions as exemplified by N,N'-dimethyl acrylamide and poly(ethylene glycol) methyl ether methacrylate polymerizations, illustrating linear and bottle-brush-like chains, respectively. A large variation in graft thickness was observed from the low to high chain-density side suggesting that chains were forced to stretch away from the surface interface--a consequence of entropic effects resulting from increased surface crowding. The tert-butyl bromide group of ethyl 2-bromoisobutyrate is a commonly used initiator in ATRP, so a method for covalent linkage to any substrate in a single step desirably simplifies the multistep surface activation procedures currently used.Bryan R. Coad, Katie E. Styan, and Laurence Meaghe
A meandering hylje ∗
Abstract. Hawaiian monk seals (Monachus schauinslandi) are endemic to the Hawaiian Islands. The species has been declining for several decades and now numbers around 1300. A key hypothesis accounting for the decline is poor growth and survival of young seals owing to poor foraging success Consequently, data have been collected recently on the foraging habitats, movements, and behaviors of Hawaiian monk seals throughout the Hawaiian Islands Archipelago. Our work here is directed to exploring a data set located on the west side of the main Hawaiian Island of Molokai in our search for a stochastic model of a seal’s journey. The work proceeds by fitting a stochastic differential equation (SDE) that mimics some aspects of the behavior of seals by working with location data collected for one seal. The SDE is found by developing a potential function. The estimated times of locations are irregularly spaced and not close together leading to some difficulties of analysis and interpretation. Synthetic plots are generated to assess the reasonableness of the model and suggest departures from it
SU-8 photolithography on reactive plasma thin-films: Coated microwells for peptide display
We have developed a technique to create 50 \u3bcm-deep microwells coated with a reactive and robust thin film, which withstands photolithographic processing, and allows for subsequent chemical functionalisation with biological cues (i.e. peptides). First, plasma polymerisation of 1-bromopropane was used to generate a bromine-functionalised thin film (BrPP) on a substrate of silicon wafer. Second, an epoxy functionalised polymer UV photoresist, SU-8, was deposited and developed to create 50 \u3bcm-deep patterned microwells that display the BrPP coating at their base. Third, amino acids or peptides were selectively attached to the bottom of the microwells through bromine displacement by an amine or thiol nucleophile. Each surface functionalisation step was monitored by XPS, AFM, and contact angle measurements. These functionalities were then used as linkers to immobilise enzymes (e.g. HRP), which retain activity at the end of the process as shown by a biochemical activity assay. Peptide promoters of cell attachment were also immobilised and their functionality was evaluated using an L929 fibroblast adhesion assay. In conclusion, this work describes an innovative combination of plasma thin film deposition and photolithography to create 50 \u3bcm-deep functionalised microwells for peptide display in biological applications
Chirality effects at each amino acid position on tripeptide self-assembly into hydrogel biomaterials
9siHydrogels formed by ultrashort peptides are emerging as cost-effective materials for cell culture. However, L-peptides are labile to proteases, while their D-isomers are thought to not support cell growth as well. In contrast, the self-assembly behaviour and biological performance of heterochiral peptides (i.e., made of both D and L amino acids) are largely unknown. In this study, we evaluate the effects of amino acid chirality on tripeptide self-assembly and hydrogelation at physiological pH, and cytocompatibility in fibroblast cell culture. A series of uncapped hydrophobic tripeptides with all combinations of D, L amino acids was prepared, tested for self-assembly under physiological conditions, and analysed by circular dichroism, FT-IR, cryo-TEM, AFM, and Thioflavin T fluorescence imaging. Amino acid chirality has a profound effect on the peptides' supramolecular behaviour. Only selected isomers form hydrogels, and of amyloid structure, as confirmed by rheology and XRD. Importantly, they are able to maintain the viability and proliferation of fibroblasts in vitro. This study identifies two heterochiral gels that perform well in cell culture and will assist in the design of innovative and cost-effective peptide gel biomaterials.noneopenMarchesan, S.; Easton, C.D.; Styan, K.E.; Waddington, L.J.; Kushkaki, F.; Goodall, L.; Mclean, K.M.; Forsythe, J.S.; Hartley, P.G.Marchesan, Silvia; Easton, C. D.; Styan, K. E.; Waddington, L. J.; Kushkaki, F.; Goodall, L.; Mclean, K. M.; Forsythe, J. S.; Hartley, P. G
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