Biomass partitioning and gas exchange parameters in different Musa cultivars as influenced by natural shade

Poster presented at Tropentag 2011 Development on the Margin. Bonn (Germany), 3-7 Oct 2011

Photosynthesis of three dessert banana cultivars along an altitudinal gradient

Poster presented at Tropentag 2011 - Development on the Margin. Bonn (Germany), 3-7 Oct 2011

The response of Musa cultivar root systems to a tree shade gradient

Poster presented at Tropentag 2011 - Development on the Margin. Bonn (Germany), 3-7 Oct 2011

Big data from small tissue extraction of high-quality RNA for RNA-Sequencing from different oilseed Brassica seed tissues during seed development

Background Obtaining high-quality RNA for gene expression analyses from different seed tissues is challenging due to the presence of various contaminants, such as polyphenols, polysaccharides and lipids which interfere with RNA extraction methods. At present, the available protocols for extracting RNA from seeds require high amounts of tissue and are mainly focused on extracting RNA from whole seeds. However, extracting RNA at the tissue level enables more detailed studies regarding tissue specific transcriptomes during seed development. Results Seeds from heart stage embryo to mature developmental stages of Brassica napus and B. oleracea were sampled for isolation of the embryo, endosperm and seed coat tissues. Ovules and ovary wall tissue were also collected from pre-fertilized buds. Subsequent to testing several RNA extraction methods, we determined that modifications applied to E.Z.N.A. Plant RNA and Picopure RNA Isolation kit extraction methods resulted in RNA with high yield and quality. Furthermore, the use of polyvinylpolypyrrolidone for the extraction of RNA from seed coats and endosperm at green seed stage resulted in high-quality RNA. As a result of the introduced modifications to established RNA extraction methods, the RNA from all the above-mentioned tissues presented clear 28S and 18S bands and high RIN values, ranging from 7.0 to 10.0. The protocols reported in this study are not only suitable for different and challenging seed tissue types, but also enable the extraction of high-quality RNA using only 2 to 3 mg of starting tissue. Conclusions Here, we present efficient, reproducible and reliable high-quality RNA extraction methods for diverse oilseed Brassica spp reproductive tissue types including pre-fertilization and developing seed tissues for diploid and polyploid species. The high-quality RNA obtained is suitable for RNA-Sequencing and subsequent gene expression analysis

Arrival directions of large air showers, low-mu showers and old-age low-mu air showers observed at St. Chacaltaya

Arrival directions of air showers with primary energies in the range 10 to the 16.5 power eV to 10 to the 18th power eV show the first harmonic in right ascension (RA) with amplitude of 2.7 + or - 1.0% and phase of 13-16h. However, the second harmonic in RA slightly seen for showers in the range 10 to the 18th power eV to 10 to the 19th power eV disappeared by accumulation of observed showers. The distribution of arrival directions of low-mu air showers with primary energies around 10 to the 15th power eV observed at Chacaltaya from 1962 to 1967 is referred to, relating to the above-mentioned first harmonic. Also presented in this paper are arrival directions of old-age low-mu air showers observed at Chacaltaya from 1962 to 1967, for recent interest in gamma-ray air showers

Energetic delayed hadrons in large air showers observed at 5200m above sea level

Energetic delayed hadrons in air showers with electron sizes in the range 10 to the 6th power to 10 to the 9th power were studied by observing the delayed bursts produced in the shield of nine square meter scintillation detectors in the Chacaltaya air-shower array. The frequency of such delayed burst is presented as a function of electron size, core distance and sec theta

A comparative study between the biofiltration for air contaminated with limonene or butyric acid using a combination of olfactometric, physico-chemical and genomic approaches

A multidisciplinary analysis based on physico-chemical, olfactometric and microbiological perspectives was performed to compare the biofiltration of air contaminated with limonene or butyric acid. Two biofilters were subjected to butyric acid gaseous streams: one was filled with wood chips and sewage sludge compost (BF B-1) and the other with wood chips only (BF B-2). Similarly, two other biofilters were subjected to a gaseous stream containing limonene, with the same beds (BF L-1 and BF L-2, respectively). Although the biofilters fed with butyric acid received higher odor loads (280–3280 ouE/m2·s for BF B-1 and 135–1460 ouE/m2·s for BF B-2) than the biofilters treating limonene (30–170 ouE/m2·s for BF L-1 and 15–130 ouE/m2·s for BF L-2), the first systems achieved odor removal efficiencies greater than 90% during most of the biofiltration time, whereas in the limonene biofilters, these efficiencies never exceeded 70%. Regarding the packed beds, genomic analysis of the microbial communities showed a wider distribution of phyla (Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria) in compost-wood biofilters than in wood chips systems where Proteobacteria was clearly predominant. This study reveals the importance of considering both the nature of the biofiltered compounds and the packed bed composition in biofiltration operations

A causal inference and Bayesian optimisation framework for modelling multi-trait relationships—Proof-of-concept using Brassica napus seed yield under controlled conditions

The improvement of crop yield is a major breeding target and there is a long history of research that has focussed on unravelling the mechanisms and processes that contribute to yield. Quantitative prediction of the interplay between morphological traits, and the effects of these trait-trait relationships on seed production remains, however, a challenge. Consequently, the extent to which crop varieties optimise their morphology for a given environment is largely unknown. This work presents a new combination of existing methodologies by framing crop breeding as an optimisation problem and evaluates the extent to which existing varieties exhibit optimal morphologies under the test conditions. In this proof-of-concept study using spring and winter oilseed rape plants grown under greenhouse conditions, we employ causal inference to model the hierarchically structured effects of 27 morphological yield traits on each other. We perform Bayesian optimisation of seed yield, to identify and quantify the morphologies of ideotype plants, which are expected to be higher yielding than the varieties in the studied panels. Under the tested growth conditions, we find that existing spring varieties occupy the optimal regions of trait-space, but that potentially high yielding strategies are unexplored in extant winter varieties. The same approach can be used to evaluate trait (morphology) space for any environment

Magnetic dispersive solid phase microextraction coupled with on-line chemical vapor generation method to extraction/preconcentration of mercury from environmental samples and determination by graphite furnace atomic absorption spectrometry.

Mercury (Hg) is classified as priority hazardous substances. Concentrations found in the aquatic environment are at trace levels as result of natural processes, such as erosion and volcanism, and anthropogenic discharges related mainly to industrial and mining activities. Mercury is one of the most potent neurotoxins known, showing a high number of adverse health effects in animals and humans. For this reason, a simple and rapid method for the determination and preconcentration of mercury in environmental waters is proposed. This work is based on magnetic dispersive solid phase microextraction (MDSPME) coupled with on-line chemical vapour generation (CVG). Graphite furnace atomic absorption spectrometry (GFAAS) was employed for the quantification of Hg. In the preconcentration step, a shell structured Fe3O4@graphene oxide was suspended in the ionic liquid carrier (1-n-butyl-3-metilimidazolium tetrafluoroborate [BMIM][BF4]), obtaining a stable colloidal suspension called ferrofluid. This sorbent possesses as large contact surface area and a high density of polar groups on its surface. The nanoparticles, when finely dispersed in the sample solution, result in almost complete extraction of Hg within a few seconds. All experimental and instrumental variables were optimized and the method was adequately validated by the analysis of certified reference materials of environmental waters. Acknowledgements The authors would like to thank Plan Propio “Proyecto Puente” de la Universidad de Málaga for financial support of this work.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tec