Eukaryotic RNases H1 act processively by interactions through the duplex RNA-binding domain

Ribonucleases H have mostly been implicated in eliminating short RNA primers used for initiation of lagging strand DNA synthesis. Escherichia coli RNase HI cleaves these RNA–DNA hybrids in a distributive manner. We report here that eukaryotic RNases H1 have evolved to be processive enzymes by attaching a duplex RNA-binding domain to the RNase H region. Highly conserved amino acids of the duplex RNA-binding domain are required for processivity and nucleic acid binding, which leads to dimerization of the protein. The need for a processive enzyme underscores the importance in eukaryotic cells of processing long hybrids, most of which remain to be identified. However, long RNA–DNA hybrids formed during immunoglobulin class-switch recombination are potential targets for RNase H1 in the nucleus. In mitochondria, where RNase H1 is essential for DNA formation during embryogenesis, long hybrids may be involved in DNA replication

CD47 restricts antiviral function of alveolar macrophages during influenza virus infection

CD47 is an ubiquitously expressed surface molecule with significant impact on immune responses. However, its role for antiviral immunity is not fully understood. Here, we revealed that the expression of CD47 on immune cells seemed to disturb the antiviral immune response as CD47-deficient mice (CD47−/−) showed an augmented clearance of influenza A virus (IAV). Specifically, we have shown that enhanced viral clearance is mediated by alveolar macrophages (aMФ). Although aMФ displayed upregulation of CD47 expression during IAV infection in wildtype mice, depletion of aMФ in CD47−/− mice during IAV infection reversed the augmented viral clearance. We have also demonstrated that CD47 restricts hemoglobin (HB) expression in aMФ after IAV and severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2) infection, with HB showing antiviral properties by enhancing the IFN-β response. Our study showed a negative role for CD47 during antiviral immune responses in the lung by confining HB expression in aMФ

Total differential cross sections for Ar–CH4 from an ab initio potential

Total differential cross sections for the Ar–CH4 scattering complex at ECM=90.1 meV were obtained from converged close-coupling calculations based on a recent ab initio potential computed by symmetry-adapted perturbation theory (SAPT). Agreement with experiment is good, which demonstrates the accuracy of the SAPT potential

Solar Cycle-Modulated Deformation of the Earth–Ionosphere Cavity

The Earth–ionosphere cavity resonator is occupied primarily by the electromagnetic radiation of lightning below 100 Hz. The phenomenon is known as Schumann resonances (SR). SR intensity is an excellent indicator of lightning activity and its distribution on global scales. However, long-term measurements from high latitude SR stations revealed a pronounced in-phase solar cycle modulation of SR intensity seemingly contradicting optical observations of lightning from satellite, which do not show any significant solar cycle variation in the intensity and spatial distribution of lightning activity on the global scale. The solar cycle-modulated local deformation of the Earth–ionosphere cavity by the ionization of energetic electron precipitation (EEP) has been suggested as a possible phenomenon that may account for the observed long-term modulation of SR intensity. Precipitating electrons in the energy range of 1–300 keV can affect the Earth–ionosphere cavity resonator in the altitude range of about 70–110 km and modify the SR intensities. However, until now there was no direct evidence documented in the literature supporting this suggestion. In this paper we present long-term SR intensity records from eight stations, each equipped with a pair of induction coil magnetometers: five high latitude (|lat| \u3e 60°), two mid-high latitude (50° \u3c |lat| \u3c 60°) and one low latitude (|lat| \u3c 30°). These long-term, ground-based SR intensity records are compared on the annual and interannual timescales with the fluxes of precipitating 30–300 keV medium energy electrons provided by the POES NOAA-15 satellite and on the daily timescale with electron precipitation events identified using a SuperDARN radar in Antarctica. The long-term variation of the Earth–ionosphere waveguide’s effective height, as inferred from its cutoff frequency, is independently analyzed based on spectra recorded by the DEMETER satellite. It is shown that to account for all our observations one needs to consider both the effect of solar X-rays and EEP which modify the quality factor of the cavity and deform it dominantly over low- and high latitudes, respectively. Our results suggest that SR measurements should be considered as an alternative tool for collecting information about and thus monitoring changes in the ionization state of the lower ionosphere associated with EEP

Role of Transferrin Receptor and the ABC Transporters ABCB6 and ABCB7 for Resistance and Differentiation of Tumor Cells towards Artesunate

The anti-malarial artesunate also exerts profound anti-cancer activity. The susceptibility of tumor cells to artesunate can be enhanced by ferrous iron. The transferrin receptor (TfR) is involved in iron uptake by internalization of transferrin and is over-expressed in rapidly growing tumors. The ATP-binding cassette (ABC) transporters ABCB6 and ABCB7 are also involved in iron homeostasis. To investigate whether these proteins play a role for sensitivity towards artesunate, Oncotest's 36 cell line panel was treated with artesunate or artesunate plus iron(II) glycine sulfate (Ferrosanol®). The majority of cell lines showed increased inhibition rates, for the combination of artesunate plus iron(II) glycine sulfate compared to artesunate alone. However, in 11 out of the 36 cell lines the combination treatment was not superior. Cell lines with high TfR expression significantly correlated with high degrees of modulation indicating that high TfR expressing tumor cells would be more efficiently inhibited by this combination treatment than low TfR expressing ones. Furthermore, we found a significant relationship between cellular response to artesunate and TfR expression in 55 cell lines of the National Cancer Institute (NCI), USA. A significant correlation was also found for ABCB6, but not for ABCB7 in the NCI panel. Artesunate treatment of human CCRF-CEM leukemia and MCF7 breast cancer cells induced ABCB6 expression but repressed ABCB7 expression. Finally, artesunate inhibited proliferation and differentiation of mouse erythroleukemia (MEL) cells. Down-regulation of ABCB6 by antisense oligonucleotides inhibited differentiation of MEL cells indicating that artesunate and ABCB6 may cooperate. In conclusion, our results indicate that ferrous iron improves the activity of artesunate in some but not all tumor cell lines. Several factors involved in iron homeostasis such as TfR and ABCB6 may contribute to this effect

Evaluating the Effects of Cutoffs and Treatment of Long-range Electrostatics in Protein Folding Simulations

The use of molecular dynamics simulations to provide atomic-level descriptions of biological processes tends to be computationally demanding, and a number of approximations are thus commonly employed to improve computational efficiency. In the past, the effect of these approximations on macromolecular structure and stability has been evaluated mostly through quantitative studies of small-molecule systems or qualitative observations of short-timescale simulations of biological macromolecules. Here we present a quantitative evaluation of two commonly employed approximations, using a test system that has been the subject of a number of previous protein folding studies–the villin headpiece. In particular, we examined the effect of (i) the use of a cutoff-based force-shifting technique rather than an Ewald summation for the treatment of electrostatic interactions, and (ii) the length of the cutoff used to determine how many pairwise interactions are included in the calculation of both electrostatic and van der Waals forces. Our results show that the free energy of folding is relatively insensitive to the choice of cutoff beyond 9 Å, and to whether an Ewald method is used to account for long-range electrostatic interactions. In contrast, we find that the structural properties of the unfolded state depend more strongly on the two approximations examined here