Flow measurement using micro-PIV and related temperature distributions within evaporating sessile drops of self-rewetting mixtures of 1-pentanol and water

This paper was presented at the 4th Micro and Nano Flows Conference (MNF2014), which was held at University College, London, UK. The conference was organised by Brunel University and supported by the Italian Union of Thermofluiddynamics, IPEM, the Process Intensification Network, the Institution of Mechanical Engineers, the Heat Transfer Society, HEXAG - the Heat Exchange Action Group, and the Energy Institute, ASME Press, LCN London Centre for Nanotechnology, UCL University College London, UCL Engineering, the International NanoScience Community, www.nanopaprika.eu.Recently interest has arisen in the use of so-called self-rewetting mixtures for micro-scale heat transfer systems. Such fluids, in which the surface tension can increase with increasing temperature, are expected to offer superior evaporative cooling performance by extending the region of operation before dryout of the heated surface sets in. Whilst improved performance has been shown in some practical situations using these fluids, it is not entirely clear as to the mechanism of such improvements. We have studied the flow within evaporating sessile drops of 1-pentanol-water mixtures using micro-PIV and have observed three stages in the evaporation process. During the first stage there appears to be a single toroidal vortex with flow inwards along the base of the drop. The vortex only occupies the central region of the drop and appears to pulsate, reducing in size during evaporation. This is followed by a second transition stage to a third stage in which the flow is directed radially outward, as observed by us for pure water droplet evaporation and in the latter stages of ethanol/water drop evaporation. Temperature measurements, using IR thermography suggest that the initial stage of evaporation may be controlled by thermal Marangoni effects as opposed to the concentration driven Marangoni flows postulated for ethanol-water mixtures

GPSDB: a new database for synonyms expansion of gene and protein names

Summary: We present a new database, GPSDB (Gene and Protein Synonyms DataBase) which collects gene/protein names, in a species specific way, from 14 main biological resources. A web-based search interface gives access to the database: given a gene/protein name, it retrieves all synonyms for this entity and queries Medline with a set of user-selected terms. Availability: GPSDB is freely available from http://biomint.oefai.at/ Contact: [email protected]

Manus 2006 : hydrothermal systems in the Eastern Manus Basin: fluid chemistry and magnetic structure as guides to subseafloor processes

Cruise Report R/V Melville MAGELLAN-06, Rabaul, Papua New Guinea to Suva, Fiji July 21st 2006 to September 1st 2006The hydrothermal systems in the Manus Basin of Papua New Guinea (PNG) were comprehensively investigated through a combination of sampling and mapping using the Remotely-Operated Vehicle (ROV) Jason, the autonomous underwater vehicle (AUV) ABE (Autonomous Benthic Explorer) and ship-based CTD work and multi-beam bathymetric mapping using the RV Melville. The objectives of the cruise (July 21st to Sept. 1st, 2006) were to identify the tectonic/geologic settings of the vent systems, examine the interactions of seawater with felsic rocks that constitute the high silica end-member range of seafloor basement compositions, determine the extent of volatile magmatic inputs into these systems and to examine the evolution of hydrothermal activity through time. The first 10-day portion of the cruise was funded by Nautilus Minerals in a collaborative research effort to examine the Manus Spreading Center and the Vienna Woods basalt-hosted hydrothermal vent systems. The second 32-day portion of the cruise, funded by the National Science Foundation (NSF), focused on the felsic-hosted hydrothermal systems of the PACMANUS (Papua New Guinea – Australia – Canada Manus) vents drilled by the Ocean Drilling Program (ODP) in 2000 and the nearby seafloor volcano vent systems of Desmos and SuSu Knolls. Nautilus Minerals generously funded the add-on use of ABE throughout the NSF program allowing for high resolution mapping to be completed on all the major vent sites within the eastern Manus Basin. A total of 30 ROV dives (497 operational hours) were completed collecting 198 vent sulfides, 83 altered substrate and 43 fresh lava samples along with 104 black, gray and clear fluid samples using gastight and major samplers. ABE successfully completed 14 high resolution bathymetric, CTD and magnetic field mapping dives covering a total of 364 line km of seafloor. We located and mapped in detail the Vienna Woods and nearby Tufar-2 and -3 vent areas on Manus Spreading Center documenting the strong tectonic control on the distribution of the vent systems and the presence of reduced magnetization i.e. “magnetic burnholes”, that help define the lateral extent of the vent fields. The Vienna Woods vent systems (273°-285°C) form treetrunk- like chimneys 5-15 m tall, that emit black to gray fluids with pH and compositions similar to other documented midocean ridge (MOR) systems like the East Pacific Rise. At PACMANUS, high-resolution mapping by ABE reveals a distinctive seafloor morphology associated with dacitic lava flows along with discrete magnetic burnholes associated with the active venting systems of Roman Ruins, Satanic Mills, Snowcap, Tsukushi and a new vigorous vent system discovered southeast of the Satanic Mills area named Fenway. Another vent field in its waning stages was also discovered ~8 km northeast of PACMANUS on the Northeast Pual Ridge. At PACMANUS, the 40 m diameter Fenway mound hosts outcrops of massive anhydrite on the seafloor beneath the sulfide chimneys, a rare occurrence as anhydrite is unstable at ambient seafloor conditions. Fenway is also boiling (356°C, 172 bar) with two-phase fluid producing a ”flashing” phenomenon when the Jason lights illuminated the vent orifices. The five PACMANUS vents (271° – 356°C) have ubiquitous low pH (2.3 to 2.8) relative to Vienna Woods and typical MOR fluids, presumably reflecting water-rock reaction with the felsic hosted lava, input of magmatic volatiles and the subsurface deposition of metal sulfides. We investigated two strongly magmatically influenced vent systems associated with seafloor volcanoes. Desmos is a breached caldera with white smokers (70°-115°C) that are highly acidic (pH 1 – 1.5) and sulfur lava flows. SuSu Knolls and the adjacent Suzette mound (Solwara-1 of Nautilus Minerals) were mapped in detail and sampled intensively. Hydrothermal activity at SuSu Knolls showed a remarkable range from boiling black smokers to white sulfur-rich fluids, native sulfur flows and massive anhydrite outcrops. Vent fluids from North Su (48° – 325°C) are 2 characterized by a measured pH of 0.87, more than an order of magnitude more acidic than any deep-sea vent fluid sampled to date. Many of the low pH fluids sampled at North Su and Desmos were actively precipitating native sulfur creating thick plumes of dense white smoke. In general, sampled fluids show a considerable range in pH and gas contents, sometimes within individual hydrothermal fields. The pronounced variability of fluid chemistry within 10’s to 100’s of m at North Su is probably unparalleled in systems studied to date. The most plausible explanation for the observed variability is that different fluid-rock reaction pathways are expressed in regimes of variable magmatic volatile input and extent of subsurface cooling. This hypothesis is supported by the distribution of alteration types at the seafloor, where the occurrence of advanced argillic alteration - that relates to interactions with acid-sulfate waters such as sampled at Desmos and North Su – is patchy and spatially confined to patches of active (Desmos, North Su) and past (Snowcap) venting of such fluids. In relationship to the ODP drilling results at PACMANUS we identified and sampled examples of advanced argillic rock alteration similar to that seen in the drill core. Good examples came from Snowcap and from the North Su pillar. We sampled highly clay-altered basement from just underneath extinct chimney complexes at two locations in the Satanic Mills hydrothermal field. Both samples have dense networks of sulfide veins and may represent the stockwork or feeder zone through which hydrothermal fluids rise up to the seafloor. These samples, in addition to the other altered rock types recovered, will provide useful stepping stones in bridging the knowledge gap between the extensive surface sampling now accomplished and the basement rocks recovered by ODP, where coring was almost nil shallower than 40 m subseafloor depth. Overall, the quality and quantity of solid and fluid samples that can be put in a direct geochemical context is remarkably high. This unique dataset encompasses a broad range of geological environments that includes hydrothermal activity in basalt-hosted oceanic style spreading centers to hydrothermal systems associated with arc-style volcanism. For the first time, alteration assemblages that are commonly observed in drillcore and outcrop on land have been observed in the aqueous environment responsible for their formation.NSF Grant – OCE0327448; NSF Grant – OCE042559

Prebiotic Organic Microstructures

Micro- and sub-micrometer spheres, tubules and fiber-filament soft structures have been synthesized in our experiments conducted with 3 MeV proton irradiations of a mixture of simple inorganic constituents, CO, N2 and H2O. We analysed the irradiation products, with scanning electron microscopy (SEM) and atomic force microscopy (AFM). These laboratory organic structures produced wide variety of proteinous and non-proteinous amino acids after HCl hydrolysis. The enantiomer analysis for D-, L- alanine confirmed that the amino acids were abiotically synthesized during the laboratory experiment. Considering hydrothermal activity, the presence of CO2 and H2, of a ferromagnesian silicate mineral environment, of an Earth magnetic field which was much less intense during Archean times than nowadays and consequently of a proton excitation source which was much more abundant, we propose that our laboratory organic microstructures might be synthesized during Archean times. We show similarities in morphology and in formation with some terrestrial Archean microstructures and we suggest that some of the observed Archean carbon spherical and filamentous microstructures might be composed of abiogenic organic molecules. We further propose a search for such prebiotic organic signatures on Mars. This article has been posted on Nature precedings on 21 July 2010 [1]. Extinct radionuclides as source of excitation have been replaced by cosmic radiations which were much more intense 3.5 Ga ago because of a much less intense Earth magnetic field. The new version of the article has been presented at the ORIGINS conference in Montpellier in july 2011 [2] and has since been published in Origins of Life and Evolution of Biospheres 42 (4) 307-316, 2012. 
DOI: 10.1007/s11084-012-9290-5 

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Subseafloor microbial communities in hydrogen-rich vent fluids from hydrothermal systems along the Mid-Cayman Rise

© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Environmental Microbiology 18 (2016): 1970–1987, doi:10.1111/1462-2920.13173.Warm fluids emanating from hydrothermal vents can be used as windows into the rocky subseafloor habitat and its resident microbial community. Two new vent systems on the Mid-Cayman Rise each exhibits novel geologic settings and distinctively hydrogen-rich vent fluid compositions. We have determined and compared the chemistry, potential energy yielding reactions, abundance, community composition, diversity, and function of microbes in venting fluids from both sites: Piccard, the world's deepest vent site, hosted in mafic rocks; and Von Damm, an adjacent, ultramafic-influenced system. Von Damm hosted a wider diversity of lineages and metabolisms in comparison to Piccard, consistent with thermodynamic models that predict more numerous energy sources at ultramafic systems. There was little overlap in the phylotypes found at each site, although similar and dominant hydrogen-utilizing genera were present at both. Despite the differences in community structure, depth, geology, and fluid chemistry, energetic modelling and metagenomic analysis indicate near functional equivalence between Von Damm and Piccard, likely driven by the high hydrogen concentrations and elevated temperatures at both sites. Results are compared with hydrothermal sites worldwide to provide a global perspective on the distinctiveness of these newly discovered sites and the interplay among rocks, fluid composition and life in the subseafloor.National Aeronautics and Space Administration Grant Number: NNX09AB756; Alfred P. Sloan Foundation; NSF Grant Number: OCE10618

Chemistry of hot springs along the Eastern Lau Spreading Center

Author Posting. © The Author(s), 2010. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 75 (2011): 1013-1038, doi:10.1016/j.gca.2010.12.008.The Eastern Lau Spreading Center (ELSC) is the southernmost part of the back-arc spreading axis in the Lau Basin, west of the Tonga trench and the active Tofua volcanic arc. Over its 397-km length it exhibits large and systematic changes in spreading rate, magmatic/tectonic processes, and proximity to the volcanic arc. In 2005 we collected 81 samples of vent water from six hydrothermal fields along the ELSC. The chemistry of these waters varies both within and between vent fields, in response to changes in substrate composition, temperature and pressure, pH, water/rock ratio, and input from magmatic gases and subducted sediment. Hot-spring temperatures range from 229º to 363ºC at the five northernmost fields, with a general decrease to the south that is reversed at the Mariner field. The southernmost field, Vai Lili, emitted water at up to 334°C in 1989 but had a maximum venting temperature of only 121ºC in 2005, due to waning activity and admixture of bottom seawater into the subseafloor plumbing system. Chloride varies both within fields and from one field to another, from a low of 528 mmol/kg to a high of 656 mmol/kg, and may be enriched by phase separation and/or leaching of Cl from the rock. Concentrations of the soluble elements K, Rb, Cs, and B likewise increase southward as the volcanic substrate becomes more silica-rich, especially on the Valu Fa Ridge. Iodine and δ7Li increase southward, and δ11B decreases as B increases, apparently in response to increased input from subducted sediment as the arc is approached. Species that decrease southward as temperature falls are Si, H2S, Li, Na/Cl, Fe, Mn, and 87Sr/86Sr, whereas pH, alkalinity, Ca, and Sr increase. Oxygen isotopes indicate a higher water/rock ratio in the three systems on Valu Fa Ridge, consistent with higher porosity in more felsic volcanic rocks. Vent waters at the Mariner vent field on the Valu Fa Ridge are significantly hotter, more acid and metal-rich, less saline, and richer in dissolved gases and other volatiles, including H2S, CO2, and F, than the other vent fields, consistent with input of magmatic gases. The large variations in geologic and geophysical parameters produced by back-arc spreading along the ELSC, which exceed those along mid-ocean ridge spreading axes, produce similar large variations in the composition of vent waters, and thus provide new insights into the processes that control the chemistry of submarine hot springs.We thank the U.S. National Science Foundation and its RIDGE 2000 Program for funding this study via grants OCE0241826 (to MJM), OCE0242902 (to PJM), OCE0241796 (to JSS, MKT), and OCE0242088 (to CGW), as well as the Deep Ocean Exploration Institute at WHOI (to GP, ER)

Effect of Cyclooxygenase(COX)-1 and COX-2 inhibition on furosemide-induced renal responses and isoform immunolocalization in the healthy cat kidney

BACKGROUND: The role of cyclooxygenase(COX)-1 and COX-2 in the saluretic and renin-angiotensin responses to loop diuretics in the cat is unknown. We propose in vivo characterisation of isoform roles in a furosemide model by administering non-steroidal anti-inflammatory drugs (NSAIDs) with differing selectivity profiles: robenacoxib (COX-2 selective) and ketoprofen (COX-1 selective). RESULTS: In this four period crossover study, we compared the effect of four treatments: placebo, robenacoxib once or twice daily and ketoprofen once daily concomitantly with furosemide in seven healthy cats. For each period, urine and blood samples were collected at baseline and within 48 h of treatment starting. Plasma renin activity (PRA), plasma and urinary aldosterone concentrations, glomerular filtration rate (GFR) and 24 h urinary volumes, electrolytes and eicosanoids (PGE(2), 6-keto-PGF1(α,) TxB(2)), renal injury biomarker excretions [N-acetyl-beta-D-glucosaminidase (NAG) and Gamma-Glutamyltransferase] were measured. Urine volume (24 h) and urinary sodium, chloride and calcium excretions increased from baseline with all treatments. Plasma creatinine increased with all treatments except placebo, whereas GFR was significantly decreased from baseline only with ketoprofen. PRA increased significantly with placebo and once daily robenacoxib and the increase was significantly higher with placebo compared to ketoprofen (10.5 ± 4.4 vs 4.9 ± 5.0 ng ml(−1) h(−1)). Urinary aldosterone excretion increased with all treatments but this increase was inhibited by 75 % with ketoprofen and 65 % with once daily robenacoxib compared to placebo. Urinary PGE(2) excretion decreased with all treatments and excretion was significantly lower with ketoprofen compared to placebo. Urinary TxB(2) excretion was significantly increased from baseline only with placebo. NAG increased from baseline with all treatments. Immunohistochemistry on post-mortem renal specimens, obtained from a different group of cats that died naturally of non-renal causes, suggested constitutive COX-1 and COX-2 co-localization in many renal structures including the macula densa (MD). CONCLUSIONS: These data suggest that both COX-1 and COX-2 could generate the signal from the MD to the renin secreting cells in cats exposed to furosemide. Co-localization of COX isoenzymes in MD cells supports the functional data reported here. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12917-015-0598-z) contains supplementary material, which is available to authorized users

Rare earth element abundances in hydrothermal fluids from the Manus Basin, Papua New Guinea : indicators of sub-seafloor hydrothermal processes in back-arc basins

Author Posting. © The Author(s), 2010. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Geochimica et Cosmochimica Acta 74 (2010): 5494-5513, doi:10.1016/j.gca.2010.07.003.Rare earth element (REE) concentrations are reported for a large suite of seafloor vent fluids from four hydrothermal systems in the Manus back–arc basin (Vienna Woods, PACMANUS, DESMOS and SuSu Knolls vent areas). Sampled vent fluids show a wide range of absolute REE concentrations and chondrite–normalized (REEN) distribution patterns (LaN/SmN ~ 0.6 – 11; LaN/YbN ~ 0.6 – 71; EuN/Eu*N ~ 1 – 55). REEN distribution patterns in different vent fluids range from light–REE enriched, to mid– and heavy–REE enriched, to flat, and have a range of positive Eu–anomalies. This heterogeneity contrasts markedly with relatively uniform REEN distribution patterns of mid–ocean ridge hydrothermal fluids. In Manus Basin fluids, aqueous REE compositions do not inherit directly or show a clear relationship with the REE compositions of primary crustal rocks with which hydrothermal fluids interact. These results suggest that the REEs are less sensitive indicators of primary crustal rock composition despite crustal rocks being the dominant source of REEs in submarine hydrothermal fluids. In contrast, differences in aqueous REE compositions are consistently correlated with differences in fluid pH and ligand (chloride, fluoride and sulfate) concentrations. Our results suggest that the REEs can be used as an indicator of the type of magmatic acid volatile (i.e., presence of HF, SO2) degassing in submarine hydrothermal systems. Additional fluid data suggest that near seafloor mixing between high–temperature hydrothermal fluid and locally entrained seawater at many vent areas in the Manus Basin causes anhydrite precipitation. Anhydrite effectively incorporates REE and likely affects measured fluid REE concentrations, but does not affect their relative distributions.This study received financial support from the Ocean Drilling Program Schlanger Fellowship (to P.R. Craddock), the WHOI Deep Ocean Exploration Institute Graduate Fellowship (to E. Reeves) and NSF grant OCE–0327448