215 research outputs found
The dynamically asymmetric SQUID: M\"unchhausen effect
We report on a complex zero-temperature decay channel of a classical object
in a metastable state coupled to a quantum degree of freedom. This setting can
be realized in a dc-SQUID where both Josephson-junctions have identical
critical currents I_c but feature strongly asymmetric dynamical parameters;
more precisely, selecting both parameters C and 1/R adequately large for one
and small for the other junction makes the first junction behave essentially
classical but lets quantum effects be present for the second one. The decay
process is initiated by the tunneling of the quantum junction, which distorts
the trapping potential of the classical junction; the metastable state of the
latter then becomes unstable if the distortion is large enough. We present the
dynamical phase diagram of this system providing the dependence of this decay
channel on the external bias current I and on the coupling strength between the
two junctions, determined by the loop inductance L.Comment: 4 pages, 3 figures, to appear in the VORTEX V proceedings in Physica
Extensional rupture of model non-Newtonian fluid filaments
We present molecular dynamics computer simulations of filaments of model
non-Newtonian liquid stretched in a uniaxial deformation to the point of
breaking. The liquid consists of Lennard-Jones monomers bound into chains of
100 monomers by nonlinear springs, and several different constant velocity and
constant strain rate deformations are considered. Generally we observe
nonuniform extensions originating in an interplay between the stretching forces
and elastic and capillary restoring mechanisms, leading to highly uneven shapes
and alternating stretched and unstretched regions of liquid. Except at the
fastest pulling speeds, the filaments continue to thin indefinitely and break
only when depleted of molecules, rather than common viscoelastic rupture
mechanisms.Comment: 7 pages text, 14 pages (eps) figure
Global stability for a class of virus models with CTL immune response and antigenic variation
We study the global stability of a class of models for in-vivo virus
dynamics, that take into account the CTL immune response and display antigenic
variation. This class includes a number of models that have been extensively
used to model HIV dynamics. We show that models in this class are globally
asymptotically stable, under mild hypothesis, by using appropriate Lyapunov
functions. We also characterise the stable equilibrium points for the entire
biologically relevant parameter range. As a byproduct, we are able to determine
what is the diversity of the persistent strains.Comment: 15 page
Fitting the integrated Spectral Energy Distributions of Galaxies
Fitting the spectral energy distributions (SEDs) of galaxies is an almost
universally used technique that has matured significantly in the last decade.
Model predictions and fitting procedures have improved significantly over this
time, attempting to keep up with the vastly increased volume and quality of
available data. We review here the field of SED fitting, describing the
modelling of ultraviolet to infrared galaxy SEDs, the creation of
multiwavelength data sets, and the methods used to fit model SEDs to observed
galaxy data sets. We touch upon the achievements and challenges in the major
ingredients of SED fitting, with a special emphasis on describing the interplay
between the quality of the available data, the quality of the available models,
and the best fitting technique to use in order to obtain a realistic
measurement as well as realistic uncertainties. We conclude that SED fitting
can be used effectively to derive a range of physical properties of galaxies,
such as redshift, stellar masses, star formation rates, dust masses, and
metallicities, with care taken not to over-interpret the available data. Yet
there still exist many issues such as estimating the age of the oldest stars in
a galaxy, finer details ofdust properties and dust-star geometry, and the
influences of poorly understood, luminous stellar types and phases. The
challenge for the coming years will be to improve both the models and the
observational data sets to resolve these uncertainties. The present review will
be made available on an interactive, moderated web page (sedfitting.org), where
the community can access and change the text. The intention is to expand the
text and keep it up to date over the coming years.Comment: 54 pages, 26 figures, Accepted for publication in Astrophysics &
Space Scienc
A compendium of multi-omics data illuminating host responses to lethal human virus infections
Human infections caused by viral pathogens trigger a complex gamut of host responses that limit disease, resolve infection, generate immunity, and contribute to severe disease or death. Here, we present experimental methods and multi-omics data capture approaches representing the global host response to infection generated from 45 individual experiments involving human viruses from the Orthomyxoviridae, Filoviridae, Flaviviridae, and Coronaviridae families. Analogous experimental designs were implemented across human or mouse host model systems, longitudinal samples were collected over defined time courses, and global multi-omics data (transcriptomics, proteomics, metabolomics, and lipidomics) were acquired by microarray, RNA sequencing, or mass spectrometry analyses. For comparison, we have included transcriptomics datasets from cells treated with type I and type II human interferon. Raw multi-omics data and metadata were deposited in public repositories, and we provide a central location linking the raw data with experimental metadata and ready-to-use, quality-controlled, statistically processed multi-omics datasets not previously available in any public repository. This compendium of infection-induced host response data for reuse will be useful for those endeavouring to understand viral disease pathophysiology and network biology
Common variants near MC4R are associated with fat mass, weight and risk of obesity.
To identify common variants influencing body mass index (BMI), we analyzed genome-wide association data from 16,876 individuals of European descent. After previously reported variants in FTO, the strongest association signal (rs17782313, P = 2.9 x 10(-6)) mapped 188 kb downstream of MC4R (melanocortin-4 receptor), mutations of which are the leading cause of monogenic severe childhood-onset obesity. We confirmed the BMI association in 60,352 adults (per-allele effect = 0.05 Z-score units; P = 2.8 x 10(-15)) and 5,988 children aged 7-11 (0.13 Z-score units; P = 1.5 x 10(-8)). In case-control analyses (n = 10,583), the odds for severe childhood obesity reached 1.30 (P = 8.0 x 10(-11)). Furthermore, we observed overtransmission of the risk allele to obese offspring in 660 families (P (pedigree disequilibrium test average; PDT-avg) = 2.4 x 10(-4)). The SNP location and patterns of phenotypic associations are consistent with effects mediated through altered MC4R function. Our findings establish that common variants near MC4R influence fat mass, weight and obesity risk at the population level and reinforce the need for large-scale data integration to identify variants influencing continuous biomedical traits
Milagro limits and HAWC sensitivity for the rate-density of evaporating Primordial Black Holes
postprin
Parental origin of sequence variants associated with complex diseases
To access publisher full text version of this article. Please click on the hyperlink in Additional Links fieldEffects of susceptibility variants may depend on from which parent they are inherited. Although many associations between sequence variants and human traits have been discovered through genome-wide associations, the impact of parental origin has largely been ignored. Here we show that for 38,167 Icelanders genotyped using single nucleotide polymorphism (SNP) chips, the parental origin of most alleles can be determined. For this we used a combination of genealogy and long-range phasing. We then focused on SNPs that associate with diseases and are within 500 kilobases of known imprinted genes. Seven independent SNP associations were examined. Five-one with breast cancer, one with basal-cell carcinoma and three with type 2 diabetes-have parental-origin-specific associations. These variants are located in two genomic regions, 11p15 and 7q32, each harbouring a cluster of imprinted genes. Furthermore, we observed a novel association between the SNP rs2334499 at 11p15 and type 2 diabetes. Here the allele that confers risk when paternally inherited is protective when maternally transmitted. We identified a differentially methylated CTCF-binding site at 11p15 and demonstrated correlation of rs2334499 with decreased methylation of that site.info:eu-repo/grantAgreement/EC/FP7/21807
On the sensitivity of the HAWC observatory to gamma-ray bursts
We present the sensitivity of HAWC to Gamma Ray Bursts (GRBs). HAWC is a very
high-energy gamma-ray observatory currently under construction in Mexico at an
altitude of 4100 m. It will observe atmospheric air showers via the water
Cherenkov method. HAWC will consist of 300 large water tanks instrumented with
4 photomultipliers each. HAWC has two data acquisition (DAQ) systems. The main
DAQ system reads out coincident signals in the tanks and reconstructs the
direction and energy of individual atmospheric showers. The scaler DAQ counts
the hits in each photomultiplier tube (PMT) in the detector and searches for a
statistical excess over the noise of all PMTs. We show that HAWC has a
realistic opportunity to observe the high-energy power law components of GRBs
that extend at least up to 30 GeV, as it has been observed by Fermi LAT. The
two DAQ systems have an energy threshold that is low enough to observe events
similar to GRB 090510 and GRB 090902b with the characteristics observed by
Fermi LAT. HAWC will provide information about the high-energy spectra of GRBs
which in turn could help to understanding about e-pair attenuation in GRB jets,
extragalactic background light absorption, as well as establishing the highest
energy to which GRBs accelerate particles
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