Dipole-dipole interaction between orthogonal dipole moments in time-dependent geometries

In two nearby atoms, the dipole-dipole interaction can couple transitions with orthogonal dipole moments. This orthogonal coupling accounts for a number of interesting effects, but strongly depends on the geometry of the setup. Here, we discuss several setups of interest where the geometry is not fixed, such as particles in a trap or gases, by averaging over different sets of geometries. Two averaging methods are compared. In the first method, it is assumed that the internal electronic evolution is much faster than the change of geometry, whereas in the second, it is vice versa. We find that the orthogonal coupling typically survives even extensive averaging over different geometries, albeit with qualitatively different results for the two averaging methods. Typically, one- and two-dimensional averaging ranges modelling, e.g., low-dimensional gases, turn out to be the most promising model systems.Comment: 11 pages, 14 figure

Quantum optics with whispering gallery resonators coupled to atoms and fibers

In this thesis, coupled systems of whispering gallery resonators, atoms and fibers are investigated. A setup for a controllable photon turnstile consisting of a multilevel atom and a cavity by exploiting the properties of the photon statistics is suggested. Furthermore, a chain of atom-cavity systems connected via a fiber is considered. Due to the energy flux between the subsystems in both directions so-called supermodes with vastly enhanced transmission compared to a chain of independent subsystems develop. Interference effects between pathways on which light can propagate through the system cause these special modes. Moreover, pathway interference effects in an array of microcavities are studied. It is observed that the phase angles of the complex coupling constants describing the interaction of neighboring cavities influence crucially the transmission and reflection behavior of the array. We show that this can be exploited for precision measurements of the refractive index of a thin slab or determining the position of a nearby particle on a sub-wavelength scale. A quantitative analysis of the sensitivity of the setup is performed via FDTD simulations. Light propagation through a disk resonator with a hole as light scatterer in the terahertz regime is studied. The results are compared to experimental data and a very good agreement is observed

Microcavities coupled to multilevel atoms

A three-level atom in the $\Lambda$-configuration coupled to a microcavity is studied. The two transitions of the atom are assumed couple to different counterpropagating mode pairs in the cavity. We analyze the dynamics both, in the strong-coupling and the bad cavity limit. We find that compared to a two-level setup, the third atomic state and the additional control field modes crucially modify the system dynamics and enable more advanced control schemes. All results are explained using appropriate dressed state and eigenmode representations. As potential applications, we discuss optical switching and turnstile operations and detection of particles close to the resonator surface.Comment: 14 pages, 9 figure

Pathway interference in a loop array of three coupled microresonators

A system of three coupled toroidal microresonators arranged in a loop configuration is studied. This setup allows light entering the resonator setup from a tapered fiber to evolve along a variety of different pathways before leaving again through the fiber. In particular, the loop configuration of the resonators allows for an evolution which we term roundtrip process, in which the light evolves from one resonator sequentially through all others back to the initial one. This process renders the optical properties of the system sensitive to the phases of all coupling and scattering constants in the system. We analyze the transmission and reflection spectra, and interpret them in terms of interference between the various possible evolution pathways through the resonator system. In particular, we focus on the phase dependence of the optical properties. Finally, we discuss possible applications for this phase sensitivity induced by the roundtrip process, such as the measurement of the position of a nanoparticle close to one of the resonators, and the measurement of changes in the refractive index between two resonators. Our analytical results for the applications are supported by proof-of-principle calculations based on finite-difference-time-domain solution ofMaxwell's equations in two dimensions on a grid.Comment: 12 pages, 14 figure

Borylation in the Second Coordination Sphere of Fe(II) Cyanido Complexes and Its Impact on Their Electronic Structures and Excited-State Dynamics

Second coordination sphere interactions of cyanido complexes with hydrogen-bonding solvents and Lewis acids are known to influence their electronic structures, whereby the non-labile attachment of B(C6F5)3 resulted in several particularly interesting new compounds lately. Here, we investigate the effects of borylation on the properties of two FeII cyanido complexes in a systematic manner by comparing five different compounds and using a range of experimental techniques. Electrochemical measurements indicate that borylation entails a stabilization of the FeII-based t2g-like orbitals by up to 1.65 eV, and this finding was confirmed by Mössbauer spectroscopy. This change in the electronic structure has a profound impact on the UV–vis absorption properties of the borylated complexes compared to the non-borylated ones, shifting their metal-to-ligand charge transfer (MLCT) absorption bands over a wide range. Ultrafast UV–vis transient absorption spectroscopy provides insight into how borylation affects the excited-state dynamics. The lowest metal-centered (MC) excited states become shorter-lived in the borylated complexes compared to their cyanido analogues by a factor of ∼10, possibly due to changes in outer-sphere reorganization energies associated with their decay to the electronic ground state as a result of B(C6F5)3 attachment at the cyanido N lone pair

Nucleosome eviction from MHC class II promoters controls positioning of the transcription start site

Nucleosome depletion at transcription start sites (TSS) has been documented genome-wide in multiple eukaryotic organisms. However, the mechanisms that mediate this nucleosome depletion and its functional impact on transcription remain largely unknown. We have studied these issues at human MHC class II (MHCII) genes. Activation-induced nucleosome free regions (NFR) encompassing the TSS were observed at all MHCII genes. Nucleosome depletion was exceptionally strong, attaining over 250-fold, at the promoter of the prototypical HLA-DRA gene. The NFR was induced primarily by the transcription factor complex that assembles on the conserved promoter-proximal enhancer situated upstream of the TSS. Functional analyses performed in the context of native chromatin demonstrated that displacing the NFR without altering the sequence of the core promoter induced a shift in the position of the TSS. The NFR thus appears to play a critical role in transcription initiation because it directs correct TSS positioning in vivo. Our results provide support for a novel mechanism in transcription initiation whereby the position of the TSS is controlled by nucleosome eviction rather than by promoter sequenc

SARS-CoV-2 infection among employees working from home and on site: An occupational study in Switzerland.

During the COVID-19 pandemic, many companies implemented working from home to mitigate the spread of the disease among their employees. Using data from Corona Immunitas Nestlé, a seroepidemiological study conducted among employees from two Nestlé sites in Switzerland, we aimed to investigate whether there was a difference in SARS-CoV-2 infection rates between employees working most of the time from home and employees mobilized in a workplace equipped with a specialized occupational safety unit and strict sanitary measures. We also investigated whether this association was modified by household size, living with children, vulnerability, worries about an infection, and worries about adverse health consequences if infected. Data were collected between 8 December 2020, and 11 February 2021. Previous SARS-CoV-2 infections were ascertained by the presence of anti-SARS-CoV-2 IgG antibodies in the blood. Of the 425 employees included (53% women; mean age 42 years ranging between 21 and 64 years), 37% worked most of the time from home in 2020 and 16% had been infected with SARS-CoV-2. Participants who worked most of the time from home in 2020 had slightly higher odds of being infected with SARS-CoV-2 compared to participants who never or only sometimes worked from home (adjusted OR 1.29, 95% CI 0.73-2.27). The association was stronger in participants living alone or with one other person (adjusted OR 2.62, 95% CI 1.13-6.25). Among participants living with two or more other persons (adjusted OR 0.66, 95% CI 0.30-1.39) and among vulnerable participants (adjusted OR 0.53, 95% CI 0.13-1.93), working from home tended to be associated with lower odds of infection. In conclusion, in a context of strict sanitary measures implemented in the workplace, employees working from home did not seem to be at lower risk of infection compared to those working on site, especially if living alone or with one other person

NCBP3 positively impacts mRNA biogenesis

The nuclear Cap-Binding Complex (CBC), consisting of Nuclear Cap-Binding Protein 1 (NCBP1) and 2 (NCBP2), associates with the nascent 5' cap of RNA polymerase II transcripts and impacts RNA fate decisions. Recently, the C17orf85 protein, also called NCBP3, was suggested to form an alternative CBC by replacing NCBP2. However, applying protein-protein interaction screening of NCBP1, 2 and 3, we find that the interaction profile of NCBP3 is distinct. Whereas NCBP1 and 2 identify known CBC interactors, NCBP3 primarily interacts with components of the Exon Junction Complex (EJC) and the TRanscription and EXport (TREX) complex. NCBP3-EJC association in vitro and in vivo requires EJC core integrity and the in vivo RNA binding profiles of EJC and NCBP3 overlap. We further show that NCBP3 competes with the RNA degradation factor ZC3H18 for binding CBC-bound transcripts, and that NCBP3 positively impacts the nuclear export of polyadenylated RNAs and the expression of large multi-exonic transcripts. Collectively, our results place NCBP3 with the EJC and TREX complexes in supporting mRNA expression

Polymeric Surfactant P84/Polyoxometalate α-PW12O403- A Model System to Investigate the Interplay between Chaotropic and Hydrophobic Effects

Low charge density nanometric ions were recently shown to bind strongly to neutral hydrated matter in aqueous solution. This phenomenon, called the (super-)chaotropic effect, arises from the partial dehydration of both the nano-ion and the solute, leading to a significant gain in enthalpy. Here, we investigate the chaotropic effect of the polyoxometalate α-PW12O403− on the triblock copolymer P84: (EO)19(PO)43(EO)19 with (EO)19 the polyethoxylated and (PO)43 the polypropoxylated chains. The combination of phase diagrams, spectroscopic (nuclear magnetic resonance) and scattering (small angle neutron/X-ray scattering) techniques revealed that: (i) below the micellization temperature of P84, PW12O403− exclusively binds to the propylene oxide moiety of P84 unimers; and (ii) above the micellization temperature, PW12O403− mostly adsorbs on the ethylene oxide micellar corona. The preferential binding of the PW12O403− to the PPO chain over the PEO chains suggests that the binding is driven by the chaotropic effect and is reinforced by the hydrophobic effect. At higher temperatures, copolymer micellization leads to the displacement of PW12O403− from the PPO chain to the PEO chains. This study deepens our understanding of the subtle interplay between the chaotropic and hydrophobic effects in complex salt-organic matter solutions