Understanding how place matters for kids

Community development

Root traits predict decomposition across a landscape-scale grazing experiment

Acknowledgements We are grateful to the Woodland Trust for maintenance of and access to the Glen Finglas experiment. We thank Debbie Fielding, William Smith, Sarah McCormack, Allan Sim, Marcel Junker and Elaine Runge for help in the field and the laboratory. This research was part of the Glen Finglas project (formerly Grazing and Upland Birds (GRUB)) funded by the Scottish Government (RERAS). S.W.S. was funded by a BBSRC studentship.Peer reviewedPublisher PD

A complete ancient RNA genome : identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus

The origins of many plant diseases appear to be recent and associated with the rise of domestication, the spread of agriculture or recent global movements of crops. Distinguishing between these possibilities is problematic because of the difficulty of determining rates of molecular evolution over short time frames. Heterochronous approaches using recent and historical samples show that plant viruses exhibit highly variable and often rapid rates of molecular evolution. The accuracy of estimated evolution rates and age of origin can be greatly improved with the inclusion of older molecular data from archaeological material. Here we present the first reconstruction of an archaeological RNA genome, which is of Barley Stripe Mosaic Virus (BSMV) isolated from barley grain ~750 years of age. Phylogenetic analysis of BSMV that includes this genome indicates the divergence of BSMV and its closest relative prior to this time, most likely around 2000 years ago. However, exclusion of the archaeological data results in an apparently much more recent origin of the virus that postdates even the archaeological sample. We conclude that this viral lineage originated in the Near East or North Africa, and spread to North America and East Asia with their hosts along historical trade routes

Effect of sodium [36Cl]chlorate dose on total radioactive residues and residues of parent chlorate in swine

Sodium chlorate effectively reduces the numbers of gram-negative pathogens in gastrointestinal tracts of live animals when administered in the 24 to 72 hour period prior to slaughter

A subjective global checklist of the extant non-marine Ostracoda (Crustacea)

We present an updated, subjective list of the extant, non-marine ostracod genera and species of the world, with their distributions in the major zoogeographical regions, as well as a list of the genera in their present hierarchical taxonomic positions. The list includes all taxa described and taxonomic alterations made up to I July 2018. Taxonomic changes include 17 new combinations, 5 new names, I emended specific name and 11 new synonymies (1 tribe, 4 genera, 6 species). Taking into account the recognized synonymies, there are presently 2330 subjective species of non-marine ostracods in 270 genera. The most diverse family in non-marine habitats is the Cyprididae, comprising 43.2% of all species, followed by the Candonidae (29.0%), Entocytheridae (9.1%) and the Limnocytheridae (7.0%). An additional 13 families comprise the remaining 11.8% of described species. The Palaearctic zoogeographical region has the greatest number of described species (799), followed by the Afrotropical region with 453 species and the Nearctic region with 439 species. The Australasian and Neotropical regions each have 328 and 333 recorded species, respectively, while the Oriental region has 271. The vast majority of non-marine ostracods (89.8%) are endemic to one zoogeographical region, while only six species are found in six or more regions. We also present an additional list with 'uncertain species', which have neither been redescribed nor re-assessed since 1912, and which are excluded from the main list; a list of taxonomic changes presented in the present paper; a table with the number of species and % per family; and a table with numbers of new species described in the 20-year period between 1998 and 2017 per zoogeographical region. Two figures visualize the total number of species and endemic species per zoogeographical region, and the numbers of new species descriptions per decade for all families and the three largest families since 1770, respectively

A subjective global checklist of the extant non-marine Ostracoda (Crustacea)

We present an updated, subjective list of the extant, non-marine ostracod genera and species of the world, with their distributions in the major zoogeographical regions, as well as a list of the genera in their present hierarchical taxonomic positions. The list includes all taxa described and taxonomic alterations made up to I July 2018. Taxonomic changes include 17 new combinations, 5 new names, I emended specific name and 11 new synonymies (1 tribe, 4 genera, 6 species). Taking into account the recognized synonymies, there are presently 2330 subjective species of non-marine ostracods in 270 genera. The most diverse family in non-marine habitats is the Cyprididae, comprising 43.2% of all species, followed by the Candonidae (29.0%), Entocytheridae (9.1%) and the Limnocytheridae (7.0%). An additional 13 families comprise the remaining 11.8% of described species. The Palaearctic zoogeographical region has the greatest number of described species (799), followed by the Afrotropical region with 453 species and the Nearctic region with 439 species. The Australasian and Neotropical regions each have 328 and 333 recorded species, respectively, while the Oriental region has 271. The vast majority of non-marine ostracods (89.8%) are endemic to one zoogeographical region, while only six species are found in six or more regions. We also present an additional list with 'uncertain species', which have neither been redescribed nor re-assessed since 1912, and which are excluded from the main list; a list of taxonomic changes presented in the present paper; a table with the number of species and % per family; and a table with numbers of new species described in the 20-year period between 1998 and 2017 per zoogeographical region. Two figures visualize the total number of species and endemic species per zoogeographical region, and the numbers of new species descriptions per decade for all families and the three largest families since 1770, respectively

Combination of herbivore removal and nitrogen deposition increases upland carbon storage

© 2015 The Authors. Global Change Biology Published by John Wiley & Sons Ltd. Acknowledgements We thank Ruth Mitchell, Alison Hester, Bob Mardon, Eoghain Maclean, David Welch, National Trust for Scotland, Scottish Natural Heritage and the Woodland Trust for helping find appropriate exclosures and granting access permission. We thank Nick Littlewood and Antonio Lopez Nogueira for their assistance in the field and processing samples in the lab and Ron Smith and Tony Dore for providing N deposition data. SWS was funded by a BBSRC studentship.Non peer reviewedPublisher PD

Monitoring Success in Choice Neighborhoods: A Proposed Approach to Performance Measurement

Offers a framework and tools for performance management in the initiative to transform poor neighborhoods into revitalized, sustainable mixed-income communities. Proposes system components, logic model, management reports, and performance indicators

Educational returns, ability composition and cohort effects: theory and evidence for cohorts of early-career UK graduates

An increase over time in the proportion of young people obtaining a degree is likely to impact on the relative ability compositions (i) of graduates and non-graduates and (ii) across graduates with different classes of degree award. In a signalling framework, we examine the implications of this on biases across cohorts in estimates of educational returns. In an empirical analysis, we exploit administrative data on whole populations of UK university students for ten graduate cohorts to investigate the extent to which early labour market outcomes vary with class of degree awarded. Consistent with our theoretical model, we find that returns by degree class increased across cohorts during a period of substantial graduate expansion. We also corroborate the empirical findings with evidence from complementary data on graduate sample surveys

EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries

<p>Abstract</p> <p>Background</p> <p>Several biological techniques result in the acquisition of functional sets of cDNAs that must be sequenced and analyzed. The emergence of redundant databases such as UniGene and centralized annotation engines such as Entrez Gene has allowed the development of software that can analyze a great number of sequences in a matter of seconds.</p> <p>Results</p> <p>We have developed "EST Express", a suite of analytical tools that identify and annotate ESTs originating from specific mRNA populations. The software consists of a user-friendly GUI powered by PHP and MySQL that allows for online collaboration between researchers and continuity with UniGene, Entrez Gene and RefSeq. Two key features of the software include a novel, simplified Entrez Gene parser and tools to manage cDNA library sequencing projects. We have tested the software on a large data set (2,016 samples) produced by subtractive hybridization.</p> <p>Conclusion</p> <p>EST Express is an open-source, cross-platform web server application that imports sequences from cDNA libraries, such as those generated through subtractive hybridization or yeast two-hybrid screens. It then provides several layers of annotation based on Entrez Gene and RefSeq to allow the user to highlight useful genes and manage cDNA library projects.</p