93 research outputs found
Algorithms for 3D rigidity analysis and a first order percolation transition
A fast computer algorithm, the pebble game, has been used successfully to
study rigidity percolation on 2D elastic networks, as well as on a special
class of 3D networks, the bond-bending networks. Application of the pebble game
approach to general 3D networks has been hindered by the fact that the
underlying mathematical theory is, strictly speaking, invalid in this case. We
construct an approximate pebble game algorithm for general 3D networks, as well
as a slower but exact algorithm, the relaxation algorithm, that we use for
testing the new pebble game. Based on the results of these tests and additional
considerations, we argue that in the particular case of randomly diluted
central-force networks on BCC and FCC lattices, the pebble game is essentially
exact. Using the pebble game, we observe an extremely sharp jump in the largest
rigid cluster size in bond-diluted central-force networks in 3D, with the
percolating cluster appearing and taking up most of the network after a single
bond addition. This strongly suggests a first order rigidity percolation
transition, which is in contrast to the second order transitions found
previously for the 2D central-force and 3D bond-bending networks. While a first
order rigidity transition has been observed for Bethe lattices and networks
with ``chemical order'', this is the first time it has been seen for a regular
randomly diluted network. In the case of site dilution, the transition is also
first order for BCC, but results for FCC suggest a second order transition.
Even in bond-diluted lattices, while the transition appears massively first
order in the order parameter (the percolating cluster size), it is continuous
in the elastic moduli. This, and the apparent non-universality, make this phase
transition highly unusual.Comment: 28 pages, 19 figure
The orbit rigidity matrix of a symmetric framework
A number of recent papers have studied when symmetry causes frameworks on a
graph to become infinitesimally flexible, or stressed, and when it has no
impact. A number of other recent papers have studied special classes of
frameworks on generically rigid graphs which are finite mechanisms. Here we
introduce a new tool, the orbit matrix, which connects these two areas and
provides a matrix representation for fully symmetric infinitesimal flexes, and
fully symmetric stresses of symmetric frameworks. The orbit matrix is a true
analog of the standard rigidity matrix for general frameworks, and its analysis
gives important insights into questions about the flexibility and rigidity of
classes of symmetric frameworks, in all dimensions.
With this narrower focus on fully symmetric infinitesimal motions, comes the
power to predict symmetry-preserving finite mechanisms - giving a simplified
analysis which covers a wide range of the known mechanisms, and generalizes the
classes of known mechanisms. This initial exploration of the properties of the
orbit matrix also opens up a number of new questions and possible extensions of
the previous results, including transfer of symmetry based results from
Euclidean space to spherical, hyperbolic, and some other metrics with shared
symmetry groups and underlying projective geometry.Comment: 41 pages, 12 figure
Internal states of model isotropic granular packings. I. Assembling process, geometry and contact networks
This is the first paper of a series of three, reporting on numerical
simulation studies of geometric and mechanical properties of static assemblies
of spherical beads under an isotropic pressure. Frictionless systems assemble
in the unique random close packing (RCP) state in the low pressure limit if the
compression process is fast enough, slower processes inducing traces of
crystallization, and exhibit specific properties directly related to
isostaticity of the force-carrying structure. The different structures of
frictional packings assembled by various methods cannot be classified by the
sole density. While lubricated systems approach RCP densities and coordination
number z^*~=6 on the backbone in the rigid limit, an idealized "vibration"
procedure results in equally dense configurations with z^*~=4.5. Near neighbor
correlations on various scales are computed and compared to available
laboratory data, although z^* values remain experimentally inaccessible. Low
coordination packings have many rattlers (more than 10% of the grains carry no
force), which should be accounted for on studying position correlations, and a
small proportion of harmless "floppy modes" associated with divalent grains.
Frictional packings, however slowly assembled under low pressure, retain a
finite level of force indeterminacy, except in the limit of infinite friction.Comment: 29 pages. Published in Physical Review
Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors
Background Suicide is a leading cause of death worldwide, and nonfatal suicide attempts, which occur far more frequently, are a major source of disability and social and economic burden. Both have substantial genetic etiology, which is partially shared and partially distinct from that of related psychiatric disorders. Methods We conducted a genome-wide association study (GWAS) of 29,782 suicide attempt (SA) cases and 519,961 controls in the International Suicide Genetics Consortium (ISGC). The GWAS of SA was conditioned on psychiatric disorders using GWAS summary statistics via multitrait-based conditional and joint analysis, to remove genetic effects on SA mediated by psychiatric disorders. We investigated the shared and divergent genetic architectures of SA, psychiatric disorders, and other known risk factors. Results Two loci reached genome-wide significance for SA: the major histocompatibility complex and an intergenic locus on chromosome 7, the latter of which remained associated with SA after conditioning on psychiatric disorders and replicated in an independent cohort from the Million Veteran Program. This locus has been implicated in risk-taking behavior, smoking, and insomnia. SA showed strong genetic correlation with psychiatric disorders, particularly major depression, and also with smoking, pain, risk-taking behavior, sleep disturbances, lower educational attainment, reproductive traits, lower socioeconomic status, and poorer general health. After conditioning on psychiatric disorders, the genetic correlations between SA and psychiatric disorders decreased, whereas those with nonpsychiatric traits remained largely unchanged. Conclusions Our results identify a risk locus that contributes more strongly to SA than other phenotypes and suggest a shared underlying biology between SA and known risk factors that is not mediated by psychiatric disorders.Peer reviewe
Avoidance Expression in Rats as a Function of Signal-Shock Interval: Strain and Sex Differences
Inbred Wistar Kyoto (WKY) rats express inhibited temperament, increased sensitivity to stress, and exaggerated expressions of avoidance. A long-standing observation for lever press escape/avoidance learning in rats is the duration of the warning signal (WS) determines whether avoidance is expressed over escape. Outbred female Sprague-Dawley (SD) rats trained with a 10-s WS efficiently escaped, but failed to exhibit avoidance; avoidance was exhibited to a high degree with WSs longer than 20-s. We examined this longstanding WS duration function and extended it to male SD and male and female WKY rats. A cross-over design with two WS durations (10 s or 60 s) was employed. Rats were trained (20 trials/session) in four phases: acquisition (10 sessions), extinction (10 sessions), re-acquisition (8 sessions) and re-extinction (8 sessions). Consistent with the literature, female and male SD rats failed to express avoidance to an appreciable degree with a 10-s WS. When these rats were switched to a 60-s WS, performance levels in the initial session of training resembled the peak performance of rats trained with a 60-s WS. Therefore, the avoidance relationship was acquired, but not expressed at 10-s WS. Further, poor avoidance at 10-s does not adversely affect expression at 60-s. Failure to express avoidance with a 10-s WS likely reflects contrasting reinforcement value of avoidance, not a reduction in the amount of time available to respond or competing responses. In contrast, WKY rats exhibited robust avoidance with a 10-s WS, which was most apparent in female WKY rats. Exaggerated expression of avoidances by WKY rats, especially female rats, further confirms this inbred strain as a model of anxiety vulnerability
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