Assessing thermal maturity through a multi-proxy approach: a case study from the Permian Faraghan Formation (Zagros Basin, Southwest Iran)

This study focuses on the thermal maturity of Permian deposits from the Zagros Basin, Southwest Iran, employing both optical methods (Thermal Alteration Index, Palynomorph Darkness Index, Vitrinite Reflectance, UV Fluorescence) and geochemical analyses of organic matter (Rock Eval Pyrolysis and MicroRaman spectroscopy) applied to the Faraghan Formation along two investigated Darreh Yas and Kuh e Faraghan surface sections. Furthermore, an integrated palynofacies and lithofacies analysis was carried out in order to integrate the few studies on the depositional environment. The Faraghan Formation, which is widely distributed in the Zagros area, generally consists of shale intercalated with sandstones and pebble conglomerates in the lower part, followed by a succession of sandstone, siltstone and shaly intercalations and with carbonate levels at the top. The integrated palynofacies and lithofacies data confirm a coastal depositional setting evolving upwards to a shallow marine carbonate environment upwards. Rock Eval Pyrolysis and Vitrinite Reflectance analysis showed that the organic matter from samples of the Darreh Yas and Kuh e Faraghan sections fall in the mature to postmature range with respect to the oil to gas generation window, restricting the thermal maturity range proposed by previous authors. Similar results were obtained with MicroRaman spectroscopy and optical analysis such as Thermal Alteration Index and UV Fluorescence. Palynomorph Darkness Index values were compared with Rock Eval Pyrolysis and vitrinite reflectance values and discussed for the first time in the late stage of oil generation.This research was funded by PRIN (2017RX9XXXY-CIRILLI), by Fondo Ricerca di Base Department of Physics and Geology, University of Perugia (SPIRICBAS2018-SPINA), by the project “Paleontological Studies and Biozonation of Paleozoic Sediments in Central Iran and Zagros Basins” (coordinator R. Rettori) and MIUR grants-SORCI to PhD School of Science and Technology for Physics and Geology (XXXIV Cycle), University of Perugia; Project “Paleontological Studies and Biozonation of Paleozoic Sediments in Central Iran and Zagros Basins” (RETTORI).info:eu-repo/semantics/publishedVersio

Argonaute 2 drives miR-145-5p-dependent gene expression program in breast cancer cells

To perform their regulatory functions, microRNAs (miRNAs) must assemble with any of the four mammalian Argonaute (Ago) family of proteins, Ago1–4, into an effector complex known as the RNA-induced silencing complex (RISC). While the mature miRNA guides the RISC complex to its target mRNA, the Ago protein represses mRNA translation. The specific roles of the various Ago members in mediating miRNAs activity, however, haven’t been clearly established. In this study, we investigated the contribution of Ago2, the only human Ago protein endowed with nuclease activity, to the function of tumor-suppressor miR-145-5p in breast cancer (BC). We show that miR-145-5p and Ago2 protein are concomitantly downregulated in BC tissues and that restoration of miR-145-5p expression in BC cells leads to Ago2 protein induction through the loosening of Ago2 mRNA translational repression. Functionally, miR-145-5p exerts its inhibitory activity on cell migration only in presence of Ago2, while, upon Ago2 depletion, we observed increased miR-145/Ago1 complex and enhanced cell motility. Profiling by microarray of miR-145-5p target mRNAs, in BC cells depleted or not of Ago2, revealed that miR-145-5p drives Ago2-dependent and -independent activities. Our results highlight that the Ago2 protein in cancer cells strictly dictates miR-145-5p tumor suppressor activity

Robust infants face tracking using active appearance models: a mixed-state CONDENSATION approach

In this paper a new extension of the CONDENSATION algorithm, with application to infants face tracking, will be introduced. In this work we address the problem of tracking a face and its features in baby video sequences. A mixed state particle filtering scheme is proposed, where the distribution of observations is derived from an active appearance model. The mixed state approach combines several dynamic models in order to account for different occlusion situations. Experiments on real video show that the proposed approach augments the tracker robustness to occlusions while maintaining the computational time competitive

Genetically-Determined Hyperfunction of the S100B/RAGE Axis Is a Risk Factor for Aspergillosis in Stem Cell Transplant Recipients

Invasive aspergillosis (IA) is a major threat to the successful outcome of hematopoietic stem cell transplantation (HSCT), although individual risk varies considerably. Recent evidence has established a pivotal role for a danger sensing mechanism implicating the S100B/receptor for advanced glycation end products (RAGE) axis in antifungal immunity. The association of selected genetic variants in the S100B/RAGE axis with susceptibility to IA was investigated in 223 consecutive patients undergoing HSCT. Furthermore, studies addressing the functional consequences of these variants were performed. Susceptibility to IA was significantly associated with two distinct polymorphisms in RAGE (-374T/A) and S100B (+427C/T) genes, the relative contribution of each depended on their presence in both transplantation counterparts [patient SNPRAGE, adjusted hazard ratio (HR), 1.97; P = 0.042 and donor SNPRAGE, HR, 2.03; P = 0.047] or in donors (SNPS100B, HR, 3.15; P = 7.8e-4) only, respectively. Functional assays demonstrated a gain-of-function phenotype of both variants, as shown by the enhanced expression of inflammatory cytokines in RAGE polymorphic cells and increased S100B secretion in vitro and in vivo in the presence of the S100B polymorphism. These findings point to a relevant role of the danger sensing signaling in human antifungal immunity and highlight a possible contribution of a genetically-determined hyperfunction of the S100B/RAGE axis to susceptibility to IA in the HSCT setting

Hypoxia Promotes Danger-mediated Inflammation via Receptor for Advanced Glycation End Products in Cystic Fibrosis

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TLR3 essentially promotes protective class I–restricted memory CD8+ T-cell responses to Aspergillus fumigatus in hematopoietic transplanted patients

Aspergillus fumigatus is a model fungal pathogen and a common cause of severe infections and diseases. CD8+ T cells are present in the human and murine T-cell repertoire to the fungus. However, CD8+ T-cell function in infection and the molecular mechanisms that control their priming and differentiation into effector and memory cells in vivo remain elusive. In the present study, we report that both CD4+ and CD8+ T cells mediate protective memory responses to the fungus contingent on the nature of the fungal vaccine. Mechanistically, class I MHC-restricted, CD8+ memory T cells were activated through TLR3 sensing of fungal RNA by cross-presenting dendritic cells. Genetic deficiency of TLR3 was associated with susceptibility to aspergillosis and concomitant failure to activate memory-protective CD8+ T cells both in mice and in patients receiving stem-cell transplantations. Therefore, TLR3 essentially promotes antifungal memory CD8+ T-cell responses and its deficiency is a novel susceptibility factor for aspergillosis in high-risk patients.These studies were supported by the Specific Targeted Research Project ALLFUN (FP7-HEALTH-2009 contract number 260338 to L.R.), by SYBARIS (FP7-HEALTH-2009 contract number 242220 to L.R.), and by the Italian Project AIDS 2010 by the Istituto Superiore di Sanita (contract number 40H40 to L.R.). A.C. and C.C. were supported by fellowships from Fundacao para a Ciencia e Tecnologia, Portugal (contracts SFRH/BPD/46292/2008 and SFRH/BD/65962/2009, respectively)

First Speleological and Biological Characterization of a Submerged Cave of the Tremiti Archipelago Geomorphosite (Adriatic Sea)

The Tremiti Islands Archipelago is located in the Central-Southern Adriatic Sea and is characterized by a strong karst activity. Due to their landscape, geological, hydrological, archaeological, and historical value, Tremiti Islands are considered a geomorphosite. We carried out a preliminary, non-destructive survey by studying the speleological and biological features of the submerged sea cave Elle, located at Cala Sorrentino (Capraia Island), representing an EU Natura 2000 Priority Habitat. Topographic (perimeter length, width, height, GPS location, depth) and hydrological parameters (temperature, dissolved oxygen, pH, irradiance, water movement) were measured and its map was produced, based on morphological measurements and biological evidence. Species composition and biotic cover were investigated by image analysis. The benthic community was dominated by poriferans, together with remarkable assemblages of scleractinians and polychaete serpulids and clearly reflected the sharp light and hydrological gradients from the entrance to the cave bottom. Furthermore, different phases were hypothesized for the genesis of the cave during sea regression and flooding periods. To be signaled is the record of Petrobiona massiliana, a sponge was protected under both Barcelona and Bern Convention and of some individuals of polychaete Serpulinae, which are still under description

First speleological and biological characterization of a submerged cave of the Tremiti Archipelago geomorphosite (Adriatic Sea)

The Tremiti Islands Archipelago is located in the Central-Southern Adriatic Sea and is char-acterized by a strong karst activity. Due to their landscape, geological, hydrological, archaeological, and historical value, Tremiti Islands are considered a geomorphosite. We carried out a preliminary, non-destructive survey by studying the speleological and biological features of the submerged sea cave Elle, located at Cala Sorrentino (Capraia Island), representing an EU Natura 2000 Priority Habitat. Topographic (perimeter length, width, height, GPS location, depth) and hydrological parameters (temperature, dissolved oxygen, pH, irradiance, water movement) were measured and its map was produced, based on morphological measurements and biological evidence. Species composition and biotic cover were investigated by image analysis. The benthic community was dominated by poriferans, together with remarkable assemblages of scleractinians and polychaete serpulids and clearly reflected the sharp light and hydrological gradients from the entrance to the cave bottom. Furthermore, different phases were hypothesized for the genesis of the cave during sea regression and flooding periods. To be signaled is the record of Petrobiona massiliana, a sponge was protected under both Barcelona and Bern Convention and of some individuals of polychaete Serpulinae, which are still under description.6n

The Fornovolasco area (Alpi Apuane, Northern Apennines): a review and update on its Palaeozoic succession, middle Permian magmatism, and tectonic setting

This study aims at refining the geological setting of the Fornovolasco area in the southern part of the Alpi Apuane (Northern Apennines, Italy). Due to the occurrence of Palaeozoic units of debated origin and age, its structural setting is the key for the comprehension of the evolution of the easternmost sector of the Alpi Apuane. In this context, we combined a 1:5,000 scale field survey with microfloristic and organic matter study, and petrographical and structural analysis. By means of this approach, we obtained the following results: (a) the "Fornovolasco schists" consists of two different lithostratigraphic units: (i) quartz-metasandstone with interbedded levels of graphitic metapelite, characterised by upper Cambrian (Miaolingian-Furongian) acritarch microflora and relatable to the Filladi inferiori Fm; (ii) graphitic metapelite, fine-grained metasandstone and metabreccia, with a well-preserved and diversified middle-upper Permian sporomorphs microflora, making it possible to correlate this unit with the Montignoso Formation. This evidence documents, for the first time, the occurrence of a post-Variscan Palaeozoic unit in the eastern Alpi Apuane.(b) The "Fornovolasco schists" hosts centimetre-thick tourmaline veins and a diffuse network of felsic sheet-like plutonic bodies, supporting widespread magma intrusion associated with hydrothermal activities framed in the post-Variscan magmatism.(c) The studied area consists of three stacked first-order tectonic units: the Tuscan Nappe, Panie Unit, and Apuane Unit. These are characterised by superposed deformational structures of which development was assisted by low-to very-low-grade metamorphism developed during underplating and subsequent exhumation events