1,023 research outputs found
An ISS Small-Gain Theorem for General Networks
We provide a generalized version of the nonlinear small-gain theorem for the
case of more than two coupled input-to-state stable (ISS) systems. For this
result the interconnection gains are described in a nonlinear gain matrix and
the small-gain condition requires bounds on the image of this gain matrix. The
condition may be interpreted as a nonlinear generalization of the requirement
that the spectral radius of the gain matrix is less than one. We give some
interpretations of the condition in special cases covering two subsystems,
linear gains, linear systems and an associated artificial dynamical system.Comment: 26 pages, 3 figures, submitted to Mathematics of Control, Signals,
and Systems (MCSS
Singularly Perturbed Monotone Systems and an Application to Double Phosphorylation Cycles
The theory of monotone dynamical systems has been found very useful in the
modeling of some gene, protein, and signaling networks. In monotone systems,
every net feedback loop is positive. On the other hand, negative feedback loops
are important features of many systems, since they are required for adaptation
and precision. This paper shows that, provided that these negative loops act at
a comparatively fast time scale, the main dynamical property of (strongly)
monotone systems, convergence to steady states, is still valid. An application
is worked out to a double-phosphorylation ``futile cycle'' motif which plays a
central role in eukaryotic cell signaling.Comment: 21 pages, 3 figures, corrected typos, references remove
A Characterization of Scale Invariant Responses in Enzymatic Networks
An ubiquitous property of biological sensory systems is adaptation: a step
increase in stimulus triggers an initial change in a biochemical or
physiological response, followed by a more gradual relaxation toward a basal,
pre-stimulus level. Adaptation helps maintain essential variables within
acceptable bounds and allows organisms to readjust themselves to an optimum and
non-saturating sensitivity range when faced with a prolonged change in their
environment. Recently, it was shown theoretically and experimentally that many
adapting systems, both at the organism and single-cell level, enjoy a
remarkable additional feature: scale invariance, meaning that the initial,
transient behavior remains (approximately) the same even when the background
signal level is scaled. In this work, we set out to investigate under what
conditions a broadly used model of biochemical enzymatic networks will exhibit
scale-invariant behavior. An exhaustive computational study led us to discover
a new property of surprising simplicity and generality, uniform linearizations
with fast output (ULFO), whose validity we show is both necessary and
sufficient for scale invariance of enzymatic networks. Based on this study, we
go on to develop a mathematical explanation of how ULFO results in scale
invariance. Our work provides a surprisingly consistent, simple, and general
framework for understanding this phenomenon, and results in concrete
experimental predictions
On local linearization of control systems
We consider the problem of topological linearization of smooth (C infinity or
real analytic) control systems, i.e. of their local equivalence to a linear
controllable system via point-wise transformations on the state and the control
(static feedback transformations) that are topological but not necessarily
differentiable. We prove that local topological linearization implies local
smooth linearization, at generic points. At arbitrary points, it implies local
conjugation to a linear system via a homeomorphism that induces a smooth
diffeomorphism on the state variables, and, except at "strongly" singular
points, this homeomorphism can be chosen to be a smooth mapping (the inverse
map needs not be smooth). Deciding whether the same is true at "strongly"
singular points is tantamount to solve an intriguing open question in
differential topology
Social representations of HIV/AIDS in five Central European and Eastern European countries: A multidimensional analysis
Cognitive processing models of risky sexual behaviour have proliferated in the two decades since the first reporting of HIV/AIDS, but far less attention has been paid to individual and
group representations of the epidemic and the relationship between these representations and reported sexual behaviours. In this study, 494 business people and medics from Estonia, Georgia, Hungary, Poland and Russia sorted free associations around HIV/AIDS in a matrix completion task. Exploratory factor and multidimensional scaling analyses revealed two main dimensions (labelled ‘Sex’ and ‘Deadly disease’), with significant cultural and gender variations along both dimension scores. Possible explanations for these results are discussed in the light of growing concerns over the spread of the epidemic in this region
From paradox to pattern shift: Conceptualising liminal hotspots and their affective dynamics
This article introduces the concept of liminal hotspots as a specifically psychosocial and sociopsychological type of wicked problem, best addressed in a process-theoretical framework. A liminal hotspot is defined as an occasion characterised by the experience of being trapped in the interstitial dimension between different forms-of-process. The paper has two main aims. First, to articulate a nexus of concepts associated with liminal hotspots that together provide general analytic purchase on a wide range of problems concerning “troubled” becoming. Second, to provide concrete illustrations through examples drawn from the health domain. In the conclusion, we briefly indicate the sense in which liminal hotspots are part of broader and deeper historical processes associated with changing modes for the management and navigation of liminality
An Exact Algorithm for Side-Chain Placement in Protein Design
Computational protein design aims at constructing novel or improved functions
on the structure of a given protein backbone and has important applications in
the pharmaceutical and biotechnical industry. The underlying combinatorial
side-chain placement problem consists of choosing a side-chain placement for
each residue position such that the resulting overall energy is minimum. The
choice of the side-chain then also determines the amino acid for this position.
Many algorithms for this NP-hard problem have been proposed in the context of
homology modeling, which, however, reach their limits when faced with large
protein design instances.
In this paper, we propose a new exact method for the side-chain placement
problem that works well even for large instance sizes as they appear in protein
design. Our main contribution is a dedicated branch-and-bound algorithm that
combines tight upper and lower bounds resulting from a novel Lagrangian
relaxation approach for side-chain placement. Our experimental results show
that our method outperforms alternative state-of-the art exact approaches and
makes it possible to optimally solve large protein design instances routinely
Photography as an act of collaboration
The camera is usually considered to be a passive tool under the control of the operator. This definition implicitly constrains how we use the medium, as well as how we look at – and what we see in – its interpretations of scenes, objects, events and ‘moments’. This text will suggest another way of thinking about – and using – the photographic medium. Based on the evidence of photographic practice (mine and others’), I will suggest that, as a result of the ways in which the medium interprets, juxtaposes and renders the elements in front of the lens, the camera is capable of depicting scenes, events and moments that did not exist and could not have existed until brought into being by the act of photographing them. Accordingly, I will propose that the affective power of many photographs is inseparable from their ‘photographicness’ – and that the photographic medium should therefore be considered as an active collaborator in the creation of uniquely photographic images
Retelling racialized violence, remaking white innocence: the politics of interlocking oppressions in transgender day of remembrance
Transgender Day of Remembrance has become a significant political event among those resisting violence against gender-variant persons. Commemorated in more than 250 locations worldwide, this day honors individuals who were killed due to anti-transgender hatred or prejudice. However, by focusing on transphobia as the definitive cause of violence, this ritual potentially obscures the ways in which hierarchies of race, class, and sexuality constitute such acts. Taking the Transgender Day of Remembrance/Remembering Our Dead project as a case study for considering the politics of memorialization, as well as tracing the narrative history of the Fred F. C. Martinez murder case in Colorado, the author argues that deracialized accounts of violence produce seemingly innocent White witnesses who can consume these spectacles of domination without confronting their own complicity in such acts. The author suggests that remembrance practices require critical rethinking if we are to confront violence in more effective ways. Description from publisher's site: http://caliber.ucpress.net/doi/abs/10.1525/srsp.2008.5.1.2
Introduction of Macromolecules into Bovine Adrenal Medullary Chromaffin Cells and Rat Pheochromocytoma Cells (PC12) by Permeabilization with Streptolysin O: Inhibitory Effect of Tetanus Toxin on Catecholamine Secretion
Conditions are described for controlled plasma membrane permeabilization of rat pheochromocytoma cells (PC12) and cultured bovine adrenal chromaffin cells by Streptolysin O (SLO). The transmembrane pores created by SLO invoke rapid efflux of intracellular 86Rb+ and ATP, and also permit passive diffusion of proteins, including immunoglobulins, into the cells. SLO-permeabilized PC12 cells release [3H]dopamine in response to micromolar concentrations of free Ca2+. Permeabilized adrenal chromaffin cells present a similar exocytotic response to Ca2+ in the presence of Mg2+/ ATP. Permeabilized PC12 cells accumulate antibodies against synaptophysin and calmodulin, but neither antibody reduces the Ca2+-dependent secretory response. Reduced tetanus toxin, although ineffective when applied to intact chromaffin cells, inhibits Ca2+-induced exocytosis by both types of permeabilized cells studied. Omission of dithiothreitol, toxin inactivation by boiling, or preincubation with neutralizing antibodies abolishes the inhibitory effect. The data indicate that plasma membrane permeabilization by Streptolysin O is a useful tool to probe and define cellular components that are involved in the final steps of exocytosis
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