Capillary Waves at Liquid/Vapor Interfaces: A Molecular Dynamics Simulation

Evidence for capillary waves at a liquid/vapor interface are presented from extensive molecular dynamics simulations of a system containing up to 1.24 million Lennard-Jones particles. Careful measurements show that the total interfacial width depends logarithmically on $L_\parallel$, the length of the simulation cell parallel to the interface, as predicted theoretically. The strength of the divergence of the interfacial width on $L_\parallel$ depends inversely on the surface tension $\gamma$. This allows us to measure $\gamma$ two ways since $\gamma$ can also be obtained from the difference in the pressure parallel and perpendicular to the interface. These two independent measures of $\gamma$ agree provided that the interfacial order parameter profile is fit to an error function and not a hyperbolic tangent, as often assumed. We explore why these two common fitting functions give different results for $\gamma$

16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice

Acknowledgements The authors acknowledge the assistance of Grietje Holtrop (RINH-BioSS) with the statistical analysis of the data and the Wellcome Trust Sanger Institute’s 454 pyrosequencing team for generating 16S rRNA gene data. AWW, PS and JP received core funding support from the Wellcome Trust [grant number 098051]. AWW, JCM, HJF and KPS are funded by the Scottish Government (SG-RESAS).Peer reviewedPublisher PD

Still flat after all these years

The Universe could be spatially flat, positively curved or negatively curved. Each option has been popular at various times, partly affected by an understanding that models tend to evolve away from flatness. The curvature of the Universe is amenable to measurement, through tests such as the determination of the angles of sufficiently large triangles. The angle subtended by the characteristic scale on the Cosmic Microwave sky provides a direct test, which has now been realised through a combination of exquisite results from a number of CMB experiments. After a long and detailed investigation, with many false clues, it seems that the mystery of the curvature of the Universe is now solved. It's an open and shut case: the Universe is flat.Comment: 7 pages, 2 figures, submitted to the Gravity Research Foundation Essay Competition for 200

Algebraic and combinatorial aspects of sandpile monoids on directed graphs

The sandpile group of a graph is a well-studied object that combines ideas from algebraic graph theory, group theory, dynamical systems, and statistical physics. A graph's sandpile group is part of a larger algebraic structure on the graph, known as its sandpile monoid. Most of the work on sandpiles so far has focused on the sandpile group rather than the sandpile monoid of a graph, and has also assumed the underlying graph to be undirected. A notable exception is the recent work of Babai and Toumpakari, which builds up the theory of sandpile monoids on directed graphs from scratch and provides many connections between the combinatorics of a graph and the algebraic aspects of its sandpile monoid. In this paper we primarily consider sandpile monoids on directed graphs, and we extend the existing theory in four main ways. First, we give a combinatorial classification of the maximal subgroups of a sandpile monoid on a directed graph in terms of the sandpile groups of certain easily-identifiable subgraphs. Second, we point out certain sandpile results for undirected graphs that are really results for sandpile monoids on directed graphs that contain exactly two idempotents. Third, we give a new algebraic constraint that sandpile monoids must satisfy and exhibit two infinite families of monoids that cannot be realized as sandpile monoids on any graph. Finally, we give an explicit combinatorial description of the sandpile group identity for every graph in a family of directed graphs which generalizes the family of (undirected) distance-regular graphs. This family includes many other graphs of interest, including iterated wheels, regular trees, and regular tournaments.Comment: v2: Cleaner presentation, new results in final section. Accepted for publication in J. Combin. Theory Ser. A. 21 pages, 5 figure

Transmission and Reflection of Bose-Einstein Condensates Incident on a Gaussian Potential Barrier

We investigate how Bose-Einstein condensates, whose initial state is either irrotational or contains a single vortex, scatter off a one-dimensional Gaussian potential barrier. We find that for low atom densities the vortex structure within the condensate is maintained during scattering, whereas at medium and high densities, multiple additional vortices can be created by the scattering process, resulting in complex dynamics and disruption of the atom cloud. This disruption originates from two different mechanisms associated respectively with the initial rotation of the atom cloud and the interference between the incident and reflected matter waves. We investigate how the reflection probability depends on the vorticity of the initial state and on the incident velocity of the Bose-Einstein condensate. To interpret our results, we derive a general analytical expression for the reflection coefficient of a rotating Bose-Einstein condensate that scatters off a spatially-varying one-dimensional potential.Comment: 9 pages, 9 figure

Anomalous quantum reflection of Bose-Einstein condensates from a silicon surface: the role of dynamical excitations

We investigate the effect of inter-atomic interactions on the quantum-mechanical reflection of Bose-Einstein condensates from regions of rapid potential variation. The reflection process depends critically on the density and incident velocity of the condensate. For low densities and high velocities, the atom cloud has almost the same form before and after reflection. Conversely, at high densities and low velocities, the reflection process generates solitons and vortex rings that fragment the condensate. We show that this fragmentation can explain the anomalously low reflection probabilities recently measured for low-velocity condensates incident on a silicon surface.Comment: 5 figures, 5 pages, references correcte

Immunosuppressants and risk of Parkinson disease

We performed a population-based case-control study of United States Medicare beneficiaries age 60-90 in 2009 with prescription data (48,295 incident Parkinson disease cases and 52,324 controls) to examine the risk of Parkinson disease in relation to use of immunosuppressants. Inosine monophosphate dehydrogenase inhibitors (relative risk = 0.64; 95% confidence interval 0.51-0.79) and corticosteroids (relative risk = 0.80; 95% confidence interval 0.77-0.83) were both associated with a lower risk of Parkinson disease. Inverse associations for both remained after applying a 12-month exposure lag. Overall, this study provides evidence that use of corticosteroids and inosine monophosphate dehydrogenase inhibitors might lower the risk of Parkinson disease

Digital Three-Dimensional Atlas of Quail Development Using High-Resolution MRI

We present an archetypal set of three-dimensional digital atlases of the quail embryo based on microscopic magnetic resonance imaging (µMRI). The atlases are composed of three modules: (1) images of fixed ex ovo quail, ranging in age from embryonic day 5 to 10 (e05 to e10); (2) a coarsely delineated anatomical atlas of the µMRI data; and (3) an organ system–based hierarchical graph linked to the anatomical delineations. The atlas is designed to be accessed using SHIVA, a free Java application. The atlas is extensible and can contain other types of information including anatomical, physiological, and functional descriptors. It can also be linked to online resources and references. This digital atlas provides a framework to place various data types, such as gene expression and cell migration data, within the normal three-dimensional anatomy of the developing quail embryo. This provides a method for the analysis and examination of the spatial relationships among the different types of information within the context of the entire embryo

Gulls

Abundant gull (Figure 1) populations in North America have led to a variety of conflicts with people. Gulls cause damage at aquaculture facilities and other properties, and often collide with aircraft. Their use of structures on and near water results in excessive amounts of bird droppings on boats and docks. Their presence near outdoor dining establishments, swimming beaches, and recreational sites can lead to negative interactions with people. Large amounts of gull fecal material pollutes water and beaches resulting in drinking water contamination and swim bans. A combination of dispersal techniques, exclusion and limited lethal control may reduce damage to an acceptable level. No single management method to prevent gull conflicts works all the time or in all settings. Wildlife management methods should be integrated so that one method enhances the effect of another. For example, frightening devices often are more effective when done in conjunction with habitat modification (e.g., removal of food resources or roosting habitat) to make a site less attractive to gulls. Likewise, exclusion devices, such as overhead wires, work better when combined with covering or removing food resources. Gulls are classified as a migratory bird species and are protected by federal and, in most cases, state laws. In the United States, gulls may be taken only with a permit issued by the U.S. Fish and Wildlife Service. Occasionally, an additional permit is required from the state wildlife management agency. Permits are issued only after dispersal and other non-lethal damage management methods have been employed and proven ineffective at resolving the conflicts. No federal permit is needed, however, to frighten or mechanically exclude gulls

HLA gene expression is altered in whole blood and placenta from women who later developed preeclampsia

Preeclampsia is a multi-system disease that significantly contributes to maternal and fetal morbidity and mortality. In this study, we used a non-biased microarray approach to identify dysregulated genes in maternal whole blood samples which may be associated with the development of preeclampsia. Whole blood samples were obtained at 28 weeks of gestation from 5 women who later developed preeclampsia (cases) and 10 matched women with normotensive pregnancies (controls). Placenta samples were obtained from an independent cohort of 19 women with preeclampsia matched with 19 women with normotensive pregnancies. We studied gene expression profiles using Illumina microarray in blood and validated changes in gene expression in whole blood and placenta tissue by qPCR. We found a transcriptional profile differentiating cases from controls; 236 genes were significantly dysregulated in blood from women who developed preeclampsia. Functional annotation of microarray results indicated that most of the genes found to be dysregulated were involved in inflammatory pathways. Whilst general trends were preserved, only HLA-A was validated in whole blood samples from cases using qPCR (2.30 ± 0.9 fold change) whereas in placental tissue HLA-DRB1 expression was found to be significantly increased in samples from women with preeclampsia (5.88 ± 2.24 fold change). We have identified that HLA-A is up-regulated in the circulation of women who went on to develop preeclampsia. In placenta of women with preeclampsia we identified that HLA-DRB1 is up-regulated. Our data provide further evidence for involvement of the HLA gene family in the pathogenesis of preeclampsia