Short-term responses and resistance of soil microbial community structure to elevated CO2 and N addition in grassland mesocosms

Nitrogen (N) addition is known to affect soil microbial communities, but the interactive effects of N addition with otherdrivers of global change remain unclear. The impacts of multiple global changes on the structure of microbial communities may be mediated by specific microbial groups with different life-history strategies. Here, we investigated the combined effects of elevated CO2 and N addition on soil microbial communities using PLFA profiling in a short-term grassland mesocosm experiment. We also examined the linkages between the relative abundance of r- and K-strategist microorganisms and resistance of the microbial community structure to experimental treatments. N addition had a significant effect on microbial community structure, likely driven by concurrent increases in plant biomass and in soil labile C and N. In contrast, microbial community structure did not change under elevated CO2 or show significant CO2 × N interactions. Resistance of soil microbial community structure decreased with increasing fungal/bacterial ratio, but showed a positive relationship with the Gram-positive/Gram-negative bacterial ratio. Our findings suggest that the Grampositive/ Gram-negative bacteria ratio may be a useful indicator of microbial community resistance and that K-strategist abundance may play a role in the short-term stability of microbial communities under global change

Impact of airway surface liquid pH on its bacterial killing capacity : application to cystic fibrosis

La mucoviscidose est la maladie génétique autosomique récessive létale la plus fréquente dans la population caucasienne. Le gène muté code pour la protéine CFTR (Cystic Fibrosis Transmembrane conductance Regulator). CFTR est un canal anionique localisé dans la membrane apicale des épithélia. Il permet notamment le transport d’ions chlorure (Cl-) et bicarbonates (HCO3-). La délétion de la phénylalanine en position 508 (F508del) de CFTR est la mutation la plus fréquente et entraîne un défaut d’adressage de CFTR à la membrane plasmique. L’atteinte respiratoire réalise une bronchopathie obstructive surinfectée qui détermine le pronostic vital de la maladie. Deux mécanismes délétères présents dès la période néonatale vont notamment contribuer à la destruction du tissu pulmonaire : une inflammation exacerbée et auto-entretenue, et une colonisation bactérienne chronique du mucus notamment à Pseudomonas aerugonisa et Staphylococcus aureus. Les mécanismes à l’origine de l'initiation de ce double processus demeurent inconnus. De plus en plus d'arguments plaident pour l'implication des ions HCO3-, donc du pH, dans l'initiation de l'atteinte pulmonaire de la mucoviscidose. En effet, le défaut de CFTR entraîne une diminution de leur sécrétion dans le liquide de surface bronchique (ou Airway Surface Liquid : ASL), ce qui conduit à un pH local anormalement bas. Les ions HCO3- jouent un rôle important dans la physiopathologie bronchique pulmonaire. En effet, ils régulent la rhéologie du mucus et sont impliqués dans l’activité des peptides antimicrobiens, principaux facteurs de la bactéricidie locale et dont l'activité est pH dépendante. Cela a été démontré dans un modèle porcin de mucoviscidose. Ainsi une altération du transport de HCO3- pourrait contribuer à l'hyperviscosité des sécrétions muqueuses, initier la colonisation bactérienne en diminuant le pouvoir bactéricide du liquide de surface respiratoire. Cette hypothèse est la base de mon projet visant à étudier le rôle du transport transépithélial des ions bicarbonates dans la bactéricidie au sein de l’épithélium respiratoire dans la mucoviscidose. La mesure du pH de l’ASL a nécessité la conception d’une enceinte à atmosphère contrôlée. Cet outil a permis la mise en évidence d’une acidité de l’ASL F508del en comparaison du Wild Type (WT), due à un défaut de sécrétion des ions HCO3- dans l’ASL, lui-même induit par une inhibition fonctionnelle du transporteur Cl-/HCO3- SLC26A4 ou pendrine majoritairement et du canal CFTR minoritairement. L’évaluation de la bactéricidie de l’ASL après infection au Staphylococcus aureus révèle une déficience de bactéricidie chez les cellules épithéliales F508del, reliée à l’activité anormale de la pendrine. L’investigation des capacités d’adhésion et d’invasion du Staphylococcus aureus dans nos modèles montre que le défaut de bactéricidie épithélial observé se restreint à l’ASL et incite à poursuivre les recherches sur le rôle du pH de l’ASL dans l’activité de ses peptides antimicrobiens, principale ligne de défense de l’immunité innée respiratoire. Notre travail de restauration du pH de l’ASL avant infection de l’épithélium respiratoire démontre d’ores et déjà l’impact significatif du pH de l’ASL dans la modulation de sa bactéricidie, où la restauration du pH est corrélée à une amélioration de la bactéricidie. Ce travail met en lumière le rôle crucial du pH de l’ASL dans l’appréhension de la physiopathologie de la maladie et sensibilise à de nouvelles voies thérapeutiques, basées sur une restauration du pH de l’ASL et/ou l’utilisation de peptides antimicrobiens pH-indépendant.Cystic fibrosis (CF) is a lethal autosomal recessive disorder caused by mutations in the CF Transmembrane Conductance Regulator (CFTR) gene encoding for a cAMP-activated anionic channel, secreting mainly chloride (Cl-) and bicarbonate (HCO3-) at the apical surface of the epithelia. Most patients are homozygous for the p.PHe508del mutation (F508del). The main cause of morbidity and mortality is obstructive lung disease characterized by exacerbated inflammation and bacterial infection of the airway surface liquid (ASL), a thin layer coating the luminal face of the airway epithelium. ASL bacterial colonization begins from the first hours of life with evidence of Staphylococcus aureus in airway secretions pointing to impaired local defense. However, the defect responsible for this defective bacterial clearance is not clearly understood. It was proposed to be related to decreased mucociliary clearance and abnormal inflammatory responses, but recent studies also show the contribution of ASL in the reduced antimicrobial capacity of ASL in CF airways. An abnormally low ASL pH impairs mucin hydration and solubilization, resulting in hyperviscous mucus, which impedes muco-ciliary clearance. It also reduces the activity of antimicrobial peptides by modulating their native charges and the bactericidal activity of antibiotics. This was supported by studies in newborn CF pigs, which highlighted an abnormally low ASL pH, in association with a defective short-term S. aureus antimicrobial activity. Restoring normal pH in the ASL of CF pigs improved ability to eradicate the bacteria, showing that reduced ASL pH is central to disease pathogenesis. However, there is still controversy about the value of ASL pH in humans. Very recently, a study in young CF children, based on in vivo measurements, showed similar ASL pH values in children with CF to that in children without CF. The mechanisms underlying the ASL pH homeostasis and in particular the balance between HCO3- and proton (H+) secretion are still not known. Shah et al highlighted the role of persistent H+ secretion by ATP12A concomitant to a CFTR-mediated reduced bicarbonate transport, but recent work overexpressing ATP12A in respiratory cells failed to find any pH modification in physiological conditions. Most importantly, there is no clear understanding of the initial host response, when S. aureus bacteria land on the pristine surface of a newborn airway, with a prolonged time of contact and continuous reseeding from infected mucus plugs. This is however crucial to clarify pathogenesis of this early steps to counteract pro-infectious vicious circle and define optimal therapeutic strategy in newborns. We focused on human airways and hypothesized that S. aureus clearance during the first hours of infection was impaired in human airway CF ASL because of lowered ASL pH. To test this hypothesis, we designed bacterial infection experiments within human airway epithelium to mirror the onset of initial S. aureus infection. We then studied the relationship between local bacterial clearance and ASL pH regulation in WT and F508del homozygous human bronchial epithelial cells, with special emphasis on physiologically relevant HCO3- and H+ transporters

Instrumented Roadway Characterized through an Optimized Indicators Method

International audienceIn recent years, pavement instrumentation became a common practice for structural monitoring. Instrumented roadway includes different type of sensors such as strain gauges, accelerometers or geophones. Data processing consists often in extracting different values such as extremum, number of positives or negatives peaks, calculate threshold, on so on. These values are generally representative of variations in the whole structure, but make it more difficult to follow a specific characteristic of the structure. To overcome this limitation, an original method has been defined. It consists in finding a weighting function of the signal that is particularly sensitive to a specific characteristic of the structure without being sensitive to the other characteristics. This weighting function is calculated using a model of the structure. The sensitivity of the response of the simulated sensor to different variations in the characteristics of the structure is studied. From these sensitivities, it is possible to define specific weighting functions. The application of these weighting functions to the measured signals makes it possible to deduce indicators specific to different characteristics of the structure. This method has been applied during an experiment on the Nantes fatigue carousel. Stain gauges equipped the roadways and lot of signals has been recorded during the loading phase. A viscoelastic pavement model has been defined and the response under a running load was calculated. Optimal weighting functions have been estimated and specific indicators constructed. Stain gauge measurements have been processed to calculate the indicator; The paper presents a comparison between constructed indicators and conventionally used indicators

Surface hydration protects cystic fibrosis airways from infection by restoring junctional networks

Defective hydration of airway surface mucosa is associated with recurrent lung infection in cystic fibrosis (CF), a disease caused by CF transmembrane conductance regulator (CFTR) gene mutations. Whether the composition and/or presence of an airway surface liquid (ASL) is sufficient to prevent infection remains unclear. The susceptibility to infection of polarized wild type andCFTRknockdown (CFTR-KD) airway epithelial cells was determined in the presence or absence of a healthy ASL or physiological saline. CFTR-KD epithelia exhibited strong ASL volume reduction, enhanced susceptibility to infection, and reduced junctional integrity. Interestingly, the presence of an apical physiological saline alleviated disruption of the airway epithelial barrier by stimulating essential junctional protein expression. Thus, rehydrated CFTR-KD cells were protected from infection despite normally intense bacterial growth. This study indicates that an epithelial integrity gatekeeper is modulated by the presence of an apical liquid volume, irrespective of the liquid's composition and of expression of a functional CFTR

Apical dehydration impairs the cystic fibrosis airway epithelium barrier via a β1-integrin/YAP1 pathway

Defective hydration of airway surface mucosa is associated with lung infection in cystic fibrosis (CF), partly caused by disruption of the epithelial barrier integrity. Although rehydration of the CF airway surface liquid (ASL) alleviates epithelium vulnerability to infection by junctional protein expression, the mechanisms linking ASL to barrier integrity are unknown. We show here the strong degradation of YAP1 and TAZ proteins in well-polarized CF human airway epithelial cells (HAECs), a process that was prevented by ASL rehydration. Conditional silencing ofYAP1in rehydrated CF HAECs indicated that YAP1 expression was necessary for the maintenance of junctional complexes. A higher plasma membrane tension in CF HAECs reduced endocytosis, concurrent with the maintenance of activeβ1-integrin ectopically located at the apical membrane. Pharmacological inhibition ofβ1-integrin accumulation restored YAP1 expression in CF HAECs. These results indicate that dehydration of the CF ASL affects epithelial plasma membrane tension, resulting in ectopic activation of aβ1-integrin/YAP1 signaling pathway associated with degradation of junctional proteins

Vav3 mediates pseudomonas aeruginosa adhesion to the cystic fibrosis airway epithelium

Pseudomonas aeruginosa (Pa) represents the leading cause of airway infection in cystic fibrosis (CF). Early airways colonization can be explained by enhanced adhesion of Pa to the respiratory epithelium. RNA sequencing (RNA-seq) on fully differentiated primary cultures of airway epithelial cells from CF and non-CF donors predict that VAV3, β1 INTEGRIN, and FIBRONECTIN genes are significantly enriched in CF. Indeed, Vav3 is apically overexpressed in CF, associates with active β1 integrin luminally exposed, and increases fibronectin deposition. These luminal microdomains, rich in fibronectin and β1 integrin and regulated by Vav3, mediate the increased Pa adhesion to the CF epithelium. Interestingly, Vav3 inhibition normalizes the CF-dependent fibronectin and β1-integrin ectopic expression, improves the CF epithelial integrity, and prevents the enhanced Pa trapping to the CF epithelium. Through its capacity to promote a luminal complex with active β1 integrin and fibronectin that favors bacteria trapping, Vav3 may represent a new target in CF

Acute effects of brain irradiation with X-ray/Proton beam on circulating immune cells in rodents: A data and physiology-based modeling approach

National audienc

Acute effects of brain irradiation with X-ray/Proton beam on circulating immune cells in rodents: A data and physiology-based modeling approach

National audienc

Early effects of different brain radiotherapy modalities on circulating leucocyte subpopulations in rodents

CERVOXYInternational audienceRésumé :Purposes: Lymphopenia is extensively studied, but not circulating leucocyte subpopulations, which however have distinct roles in tumor tolerance. Proton therapy has been shown to have a lesser impact on the immune system than conventional X-ray radiotherapy through lower dose exposure to healthy tissues. We explored the differential effects of brain X-ray and proton irradiation on circulating leucocyte subpopulations. Materials and methods: Leucocyte subpopulation count from tumor-free mice were obtained 12hours after 4 fractions of 2.5Gy. The relationships between irradiation type (X-rays or protons), irradiated volume (whole-brain/hemi-brain) and dose rate (1 or 2Gy/min) with circulating leucocyte subpopulations (T-CD4+, T-CD8+, B, and NK-cells, neutrophils, and monocytes) were investigated using linear regression and tree-based modeling approaches. Relationships between dose maps (brain, vessels, lymph nodes (LNs)) and leucocyte subpopulations were analyzed and applied to construct the blood dose model, assessing the hypothesis of a direct lymphocyte-killing effect in radiation-induced lymphopenia. Results: Radiation-induced lymphopenia occurred after X-ray but not proton brain irradiation in lymphoid subpopulations (T-CD4+, T-CD8+, B, and NK-cells). There was an increase in neutrophil counts following protons but not X-rays. Monocytes remained unchanged under both X-rays and protons. Besides irradiation type, irradiated volume and dose rate had a significant impact on NK-cell, neutrophil and monocyte levels but not T-CD4+, T-CD8+, and B-cells. The dose to the blood had a heterogeneous impact on leucocyte subpopulations: neutrophil counts remained stable with increasing dose to the blood, while lymphocyte counts decreased with increasing dose (T-CD8+- cells>T-CD4+-cells>B-cells>NK-cells). Direct cell-killing effect of the dose to the blood mildly contributed to radiation-induced lymphopenia. LN exposure significantly contributed to lymphopenia and partially explained the distinct impact of irradiation type on circulating lymphocytes. Conclusions: Leucocyte subpopulations reacted differently to X-ray or proton brain irradiation. This difference could be partly explained by LN exposure to radiation dose. Further researches and analyses on other biological processes and interactions between leucocyte subpopulations are ongoing. The various mechanisms underlying leucocyte subpopulation changes under different irradiation modalities may have implications for the choice of radiotherapy modalities and their combination with immunotherapy in brain cancer treatment