Concert recording 2013-03-24

[Track 01]. O had I Jubal\u27s lyre / George Frideric Handel -- [Track 02]. Se a te d\u27intorno scherza / Gaetano Donizetti -- [Track 03]. O del mio amato ben / Stephano Donaudy -- [Track 04]. Perduta ho la speranza / Stephano Donaudy -- [Track 05]. Au tic-tac des castegnettes / Gaetano Donizetti -- [Track 06]. Les roses d\u27Ispahan / Gabriel Faure -- [Track 07]. Soliloquy / John Work -- [Track 08]. Seit ich ihn gesehen / Robert Schumann -- [Track 09]. Batti, batti, o bel Masetto / Wolfgang Mozart

In silico analyses of mitochondrial ORFans in freshwater mussels (Bivalvia: Unionoida) provide a framework for future studies of their origin and function

Protein sequence alignment of Cumberlandia monodonta M-ORF and ATP8, along with ATP8 from the most diverse members of the Mt_ATP-synt_B superfamily (pfam02326). Homo sapiens ATP8 has also been included for comparison. The alignment was generated using T-COFFEE. The most conserved N-terminal domain, i.e. the best aligned portion, is in red; the rest of the sequences are rather badly aligned (in green). Consensus is shown and indicates good (red), intermediate (yellow), and bad alignment (green), and insertion/deletion (in blue). Cumberland, Cumberlandia monodonta; H_sapiens, Homo sapiens; Malawimonas, Malawimonas sp. (Excavate); Thraustoch, Thraustochytrium sp. (Stramenopiles); Mesostigma, Mesostigma sp. (Streptophyta); Reclinomon, Reclinomonas sp. (Protozoa); Porphyra, Porphyra sp. (Rhodophyta); Cyanidiosc, Cyanidioschyzon sp. (Rhodophyta); Pseudendoc, Pseudendoclonium sp. (Chlorophyta); Acanthamoe, Acanthamoeba sp. (Amoebozoa); Nephroselm, Nephroselmis sp. (Streptophyta). (PDF 236 kb

“I thought I’m better off just trying to put this behind me” – a contemporary approach to understanding why women decide not to report sexual violence

Sexual offence disclosures are on the rise, thought to be the result of growing numbers of prosecutions brought against well-known public figures and mobilisation of movements such as #MeToo. Despite this, data continue to indicate that most victim-survivors will never report their abuse. This study aimed to explore why women continue to decide not to report sexual assault to the police. Secondary data were collated and analysed, pertaining to survivor accounts of sexual assault, posted in response to a prominent online video entitled ‘Women Tell Us Why They Didn’t Report Their Sexual Assault’. Thematic analysis revealed three main themes regarding why women chose not to report: (1) Lack of faith in the Criminal Justice System (encompassing two sub-themes, no evidence and traumatisation of reporting), (2) Self-blame, and (3) Knowing the perpetrator. Practical applications and reforms concerning empathic police responses and CJS improvements surrounding timeliness, case progression, and conviction rates are discussed

Evolution of sex-dependent mtDNA transmission in freshwater mussels (Bivalvia: Unionida)

Doubly uniparental inheritance (DUI) describes a mode of mtDNA transmission widespread in gonochoric freshwater mussels (Bivalvia: Palaeoheterodonta: Unionida). In this system, both female- and male-transmitted mtDNAs, named F and M respectively, coexist in the same species. In unionids, DUI is strictly correlated to gonochorism and to the presence of the atypical open reading frames (ORFans) F-orf and M-orf, respectively inside F and M mtDNAs, which are hypothesized to participate in sex determination. However, DUI is not found in all three Unionida superfamilies (confirmed in Hyrioidea and Unionoidea but not in Etherioidea), raising the question of its origin in these bivalves. To reconstruct the co-evolution of DUI and of ORFans, we sequenced the mtDNAs of four unionids (two gonochoric with DUI, one gonochoric and one hermaphroditic without DUI) and of the related gonochoric species Neotrigonia margaritacea (Palaeoheterodonta: Trigoniida). Our analyses suggest that rearranged mtDNAs appeared early during unionid radiation, and that a duplicated and diverged atp8 gene evolved into the M-orf associated with the paternal transmission route in Hyrioidea and Unionoidea, but not in Etherioidea. We propose that novel mtDNA-encoded genes can deeply influence bivalve sex determining systems and the evolution of the mitogenomes in which they occur

Expanding the Search for Sperm Transmission Elements in the Mitochondrial Genomes of Bivalve Mollusks

This research was funded by Discovery grants from the Natural Sciences and Engineering Research Council of Canada (NSERC) to D.T.S. (grant number 217175) and S.B. (grant number 435656). E.E.C. was funded by the European Union's Horizon 2020 research and innovation programme under the Marie Skodowska-Curie grant agreement No713750, carried out with the financial support of the Regional Council of Provence- Alpes-Cote d'Azur and with the financial support of the A*MIDEX (n degrees ANR- 11-IDEX-0001-02), funded by the Investissements d'Avenir project funded by the French Government, managed by the French National Research Agency [ANR]. B.M.R. was supported by an NSERC CGS-D award, Killam Predoctoral Scholarship, and a NS Graduate Scholarship. M.A.G.-R. was supported by a Harrison McCain Visiting Professorship Award at Acadia University from the Harrison McCain Foundation.Doubly uniparental inheritance (DUI) of mitochondrial DNA (mtDNA) in bivalve mollusks is one of the most notable departures from the paradigm of strict maternal inheritance of mtDNA among metazoans. Recently, work on the Mediterranean mussel Mytilus galloprovincialis suggested that a nucleotide motif in the control region of this species, known as the sperm transmission element (STE), helps protect male-transmitted mitochondria from destruction during spermatogenesis. Subsequent studies found similar, yet divergent, STE motifs in other marine mussels. Here, we extend the in silico search for mtDNA signatures resembling known STEs. This search is carried out for the large unassigned regions of 157 complete mitochondrial genomes from within the Mytiloida, Veneroida, Unionoida, and Ostreoida bivalve orders. Based on a sliding window approach, we present evidence that there are additional putative STE signatures in the large unassigned regions of several marine clams and freshwater mussels with DUI. We discuss the implications of this finding for interpreting the origin of doubly uniparental inheritance in ancestral bivalve mollusks, as well as potential future in vitro and in silico studies that could further refine our understanding of the early evolution of this unusual system of mtDNA inheritance.Natural Sciences and Engineering Research Council of Canada (NSERC) 217175 435656European Commission 713750Region Provence-Alpes-Cote d'AzurFrench National Research Agency (ANR) ANR- 11-IDEX-0001-02 NSERC CGS-D awardKillam Predoctoral ScholarshipNS Graduate ScholarshipHarrison McCain Visiting Professorship Award at Acadia University from the Harrison McCain Foundatio

Pre-exercise carbohydrate or protein ingestion influences substrate oxidation but not performance or hunger compared with cycling in the fasted state

Nutritional intake can influence exercise metabolism and performance, but there is a lack of research comparing protein-rich pre-exercise meals with endurance exercise performed both in the fasted state and following a carbohydrate-rich breakfast. The purpose of this study was to determine the effects of three pre-exercise nutrition strategies on metabolism and exercise capacity during cycling. On three occasions, seventeen trained male cyclists (VO2peak 62.2 ± 5.8 mL·kg−1·min−1, 31.2 ± 12.4 years, 74.8 ± 9.6 kg) performed twenty minutes of submaximal cycling (4 × 5 min stages at 60%, 80%, and 100% of ventilatory threshold (VT), and 20% of the difference between power at the VT and peak power), followed by 3 × 3 min intervals at 80% peak aerobic power and 3 × 3 min intervals at maximal effort, 30 min after consuming a carbohydrate-rich meal (CARB; 1 g/kg CHO), a protein-rich meal (PROTEIN; 0.45 g/kg protein + 0.24 g/kg fat), or water (FASTED), in a randomized and counter-balanced order. Fat oxidation was lower for CARB compared with FASTED at and below the VT, and compared with PROTEIN at 60% VT. There were no differences between trials for average power during high-intensity intervals (367 ± 51 W, p = 0.516). Oxidative stress (F2-Isoprostanes), perceived exertion, and hunger were not different between trials. Overall, exercising in the overnight-fasted state increased fat oxidation during submaximal exercise compared with exercise following a CHO-rich breakfast, and pre-exercise protein ingestion allowed similarly high levels of fat oxidation. There were no differences in perceived exertion, hunger, or performance, and we provide novel data showing no influence of pre-exercise nutrition ingestion on exercise-induced oxidative stress

Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA

<p>Abstract</p> <p>Background</p> <p>Doubly uniparental inheritance (DUI) is an atypical system of animal mtDNA inheritance found only in some bivalves. Under DUI, maternally (F genome) and paternally (M genome) transmitted mtDNAs yield two distinct gender-associated mtDNA lineages. The oldest distinct M and F genomes are found in freshwater mussels (order Unionoida). Comparative analyses of unionoid mitochondrial genomes and a robust phylogenetic framework are necessary to elucidate the origin, function and molecular evolutionary consequences of DUI. Herein, F and M genomes from three unionoid species, <it>Venustaconcha ellipsiformis, Pyganodon grandis </it>and <it>Quadrula quadrula </it>have been sequenced. Comparative genomic analyses were carried out on these six genomes along with two F and one M unionoid genomes from GenBank (F and M genomes of <it>Inversidens japanensis </it>and F genome of <it>Lampsilis ornata</it>).</p> <p>Results</p> <p>Compared to their unionoid F counterparts, the M genomes contain some unique features including a novel localization of the <it>trnH </it>gene, an inversion of the <it>atp8-trnD </it>genes and a unique 3'coding extension of the cytochrome <it>c </it>oxidase subunit II gene. One or more of these unique M genome features could be causally associated with paternal transmission. Unionoid bivalves are characterized by extreme intraspecific sequence divergences between gender-associated mtDNAs with an average of 50% for <it>V. ellipsiformis</it>, 50% for <it>I. japanensis</it>, 51% for <it>P. grandis </it>and 52% for <it>Q. quadrula </it>(uncorrected amino acid p-distances). Phylogenetic analyses of 12 protein-coding genes from 29 bivalve and five outgroup mt genomes robustly indicate bivalve monophyly and the following branching order within the autolamellibranch bivalves: ((Pteriomorphia, Veneroida) Unionoida).</p> <p>Conclusion</p> <p>The basal nature of the Unionoida within the autolamellibranch bivalves and the previously hypothesized single origin of DUI suggest that (1) DUI arose in the ancestral autolamellibranch bivalve lineage and was subsequently lost in multiple descendant lineages and (2) the mitochondrial genome characteristics observed in unionoid bivalves could more closely resemble the DUI ancestral condition. Descriptions and comparisons presented in this paper are fundamental to a more complete understanding regarding the origins and consequences of DUI.</p

Heat-shock responsive genes identified and validated in Atlantic cod (Gadus morhua) liver, head kidney and skeletal muscle using genomic techniques

Background: Daily and seasonal changes in temperature are challenges that fish within aquaculture settings cannot completely avoid, and are known to elicit complex organismal and cellular stress responses. We conducted a large-scale gene discovery and transcript expression study in order to better understand the genes that are potentially involved in the physiological and cellular aspects of stress caused by heat-shock. We used suppression subtractive hybridization (SSH) cDNA library construction and characterization to identify transcripts that were dysregulated by heat-shock in liver, skeletal muscle and head kidney of Atlantic cod. These tissues were selected due to their roles in metabolic regulation, locomotion and growth, and immune function, respectively. Fish were exposed for 3 hours to an 8°C elevation in temperature, and then allowed to recover for 24 hours at the original temperature (i.e. 10°C). Tissue samples obtained before heat-shock (BHS), at the cessation of heat-shock (CS), and 3, 12, and 24 hours after the cessation of heat-shock (ACS), were used for reciprocal SSH library construction and quantitative reverse transcription - polymerase chain reaction (QPCR) analysis of gene expression using samples from a group that was transferred but not heat-shocked (CT) as controls.Results: We sequenced and characterized 4394 ESTs (1524 from liver, 1451 from head kidney and 1419 from skeletal muscle) from three "forward subtracted" libraries (enriched for genes up-regulated by heat-shock) and 1586 from the liver "reverse subtracted" library (enriched for genes down-regulated by heat-shock), for a total of 5980 ESTs. Several cDNAs encoding putative chaperones belonging to the heat-shock protein (HSP) family were found in these libraries, and "protein folding" was among the gene ontology (GO) terms with the highest proportion in the libraries. QPCR analysis of HSP90α and HSP70-1 (synonym: HSPA1A) mRNA expression showed significant up-regulation in all three tissues studied. These transcripts were more than 100-fold up-regulated in liver following heat-shock. We also identified HSP47, GRP78 and GRP94-like transcripts, which were significantly up-regulated in all 3 tissues studied. Toll-like receptor 22 (TLR22) transcript, found in the liver reverse SSH library, was shown by QPCR to be significantly down-regulated in the head kidney after heat-shock.Conclusion: Chaperones are an important part of the cellular response to stress, and genes identified in this work may play important roles in resistance to thermal-stress. Moreover, the transcript for one key immune response gene (TLR22) was down-regulated by heat-shock, and this down-regulation may be a component of heat-induced immunosuppression